RNA–Protein interactions for RNA: ENST00000339997.8

RTN3-202, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,886 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-202ENST00000339997 ABHD4Q8TB40 342 aa8.09□□□□□ -1.11
RTN3-202ENST00000339997 HSD17B8Q92506 261 aa8.09□□□□□ -1.11
RTN3-202ENST00000339997 RBPMSQ93062 196 aaKnown RBP8.09□□□□□ -1.11
RTN3-202ENST00000339997 FCRL1Q96LA6 429 aa8.09□□□□□ -1.11
RTN3-202ENST00000339997 OR5B2Q96R09 309 aa8.09□□□□□ -1.11
RTN3-202ENST00000339997 ATF6BQ99941 703 aa8.09□□□□□ -1.11
RTN3-202ENST00000339997 C1QTNF2Q9BXJ5 285 aa8.09□□□□□ -1.11
RTN3-202ENST00000339997 CHST11Q9NPF2 352 aa8.09□□□□□ -1.11
RTN3-202ENST00000339997 APOBEC3BQ9UH17 382 aaKnown RBP8.09□□□□□ -1.11
RTN3-202ENST00000339997 NRAPQ86VF7 1730 aa8.09□□□□□ -1.11
RTN3-202ENST00000339997 TRABD2BA6NFA1 517 aa8.09□□□□□ -1.11
RTN3-202ENST00000339997 HSBP1L1C9JCN9 74 aa8.09□□□□□ -1.11
RTN3-202ENST00000339997 TNFRSF10AO00220 468 aa8.09□□□□□ -1.11
RTN3-202ENST00000339997 SCG5P05408 212 aa8.09□□□□□ -1.11
RTN3-202ENST00000339997 CALCBP10092 127 aa8.09□□□□□ -1.11
RTN3-202ENST00000339997 ZNF43P17038 809 aa8.09□□□□□ -1.11
RTN3-202ENST00000339997 HOXD9P28356 352 aaPredicted RBP8.09□□□□□ -1.11
RTN3-202ENST00000339997 MMP12P39900 470 aa8.09□□□□□ -1.11
RTN3-202ENST00000339997 EMP2P54851 167 aa8.09□□□□□ -1.11
RTN3-202ENST00000339997 OR2B8PP59922 312 aa8.09□□□□□ -1.11
RTN3-202ENST00000339997 PLK5Q496M5 336 aa8.09□□□□□ -1.11
RTN3-202ENST00000339997 HSF5Q4G112 596 aaPredicted RBP8.09□□□□□ -1.11
RTN3-202ENST00000339997 MAMDC2Q7Z304 686 aaPredicted RBP8.09□□□□□ -1.11
RTN3-202ENST00000339997 NLRP8Q86W28 1048 aa8.09□□□□□ -1.11
RTN3-202ENST00000339997 LINC00346Q8IVM7 164 aa8.09□□□□□ -1.11
RTN3-202ENST00000339997 OR52E1Q8NGJ3 308 aa8.09□□□□□ -1.11
RTN3-202ENST00000339997 OR52I1Q8NGK6 324 aa8.09□□□□□ -1.11
RTN3-202ENST00000339997 OR9A4Q8NGU2 314 aa8.09□□□□□ -1.11
RTN3-202ENST00000339997 FIBINQ8TAL6 211 aa8.09□□□□□ -1.11
RTN3-202ENST00000339997 FNDC9Q8TBE3 224 aa8.09□□□□□ -1.11
RTN3-202ENST00000339997 SFXN5Q8TD22 340 aa8.09□□□□□ -1.11
RTN3-202ENST00000339997 HPSE2Q8WWQ2 592 aa8.09□□□□□ -1.11
RTN3-202ENST00000339997 SERINC2Q96SA4 455 aa8.09□□□□□ -1.11
RTN3-202ENST00000339997 LDHAL6BQ9BYZ2 381 aaPredicted RBP8.09□□□□□ -1.11
RTN3-202ENST00000339997 PDE7BQ9NP56 450 aa8.09□□□□□ -1.11
RTN3-202ENST00000339997 DZANK1Q9NVP4 752 aa8.09□□□□□ -1.11
RTN3-202ENST00000339997 PLEK2Q9NYT0 353 aa8.09□□□□□ -1.11
RTN3-202ENST00000339997 SLC25A37Q9NYZ2 338 aa8.09□□□□□ -1.11
RTN3-202ENST00000339997 PPT2Q9UMR5 302 aa8.09□□□□□ -1.11
RTN3-202ENST00000339997 CHST2Q9Y4C5 530 aa8.09□□□□□ -1.11
RTN3-202ENST00000339997 TMEM82A0PJX8 343 aa8.09□□□□□ -1.11
RTN3-202ENST00000339997 VSTM2BA6NLU5 285 aa8.09□□□□□ -1.11
RTN3-202ENST00000339997 ZNF195O14628 629 aa8.09□□□□□ -1.11
RTN3-202ENST00000339997 UBBP0CG47 229 aa8.09□□□□□ -1.11
RTN3-202ENST00000339997 UBCP0CG48 685 aaKnown RBP8.09□□□□□ -1.11
RTN3-202ENST00000339997 PI3P19957 117 aa8.09□□□□□ -1.11
RTN3-202ENST00000339997 PGCP20142 388 aa8.09□□□□□ -1.11
RTN3-202ENST00000339997 MAOAP21397 527 aa8.09□□□□□ -1.11
RTN3-202ENST00000339997 HIST1H1TP22492 207 aaPredicted RBP8.09□□□□□ -1.11
RTN3-202ENST00000339997 IMPA1P29218 277 aa8.09□□□□□ -1.11
RTN3-202ENST00000339997 RORAP35398 523 aa8.09□□□□□ -1.11
RTN3-202ENST00000339997 SOX9P48436 509 aa8.09□□□□□ -1.11
RTN3-202ENST00000339997 NOVP48745 357 aa8.09□□□□□ -1.11
RTN3-202ENST00000339997 KCNJ10P78508 379 aa8.09□□□□□ -1.11
RTN3-202ENST00000339997 SELENBP1Q13228 472 aa8.09□□□□□ -1.11
RTN3-202ENST00000339997 LTC4SQ16873 150 aa8.09□□□□□ -1.11
RTN3-202ENST00000339997 DCST2Q5T1A1 773 aa8.09□□□□□ -1.11
RTN3-202ENST00000339997 PARS2Q7L3T8 475 aaKnown RBP8.09□□□□□ -1.11
RTN3-202ENST00000339997 KIAA0907Q7Z7F0 614 aaPredicted RBP8.09□□□□□ -1.11
RTN3-202ENST00000339997 ZNF695Q8IW36 515 aa8.09□□□□□ -1.11
RTN3-202ENST00000339997 SGPP2Q8IWX5 399 aa8.09□□□□□ -1.11
RTN3-202ENST00000339997 SLC16A11Q8NCK7 471 aa8.09□□□□□ -1.11
RTN3-202ENST00000339997 BTBD2Q9BX70 525 aa8.09□□□□□ -1.11
RTN3-202ENST00000339997 C19orf12Q9NSK7 152 aa8.09□□□□□ -1.11
RTN3-202ENST00000339997 EHFQ9NZC4 300 aa8.09□□□□□ -1.11
RTN3-202ENST00000339997 IGHV3-64DA0A0J9YX35 117 aa8.09□□□□□ -1.11
RTN3-202ENST00000339997 TAPBPO15533 448 aa8.09□□□□□ -1.11
RTN3-202ENST00000339997 VEGFDO43915 354 aa8.09□□□□□ -1.11
RTN3-202ENST00000339997 IFNA17P01571 189 aa8.09□□□□□ -1.11
RTN3-202ENST00000339997 PTHLHP12272 177 aa8.09□□□□□ -1.11
RTN3-202ENST00000339997 CPMP14384 443 aa8.09□□□□□ -1.11
RTN3-202ENST00000339997 HOXB9P17482 250 aaPredicted RBP8.09□□□□□ -1.11
RTN3-202ENST00000339997 MMP11P24347 488 aa8.09□□□□□ -1.11
RTN3-202ENST00000339997 TEAD1P28347 426 aa8.09□□□□□ -1.11
RTN3-202ENST00000339997 OR1D4P47884 311 aa8.09□□□□□ -1.11
RTN3-202ENST00000339997 ETV1P50549 477 aa8.09□□□□□ -1.11
RTN3-202ENST00000339997 MRPS34P82930 218 aaKnown RBP8.09□□□□□ -1.11
RTN3-202ENST00000339997 DEFA6Q01524 100 aa8.09□□□□□ -1.11
RTN3-202ENST00000339997 ACSM5Q6NUN0 579 aa8.09□□□□□ -1.11
RTN3-202ENST00000339997 UNC5DQ6UXZ4 953 aa8.09□□□□□ -1.11
RTN3-202ENST00000339997 FAM83HQ6ZRV2 1179 aaPredicted RBP8.09□□□□□ -1.11
RTN3-202ENST00000339997 PRICKLE2Q7Z3G6 844 aa8.09□□□□□ -1.11
RTN3-202ENST00000339997 NKAIN4Q8IVV8 208 aa8.09□□□□□ -1.11
RTN3-202ENST00000339997 HAS2Q92819 552 aa8.09□□□□□ -1.11
RTN3-202ENST00000339997 MAP6Q96JE9 813 aa8.09□□□□□ -1.11
RTN3-202ENST00000339997 MS4A4EQ96PG1 132 aa8.09□□□□□ -1.11
RTN3-202ENST00000339997 OR2M2Q96R28 347 aa8.09□□□□□ -1.11
RTN3-202ENST00000339997 NEURL2Q9BR09 285 aa8.09□□□□□ -1.11
RTN3-202ENST00000339997 OCSTAMPQ9BR26 566 aa8.09□□□□□ -1.11
RTN3-202ENST00000339997 NT5DC2Q9H857 520 aa8.09□□□□□ -1.11
RTN3-202ENST00000339997 TMEM30AQ9NV96 361 aa8.09□□□□□ -1.11
RTN3-202ENST00000339997 PGAP2Q9UHJ9 254 aa8.09□□□□□ -1.11
RTN3-202ENST00000339997 CIB4A0PJX0 185 aa8.08□□□□□ -1.12
RTN3-202ENST00000339997 A8MVJ9 347 aa8.08□□□□□ -1.12
RTN3-202ENST00000339997 C17orf105B2RV13 164 aa8.08□□□□□ -1.12
RTN3-202ENST00000339997 GAPDHSO14556 408 aaPredicted RBP8.08□□□□□ -1.12
RTN3-202ENST00000339997 SULT1B1O43704 296 aa8.08□□□□□ -1.12
RTN3-202ENST00000339997 LILRB5O75023 590 aa8.08□□□□□ -1.12
RTN3-202ENST00000339997 C1orf105O95561 183 aa8.08□□□□□ -1.12
RTN3-202ENST00000339997 GABRA5P31644 462 aa8.08□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms