RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 CD27P26842 260 aa12.22□□□□□ -0.45
CCDC3-202ENST00000378839 AQP2P41181 271 aa12.22□□□□□ -0.45
CCDC3-202ENST00000378839 RPS5P46782 204 aaKnown RBP12.22□□□□□ -0.45
CCDC3-202ENST00000378839 NRG3P56975 720 aa12.22□□□□□ -0.45
CCDC3-202ENST00000378839 ELOCQ15369 112 aa12.22□□□□□ -0.45
CCDC3-202ENST00000378839 LINC01590Q5TEZ4 76 aa12.22□□□□□ -0.45
CCDC3-202ENST00000378839 METAP1DQ6UB28 335 aaPredicted RBP12.22□□□□□ -0.45
CCDC3-202ENST00000378839 ATG4DQ86TL0 474 aaPredicted RBP12.22□□□□□ -0.45
CCDC3-202ENST00000378839 GPR135Q8IZ08 494 aa12.22□□□□□ -0.45
CCDC3-202ENST00000378839 SAMD12Q8N8I0 201 aa12.22□□□□□ -0.45
CCDC3-202ENST00000378839 LRRC75AQ8NAA5 344 aa12.22□□□□□ -0.45
CCDC3-202ENST00000378839 SLC2A12Q8TD20 617 aa12.22□□□□□ -0.45
CCDC3-202ENST00000378839 SLC7A6Q92536 515 aa12.22□□□□□ -0.45
CCDC3-202ENST00000378839 PDCD1LG2Q9BQ51 273 aa12.22□□□□□ -0.45
CCDC3-202ENST00000378839 WACQ9BTA9 647 aa12.22□□□□□ -0.45
CCDC3-202ENST00000378839 IRF2BPLQ9H1B7 796 aa12.22□□□□□ -0.45
CCDC3-202ENST00000378839 MKKSQ9NPJ1 570 aaPredicted RBP12.22□□□□□ -0.45
CCDC3-202ENST00000378839 CDC14CA4D256 554 aa12.21□□□□□ -0.45
CCDC3-202ENST00000378839 LILRA5A6NI73 299 aa12.21□□□□□ -0.45
CCDC3-202ENST00000378839 DCTN6O00399 190 aa12.21□□□□□ -0.45
CCDC3-202ENST00000378839 OGG1O15527 345 aa12.21□□□□□ -0.45
CCDC3-202ENST00000378839 F8A1P23610 371 aa12.21□□□□□ -0.45
CCDC3-202ENST00000378839 TTLL10Q6ZVT0 673 aa12.21□□□□□ -0.45
CCDC3-202ENST00000378839 GPALPP1Q8IXQ4 340 aa12.21□□□□□ -0.45
CCDC3-202ENST00000378839 SLC35F2Q8IXU6 374 aa12.21□□□□□ -0.45
CCDC3-202ENST00000378839 TRIM63Q969Q1 353 aa12.21□□□□□ -0.45
CCDC3-202ENST00000378839 Q96M85 177 aa12.21□□□□□ -0.45
CCDC3-202ENST00000378839 RBFOX1Q9NWB1 397 aaKnown RBP12.21□□□□□ -0.45
CCDC3-202ENST00000378839 RNF215Q9Y6U7 377 aa12.21□□□□□ -0.45
CCDC3-202ENST00000378839 VPS13AQ96RL7 3174 aa12.21□□□□□ -0.45
CCDC3-202ENST00000378839 LYRM1O43325 122 aa12.21□□□□□ -0.46
CCDC3-202ENST00000378839 SERPINI2O75830 405 aa12.21□□□□□ -0.46
CCDC3-202ENST00000378839 ATF1P18846 271 aa12.21□□□□□ -0.46
CCDC3-202ENST00000378839 RPL4P36578 427 aaKnown RBP12.21□□□□□ -0.46
CCDC3-202ENST00000378839 DIO1P49895 249 aa12.21□□□□□ -0.46
CCDC3-202ENST00000378839 OR1D5P58170 312 aa12.21□□□□□ -0.46
CCDC3-202ENST00000378839 STPG1Q5TH74 334 aa12.21□□□□□ -0.46
CCDC3-202ENST00000378839 TRIQKQ629K1 86 aa12.21□□□□□ -0.46
CCDC3-202ENST00000378839 DPY19L2P2Q6ZN68 376 aa12.21□□□□□ -0.46
CCDC3-202ENST00000378839 FRMD6Q96NE9 622 aa12.21□□□□□ -0.46
CCDC3-202ENST00000378839 GFI1Q99684 422 aa12.21□□□□□ -0.46
CCDC3-202ENST00000378839 FOXQ1Q9C009 403 aa12.21□□□□□ -0.46
CCDC3-202ENST00000378839 CLEC4AQ9UMR7 237 aa12.21□□□□□ -0.46
CCDC3-202ENST00000378839 KLHDC2Q9Y2U9 406 aa12.21□□□□□ -0.46
CCDC3-202ENST00000378839 ASXL3Q9C0F0 2248 aa12.21□□□□□ -0.46
CCDC3-202ENST00000378839 TEX13CA0A0J9YWL9 993 aa12.2□□□□□ -0.46
CCDC3-202ENST00000378839 IFNGP01579 166 aa12.2□□□□□ -0.46
CCDC3-202ENST00000378839 SRFP11831 508 aa12.2□□□□□ -0.46
CCDC3-202ENST00000378839 PPM1FP49593 454 aaPredicted RBP12.2□□□□□ -0.46
CCDC3-202ENST00000378839 GPR143P51810 404 aa12.2□□□□□ -0.46
CCDC3-202ENST00000378839 NANOS3P60323 173 aaKnown RBP12.2□□□□□ -0.46
CCDC3-202ENST00000378839 CDK5R1Q15078 307 aa12.2□□□□□ -0.46
CCDC3-202ENST00000378839 CDONQ4KMG0 1287 aa12.2□□□□□ -0.46
CCDC3-202ENST00000378839 Q5BKY6 102 aa12.2□□□□□ -0.46
CCDC3-202ENST00000378839 MZT2AQ6P582 158 aa12.2□□□□□ -0.46
CCDC3-202ENST00000378839 ESPNLQ6ZVH7 1005 aa12.2□□□□□ -0.46
CCDC3-202ENST00000378839 FAM122BQ7Z309 247 aa12.2□□□□□ -0.46
CCDC3-202ENST00000378839 CMIPQ8IY22 773 aa12.2□□□□□ -0.46
CCDC3-202ENST00000378839 SLC38A6Q8IZM9 456 aa12.2□□□□□ -0.46
CCDC3-202ENST00000378839 DUSP18Q8NEJ0 188 aa12.2□□□□□ -0.46
CCDC3-202ENST00000378839 OR14A16Q8NHC5 309 aa12.2□□□□□ -0.46
CCDC3-202ENST00000378839 C1orf216Q8TAB5 229 aa12.2□□□□□ -0.46
CCDC3-202ENST00000378839 THAP4Q8WY91 577 aa12.2□□□□□ -0.46
CCDC3-202ENST00000378839 HSD17B8Q92506 261 aa12.2□□□□□ -0.46
CCDC3-202ENST00000378839 KTI12Q96EK9 354 aaPredicted RBP12.2□□□□□ -0.46
CCDC3-202ENST00000378839 ZC3HAV1LQ96H79 300 aaKnown RBP12.2□□□□□ -0.46
CCDC3-202ENST00000378839 OR14A2Q96R54 314 aa12.2□□□□□ -0.46
CCDC3-202ENST00000378839 CNN2Q99439 309 aaKnown RBP12.2□□□□□ -0.46
CCDC3-202ENST00000378839 MESP1Q9BRJ9 268 aa12.2□□□□□ -0.46
CCDC3-202ENST00000378839 EVA1AQ9H8M9 152 aa12.2□□□□□ -0.46
CCDC3-202ENST00000378839 UCK1Q9HA47 277 aa12.2□□□□□ -0.46
CCDC3-202ENST00000378839 NCDNQ9UBB6 729 aa12.2□□□□□ -0.46
CCDC3-202ENST00000378839 BLOC1S5-TXNDC5H3BN57 136 aa12.2□□□□□ -0.46
CCDC3-202ENST00000378839 PIN1P1O15428 100 aa12.2□□□□□ -0.46
CCDC3-202ENST00000378839 SLC19A2O60779 497 aa12.2□□□□□ -0.46
CCDC3-202ENST00000378839 DDAH2O95865 285 aa12.2□□□□□ -0.46
CCDC3-202ENST00000378839 ALAS2P22557 587 aa12.2□□□□□ -0.46
CCDC3-202ENST00000378839 SRP9P49458 86 aaKnown RBP12.2□□□□□ -0.46
CCDC3-202ENST00000378839 GDI2P50395 445 aaKnown RBP12.2□□□□□ -0.46
CCDC3-202ENST00000378839 TOMM34Q15785 309 aaPredicted RBP12.2□□□□□ -0.46
CCDC3-202ENST00000378839 TATDN3Q17R31 274 aa12.2□□□□□ -0.46
CCDC3-202ENST00000378839 GKN2Q86XP6 184 aa12.2□□□□□ -0.46
CCDC3-202ENST00000378839 EXD3Q8N9H8 876 aa12.2□□□□□ -0.46
CCDC3-202ENST00000378839 ZNF511Q8NB15 262 aa12.2□□□□□ -0.46
CCDC3-202ENST00000378839 C19orf18Q8NEA5 215 aa12.2□□□□□ -0.46
CCDC3-202ENST00000378839 C7orf57Q8NEG2 295 aa12.2□□□□□ -0.46
CCDC3-202ENST00000378839 SUN5Q8TC36 379 aa12.2□□□□□ -0.46
CCDC3-202ENST00000378839 ZNF721Q8TF20 911 aa12.2□□□□□ -0.46
CCDC3-202ENST00000378839 UBASH3BQ8TF42 649 aa12.2□□□□□ -0.46
CCDC3-202ENST00000378839 ADIPOR1Q96A54 375 aa12.2□□□□□ -0.46
CCDC3-202ENST00000378839 TMEM246Q9BRR3 403 aa12.2□□□□□ -0.46
CCDC3-202ENST00000378839 SLC2A4RGQ9NR83 387 aa12.2□□□□□ -0.46
CCDC3-202ENST00000378839 PAQR5Q9NXK6 330 aaPredicted RBP12.2□□□□□ -0.46
CCDC3-202ENST00000378839 GNG8Q9UK08 70 aa12.2□□□□□ -0.46
CCDC3-202ENST00000378839 ALG5Q9Y673 324 aa12.2□□□□□ -0.46
CCDC3-202ENST00000378839 IGKV3D-11A0A0A0MRZ8 115 aa12.2□□□□□ -0.46
CCDC3-202ENST00000378839 A0A1B0GVT2 93 aa12.2□□□□□ -0.46
CCDC3-202ENST00000378839 TLCD2A6NGC4 264 aa12.2□□□□□ -0.46
CCDC3-202ENST00000378839 SOX30O94993 753 aa12.2□□□□□ -0.46
CCDC3-202ENST00000378839 UTS2O95399 124 aa12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms