RNA–Protein interactions for RNA: ENST00000353578.8

COL6A3-203, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 9,963 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-203ENST00000353578 OR4A4PQ8NGN8 299 aa11.8□□□□□ -0.52
COL6A3-203ENST00000353578 GALNT9Q9HCQ5 603 aa11.8□□□□□ -0.52
COL6A3-203ENST00000353578 TBC1D3KA0A087X1G2 549 aa11.8□□□□□ -0.52
COL6A3-203ENST00000353578 TBC1D3FA6NER0 549 aaPredicted RBP11.8□□□□□ -0.52
COL6A3-203ENST00000353578 CHRM2P08172 466 aa11.8□□□□□ -0.52
COL6A3-203ENST00000353578 SFTA3P0C7M3 94 aa11.8□□□□□ -0.52
COL6A3-203ENST00000353578 PCSK6P29122 969 aa11.8□□□□□ -0.52
COL6A3-203ENST00000353578 GATMP50440 423 aa11.8□□□□□ -0.52
COL6A3-203ENST00000353578 CASP7P55210 303 aa11.8□□□□□ -0.52
COL6A3-203ENST00000353578 SCAND1P57086 179 aa11.8□□□□□ -0.52
COL6A3-203ENST00000353578 TBC1D3GQ6DHY5 549 aa11.8□□□□□ -0.52
COL6A3-203ENST00000353578 PQLC3Q8N755 202 aa11.8□□□□□ -0.52
COL6A3-203ENST00000353578 OR8U1Q8NH10 309 aa11.8□□□□□ -0.52
COL6A3-203ENST00000353578 DDIT4LQ96D03 193 aa11.8□□□□□ -0.52
COL6A3-203ENST00000353578 RPA2P15927 270 aa11.8□□□□□ -0.52
COL6A3-203ENST00000353578 CERS5Q8N5B7 392 aa11.8□□□□□ -0.52
COL6A3-203ENST00000353578 ARV1Q9H2C2 271 aa11.8□□□□□ -0.52
COL6A3-203ENST00000353578 STAG3L3P0CL85 134 aa11.79□□□□□ -0.52
COL6A3-203ENST00000353578 IDUAP35475 653 aa11.79□□□□□ -0.52
COL6A3-203ENST00000353578 SH3BP2P78314 561 aa11.79□□□□□ -0.52
COL6A3-203ENST00000353578 NUP43Q8NFH3 380 aa11.79□□□□□ -0.52
COL6A3-203ENST00000353578 WDFY2Q96P53 400 aa11.79□□□□□ -0.52
COL6A3-203ENST00000353578 OR10A2Q9H208 303 aa11.79□□□□□ -0.52
COL6A3-203ENST00000353578 MRPL15Q9P015 296 aaKnown RBP11.79□□□□□ -0.52
COL6A3-203ENST00000353578 FBXL2Q9UKC9 423 aa11.79□□□□□ -0.52
COL6A3-203ENST00000353578 SCN1AP35498 2009 aa11.79□□□□□ -0.52
COL6A3-203ENST00000353578 IQCF5A8MTL0 148 aa11.79□□□□□ -0.52
COL6A3-203ENST00000353578 ZNF814B7Z6K7 855 aa11.79□□□□□ -0.52
COL6A3-203ENST00000353578 GRIN3BO60391 1043 aa11.79□□□□□ -0.52
COL6A3-203ENST00000353578 NHLH2Q02577 135 aa11.79□□□□□ -0.52
COL6A3-203ENST00000353578 TAF10Q12962 218 aa11.79□□□□□ -0.52
COL6A3-203ENST00000353578 ELOBQ15370 118 aa11.79□□□□□ -0.52
COL6A3-203ENST00000353578 SLC35D3Q5M8T2 416 aa11.79□□□□□ -0.52
COL6A3-203ENST00000353578 POMZP3Q6PJE2 187 aa11.79□□□□□ -0.52
COL6A3-203ENST00000353578 CLSTN3Q9BQT9 956 aa11.79□□□□□ -0.52
COL6A3-203ENST00000353578 ZNF891A8MT65 544 aaPredicted RBP11.79□□□□□ -0.52
COL6A3-203ENST00000353578 TACR1P25103 407 aa11.79□□□□□ -0.52
COL6A3-203ENST00000353578 TSFMP43897 325 aaKnown RBP11.79□□□□□ -0.52
COL6A3-203ENST00000353578 RABGGTBP53611 331 aa11.79□□□□□ -0.52
COL6A3-203ENST00000353578 SAXO2Q658L1 398 aa11.79□□□□□ -0.52
COL6A3-203ENST00000353578 OR4F15Q8NGB8 312 aa11.79□□□□□ -0.52
COL6A3-203ENST00000353578 SGIP1Q9BQI5 828 aa11.79□□□□□ -0.52
COL6A3-203ENST00000353578 TRMT61BQ9BVS5 477 aaKnown RBP11.79□□□□□ -0.52
COL6A3-203ENST00000353578 USP36Q9P275 1121 aaKnown RBP11.79□□□□□ -0.52
COL6A3-203ENST00000353578 SIM1P81133 766 aaPredicted RBP11.79□□□□□ -0.52
COL6A3-203ENST00000353578 RING1Q06587 406 aa11.79□□□□□ -0.52
COL6A3-203ENST00000353578 TPRG1Q6ZUI0 275 aa11.79□□□□□ -0.52
COL6A3-203ENST00000353578 OR52E2Q8NGJ4 325 aa11.79□□□□□ -0.52
COL6A3-203ENST00000353578 PMM1Q92871 262 aa11.79□□□□□ -0.52
COL6A3-203ENST00000353578 SMIM12Q96EX1 92 aa11.79□□□□□ -0.52
COL6A3-203ENST00000353578 TIMM29Q9BSF4 260 aa11.79□□□□□ -0.52
COL6A3-203ENST00000353578 NPIPA3F8WFD2 350 aa11.79□□□□□ -0.52
COL6A3-203ENST00000353578 GPR25O00155 361 aa11.79□□□□□ -0.52
COL6A3-203ENST00000353578 NCR1O76036 304 aa11.79□□□□□ -0.52
COL6A3-203ENST00000353578 KCNE1P15382 129 aa11.79□□□□□ -0.52
COL6A3-203ENST00000353578 BSGP35613 385 aa11.79□□□□□ -0.52
COL6A3-203ENST00000353578 MAP2K6P52564 334 aa11.79□□□□□ -0.52
COL6A3-203ENST00000353578 GGNBP1Q5YKI7 109 aa11.79□□□□□ -0.52
COL6A3-203ENST00000353578 LETMD1Q6P1Q0 360 aa11.79□□□□□ -0.52
COL6A3-203ENST00000353578 C4orf36Q96KX1 117 aa11.79□□□□□ -0.52
COL6A3-203ENST00000353578 SHARPINQ9H0F6 387 aa11.79□□□□□ -0.52
COL6A3-203ENST00000353578 SPANXA1Q9NS26 97 aa11.79□□□□□ -0.52
COL6A3-203ENST00000353578 LAMP3Q9UQV4 416 aa11.79□□□□□ -0.52
COL6A3-203ENST00000353578 RIPK3Q9Y572 518 aa11.79□□□□□ -0.52
COL6A3-203ENST00000353578 LOC102725191A0A1B0GVB3 256 aa11.79□□□□□ -0.52
COL6A3-203ENST00000353578 C7orf72A4D263 438 aa11.79□□□□□ -0.52
COL6A3-203ENST00000353578 LINC00862A6NCI5 91 aa11.79□□□□□ -0.52
COL6A3-203ENST00000353578 A8MX80 341 aa11.79□□□□□ -0.52
COL6A3-203ENST00000353578 PRAMEF11O60813 436 aa11.79□□□□□ -0.52
COL6A3-203ENST00000353578 CSKP41240 450 aa11.79□□□□□ -0.52
COL6A3-203ENST00000353578 LGI3Q8N145 548 aa11.79□□□□□ -0.52
COL6A3-203ENST00000353578 ZNF738Q8NE65 137 aa11.79□□□□□ -0.52
COL6A3-203ENST00000353578 DCCP43146 1447 aa11.79□□□□□ -0.52
COL6A3-203ENST00000353578 HIDE1A8MVS5 230 aa11.79□□□□□ -0.52
COL6A3-203ENST00000353578 ANHXE9PGG2 379 aa11.79□□□□□ -0.52
COL6A3-203ENST00000353578 ST8SIA3O43173 380 aa11.79□□□□□ -0.52
COL6A3-203ENST00000353578 NAT2P11245 290 aa11.79□□□□□ -0.52
COL6A3-203ENST00000353578 PRR27Q6MZM9 219 aa11.79□□□□□ -0.52
COL6A3-203ENST00000353578 SUV39H2Q9H5I1 410 aa11.79□□□□□ -0.52
COL6A3-203ENST00000353578 SLC17A5Q9NRA2 495 aa11.79□□□□□ -0.52
COL6A3-203ENST00000353578 RHCGQ9UBD6 479 aa11.79□□□□□ -0.52
COL6A3-203ENST00000353578 RTTNQ86VV8 2226 aa11.79□□□□□ -0.52
COL6A3-203ENST00000353578 A0A1B0GUL6 1792 aa11.79□□□□□ -0.52
COL6A3-203ENST00000353578 SMIM28A0A1B0GU29 152 aa11.79□□□□□ -0.52
COL6A3-203ENST00000353578 ACOD1A6NK06 481 aa11.79□□□□□ -0.52
COL6A3-203ENST00000353578 GABRR3A8MPY1 467 aa11.79□□□□□ -0.52
COL6A3-203ENST00000353578 CYP27C1Q4G0S4 372 aa11.79□□□□□ -0.52
COL6A3-203ENST00000353578 TMPRSS11FQ6ZWK6 438 aa11.79□□□□□ -0.52
COL6A3-203ENST00000353578 FAM129CQ86XR2 697 aa11.79□□□□□ -0.52
COL6A3-203ENST00000353578 OR2G3Q8NGZ4 309 aa11.79□□□□□ -0.52
COL6A3-203ENST00000353578 SFT2D1Q8WV19 159 aa11.79□□□□□ -0.52
COL6A3-203ENST00000353578 GPR173Q9NS66 373 aa11.79□□□□□ -0.52
COL6A3-203ENST00000353578 VSTM2BA6NLU5 285 aa11.78□□□□□ -0.52
COL6A3-203ENST00000353578 SYT5O00445 386 aa11.78□□□□□ -0.52
COL6A3-203ENST00000353578 CD37P11049 281 aa11.78□□□□□ -0.52
COL6A3-203ENST00000353578 GNSP15586 552 aa11.78□□□□□ -0.52
COL6A3-203ENST00000353578 SHMT2P34897 504 aa11.78□□□□□ -0.52
COL6A3-203ENST00000353578 NPBWR1P48145 328 aa11.78□□□□□ -0.52
COL6A3-203ENST00000353578 TSPAN31Q12999 210 aa11.78□□□□□ -0.52
COL6A3-203ENST00000353578 TOMM20LQ6UXN7 152 aa11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms