RNA–Protein interactions for RNA: ENST00000345005.8

CLK3-201, Transcript of CDC like kinase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLK3, Length 1,846 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-201ENST00000345005 RABL2BQ9UNT1 228 aa11.75□□□□□ -0.53
CLK3-201ENST00000345005 SLC35A3Q9Y2D2 325 aa11.75□□□□□ -0.53
CLK3-201ENST00000345005 LNP1A1A4G5 178 aa11.74□□□□□ -0.53
CLK3-201ENST00000345005 VSTM2BA6NLU5 285 aa11.74□□□□□ -0.53
CLK3-201ENST00000345005 IDSB3KWA1 339 aa11.74□□□□□ -0.53
CLK3-201ENST00000345005 PLD2O14939 933 aa11.74□□□□□ -0.53
CLK3-201ENST00000345005 CPNE3O75131 537 aaKnown RBP11.74□□□□□ -0.53
CLK3-201ENST00000345005 ALOX12BO75342 701 aa11.74□□□□□ -0.53
CLK3-201ENST00000345005 CSTAP01040 98 aa11.74□□□□□ -0.53
CLK3-201ENST00000345005 CYC1P08574 325 aa11.74□□□□□ -0.53
CLK3-201ENST00000345005 HPGDP15428 266 aa11.74□□□□□ -0.53
CLK3-201ENST00000345005 FPR3P25089 353 aa11.74□□□□□ -0.53
CLK3-201ENST00000345005 ADH7P40394 386 aa11.74□□□□□ -0.53
CLK3-201ENST00000345005 ACAA2P42765 397 aaKnown RBP11.74□□□□□ -0.53
CLK3-201ENST00000345005 EVX1P49640 407 aa11.74□□□□□ -0.53
CLK3-201ENST00000345005 RNF144AP50876 292 aaPredicted RBP11.74□□□□□ -0.53
CLK3-201ENST00000345005 LSM11P83369 360 aaKnown RBP eCLIP11.74□□□□□ -0.53
CLK3-201ENST00000345005 CD83Q01151 205 aa11.74□□□□□ -0.53
CLK3-201ENST00000345005 PLAURQ03405 335 aa11.74□□□□□ -0.53
CLK3-201ENST00000345005 EFR3AQ14156 821 aa11.74□□□□□ -0.53
CLK3-201ENST00000345005 EBPQ15125 230 aaKnown RBP11.74□□□□□ -0.53
CLK3-201ENST00000345005 HSD17B12Q53GQ0 312 aa11.74□□□□□ -0.53
CLK3-201ENST00000345005 KLHL26Q53HC5 615 aa11.74□□□□□ -0.53
CLK3-201ENST00000345005 SYT14P1Q58G82 188 aa11.74□□□□□ -0.53
CLK3-201ENST00000345005 SHISA6Q6ZSJ9 500 aa11.74□□□□□ -0.53
CLK3-201ENST00000345005 RASSF6Q6ZTQ3 369 aa11.74□□□□□ -0.53
CLK3-201ENST00000345005 LANCL3Q6ZV70 420 aa11.74□□□□□ -0.53
CLK3-201ENST00000345005 ANKRD37Q7Z713 158 aa11.74□□□□□ -0.53
CLK3-201ENST00000345005 NRMQ8IXM6 262 aa11.74□□□□□ -0.53
CLK3-201ENST00000345005 FAM109AQ8N4B1 249 aa11.74□□□□□ -0.53
CLK3-201ENST00000345005 OR4C3Q8NH37 302 aa11.74□□□□□ -0.53
CLK3-201ENST00000345005 TMEM255BQ8WV15 326 aa11.74□□□□□ -0.53
CLK3-201ENST00000345005 DEDD2Q8WXF8 326 aa11.74□□□□□ -0.53
CLK3-201ENST00000345005 FAM46AQ96IP4 442 aaKnown RBP11.74□□□□□ -0.53
CLK3-201ENST00000345005 ZNF582Q96NG8 517 aaPredicted RBP11.74□□□□□ -0.53
CLK3-201ENST00000345005 GAL3ST4Q96RP7 486 aa11.74□□□□□ -0.53
CLK3-201ENST00000345005 GPA33Q99795 319 aa11.74□□□□□ -0.53
CLK3-201ENST00000345005 PRSS27Q9BQR3 290 aa11.74□□□□□ -0.53
CLK3-201ENST00000345005 KATNB1Q9BVA0 655 aa11.74□□□□□ -0.53
CLK3-201ENST00000345005 SLC26A1Q9H2B4 701 aa11.74□□□□□ -0.53
CLK3-201ENST00000345005 PPP1R3EQ9H7J1 279 aa11.74□□□□□ -0.53
CLK3-201ENST00000345005 ASB6Q9NWX5 421 aa11.74□□□□□ -0.53
CLK3-201ENST00000345005 TOR4AQ9NXH8 423 aa11.74□□□□□ -0.53
CLK3-201ENST00000345005 B3GNT2Q9NY97 397 aa11.74□□□□□ -0.53
CLK3-201ENST00000345005 TMA7Q9Y2S6 64 aaKnown RBP11.74□□□□□ -0.53
CLK3-201ENST00000345005 SPEF1Q9Y4P9 236 aa11.74□□□□□ -0.53
CLK3-201ENST00000345005 VPS13AQ96RL7 3174 aa11.74□□□□□ -0.53
CLK3-201ENST00000345005 MEN1O00255 615 aa11.74□□□□□ -0.53
CLK3-201ENST00000345005 CASKO14936 926 aa11.74□□□□□ -0.53
CLK3-201ENST00000345005 TO15178 435 aa11.74□□□□□ -0.53
CLK3-201ENST00000345005 LYRM1O43325 122 aa11.74□□□□□ -0.53
CLK3-201ENST00000345005 GALR2O43603 387 aaPredicted RBP11.74□□□□□ -0.53
CLK3-201ENST00000345005 NOS1APO75052 506 aaPredicted RBP11.74□□□□□ -0.53
CLK3-201ENST00000345005 SNAPC5O75971 98 aa11.74□□□□□ -0.53
CLK3-201ENST00000345005 LYPD3O95274 346 aa11.74□□□□□ -0.53
CLK3-201ENST00000345005 IGFBP1P08833 259 aaPredicted RBP11.74□□□□□ -0.53
CLK3-201ENST00000345005 EMP2P54851 167 aa11.74□□□□□ -0.53
CLK3-201ENST00000345005 RRAS2P62070 204 aaPredicted RBP11.74□□□□□ -0.53
CLK3-201ENST00000345005 EFNB1P98172 346 aa11.74□□□□□ -0.53
CLK3-201ENST00000345005 IKZF1Q13422 519 aa11.74□□□□□ -0.53
CLK3-201ENST00000345005 GINS1Q14691 196 aa11.74□□□□□ -0.53
CLK3-201ENST00000345005 ZNF800Q2TB10 664 aaPredicted RBP eCLIP11.74□□□□□ -0.536e-8■□□□□ 8.3
CLK3-201ENST00000345005 MRGPREQ86SM8 312 aa11.74□□□□□ -0.53
CLK3-201ENST00000345005 CDH24Q86UP0 819 aa11.74□□□□□ -0.53
CLK3-201ENST00000345005 C9orf40Q8IXQ3 194 aa11.74□□□□□ -0.53
CLK3-201ENST00000345005 CDK20Q8IZL9 346 aa11.74□□□□□ -0.53
CLK3-201ENST00000345005 BMPERQ8N8U9 685 aa11.74□□□□□ -0.53
CLK3-201ENST00000345005 C17orf47Q8NEP4 570 aa11.74□□□□□ -0.53
CLK3-201ENST00000345005 TEX47Q8TBZ9 253 aa11.74□□□□□ -0.53
CLK3-201ENST00000345005 TMEM239Q8WW34 195 aa11.74□□□□□ -0.53
CLK3-201ENST00000345005 OSTF1Q92882 214 aa11.74□□□□□ -0.53
CLK3-201ENST00000345005 RNF31Q96EP0 1072 aa11.74□□□□□ -0.53
CLK3-201ENST00000345005 FYTTD1Q96QD9 318 aaKnown RBP11.74□□□□□ -0.53
CLK3-201ENST00000345005 TMEM43Q9BTV4 400 aa11.74□□□□□ -0.53
CLK3-201ENST00000345005 WWTR1Q9GZV5 400 aa11.74□□□□□ -0.53
CLK3-201ENST00000345005 RXFP3Q9NSD7 469 aa11.74□□□□□ -0.53
CLK3-201ENST00000345005 AKAP7Q9P0M2 348 aaPredicted RBP11.74□□□□□ -0.53
CLK3-201ENST00000345005 TNFRSF10DQ9UBN6 386 aa11.74□□□□□ -0.53
CLK3-201ENST00000345005 ING4Q9UNL4 249 aa11.74□□□□□ -0.53
CLK3-201ENST00000345005 SF3B6Q9Y3B4 125 aaKnown RBP11.74□□□□□ -0.53
CLK3-201ENST00000345005 R4GN57 208 aa11.74□□□□□ -0.53
CLK3-201ENST00000345005 COL27A1Q8IZC6 1860 aaPredicted RBP11.73□□□□□ -0.53
CLK3-201ENST00000345005 EXPH5Q8NEV8 1989 aa11.73□□□□□ -0.53
CLK3-201ENST00000345005 A0A0B4J2E0 115 aa11.73□□□□□ -0.53
CLK3-201ENST00000345005 A0A1B0GX12 115 aa11.73□□□□□ -0.53
CLK3-201ENST00000345005 ZSCAN5BA6NJL1 495 aa11.73□□□□□ -0.53
CLK3-201ENST00000345005 A6NL46 340 aa11.73□□□□□ -0.53
CLK3-201ENST00000345005 A8MV72 311 aaPredicted RBP11.73□□□□□ -0.53
CLK3-201ENST00000345005 SCDO00767 359 aa11.73□□□□□ -0.53
CLK3-201ENST00000345005 CDK2AP1O14519 115 aa11.73□□□□□ -0.53
CLK3-201ENST00000345005 CHP2O43745 196 aa11.73□□□□□ -0.53
CLK3-201ENST00000345005 AKAP8O43823 692 aaKnown RBP11.73□□□□□ -0.53
CLK3-201ENST00000345005 UTS2O95399 124 aa11.73□□□□□ -0.53
CLK3-201ENST00000345005 TBXA2RP21731 343 aa11.73□□□□□ -0.53
CLK3-201ENST00000345005 IL32P24001 234 aa11.73□□□□□ -0.53
CLK3-201ENST00000345005 ETV5P41161 510 aa11.73□□□□□ -0.53
CLK3-201ENST00000345005 HTR2BP41595 481 aa11.73□□□□□ -0.53
CLK3-201ENST00000345005 OR3A3P47888 321 aa11.73□□□□□ -0.53
CLK3-201ENST00000345005 ETV1P50549 477 aa11.73□□□□□ -0.53
CLK3-201ENST00000345005 GPR143P51810 404 aa11.73□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 86.7 ms