RNA–Protein interactions for RNA: ENST00000339950.4

USP1-201, Transcript of ubiquitin specific peptidase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP1, Length 3,996 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-201ENST00000339950 VAMP1P23763 118 aa11.01□□□□□ -0.65
USP1-201ENST00000339950 CXCR1P25024 350 aa11.01□□□□□ -0.65
USP1-201ENST00000339950 ETV6P41212 452 aa11.01□□□□□ -0.65
USP1-201ENST00000339950 PSMA6P60900 246 aaKnown RBP11.01□□□□□ -0.65
USP1-201ENST00000339950 RRAS2P62070 204 aaPredicted RBP11.01□□□□□ -0.65
USP1-201ENST00000339950 CARD17Q5XLA6 110 aa11.01□□□□□ -0.65
USP1-201ENST00000339950 ARSKQ6UWY0 536 aa11.01□□□□□ -0.65
USP1-201ENST00000339950 ALKAL2Q6UX46 152 aa11.01□□□□□ -0.65
USP1-201ENST00000339950 QSOX2Q6ZRP7 698 aa11.01□□□□□ -0.65
USP1-201ENST00000339950 DIO2Q92813 273 aa11.01□□□□□ -0.65
USP1-201ENST00000339950 MED30Q96HR3 178 aa11.01□□□□□ -0.65
USP1-201ENST00000339950 CNN2Q99439 309 aaKnown RBP11.01□□□□□ -0.65
USP1-201ENST00000339950 RNF32Q9H0A6 362 aa11.01□□□□□ -0.65
USP1-201ENST00000339950 LYARQ9NX58 379 aaKnown RBP11.01□□□□□ -0.65
USP1-201ENST00000339950 GLTPQ9NZD2 209 aa11.01□□□□□ -0.65
USP1-201ENST00000339950 GRHPRQ9UBQ7 328 aa11.01□□□□□ -0.65
USP1-201ENST00000339950 CXCL3P19876 107 aa11.01□□□□□ -0.65
USP1-201ENST00000339950 ANXA7P20073 488 aaKnown RBP11.01□□□□□ -0.65
USP1-201ENST00000339950 NR0B1P51843 470 aaKnown RBP11.01□□□□□ -0.65
USP1-201ENST00000339950 CEBPGP53567 150 aa11.01□□□□□ -0.65
USP1-201ENST00000339950 PRMT2P55345 433 aa11.01□□□□□ -0.65
USP1-201ENST00000339950 DPTQ07507 201 aa11.01□□□□□ -0.65
USP1-201ENST00000339950 TMEM52BQ4KMG9 183 aa11.01□□□□□ -0.65
USP1-201ENST00000339950 OR7E24Q6IFN5 339 aa11.01□□□□□ -0.65
USP1-201ENST00000339950 ZNF767PQ75MW2 155 aa11.01□□□□□ -0.65
USP1-201ENST00000339950 GPAT4Q86UL3 456 aa11.01□□□□□ -0.65
USP1-201ENST00000339950 HIST2H2ABQ8IUE6 130 aaPredicted RBP11.01□□□□□ -0.65
USP1-201ENST00000339950 ETFBKMTQ8IXQ9 262 aa11.01□□□□□ -0.65
USP1-201ENST00000339950 SLC35F2Q8IXU6 374 aa11.01□□□□□ -0.65
USP1-201ENST00000339950 TOR1AIP2Q8NFQ8 470 aa11.01□□□□□ -0.65
USP1-201ENST00000339950 NPRL2Q8WTW4 380 aa11.01□□□□□ -0.65
USP1-201ENST00000339950 ZDHHC1Q8WTX9 485 aa11.01□□□□□ -0.65
USP1-201ENST00000339950 JSRP1Q96MG2 331 aaPredicted RBP11.01□□□□□ -0.65
USP1-201ENST00000339950 FAM83CQ9BQN1 747 aa11.01□□□□□ -0.65
USP1-201ENST00000339950 SYT4Q9H2B2 425 aa11.01□□□□□ -0.65
USP1-201ENST00000339950 EPHX3Q9H6B9 360 aa11.01□□□□□ -0.65
USP1-201ENST00000339950 ZSCAN32Q9NX65 697 aa11.01□□□□□ -0.65
USP1-201ENST00000339950 AP1M2Q9Y6Q5 423 aa11.01□□□□□ -0.65
USP1-201ENST00000339950 CPED1A4D0V7 1026 aa11.01□□□□□ -0.65
USP1-201ENST00000339950 ARL6IP5O75915 188 aa11.01□□□□□ -0.65
USP1-201ENST00000339950 TNFP01375 233 aa11.01□□□□□ -0.65
USP1-201ENST00000339950 HTR2AP28223 471 aa11.01□□□□□ -0.65
USP1-201ENST00000339950 IL12BP29460 328 aa11.01□□□□□ -0.65
USP1-201ENST00000339950 PEBP1P30086 187 aaKnown RBP11.01□□□□□ -0.65
USP1-201ENST00000339950 HTR1FP30939 366 aa11.01□□□□□ -0.65
USP1-201ENST00000339950 Q5BKY6 102 aa11.01□□□□□ -0.65
USP1-201ENST00000339950 SIGIRRQ6IA17 410 aa11.01□□□□□ -0.65
USP1-201ENST00000339950 LRRN1Q6UXK5 716 aa11.01□□□□□ -0.65
USP1-201ENST00000339950 CDRT4Q8N9R6 151 aa11.01□□□□□ -0.65
USP1-201ENST00000339950 MOSPD2Q8NHP6 518 aa11.01□□□□□ -0.65
USP1-201ENST00000339950 METTL21AQ8WXB1 218 aa11.01□□□□□ -0.65
USP1-201ENST00000339950 SENP5Q96HI0 755 aaPredicted RBP11.01□□□□□ -0.65
USP1-201ENST00000339950 FCRL1Q96LA6 429 aa11.01□□□□□ -0.65
USP1-201ENST00000339950 CMKLR1Q99788 373 aa11.01□□□□□ -0.65
USP1-201ENST00000339950 SLC6A15Q9H2J7 730 aa11.01□□□□□ -0.65
USP1-201ENST00000339950 SLC23A1Q9UHI7 598 aa11.01□□□□□ -0.65
USP1-201ENST00000339950 C2orf74A8MZ97 194 aa11□□□□□ -0.65
USP1-201ENST00000339950 RFPL3O75679 317 aa11□□□□□ -0.65
USP1-201ENST00000339950 SPDEFO95238 335 aa11□□□□□ -0.65
USP1-201ENST00000339950 GTF2F2P13984 249 aa11□□□□□ -0.65
USP1-201ENST00000339950 HLA-DMAP28067 261 aa11□□□□□ -0.65
USP1-201ENST00000339950 SKP1P63208 163 aa11□□□□□ -0.65
USP1-201ENST00000339950 CDK5Q00535 292 aa11□□□□□ -0.65
USP1-201ENST00000339950 ZP2Q05996 745 aa11□□□□□ -0.65
USP1-201ENST00000339950 FAM219AQ8IW50 185 aa11□□□□□ -0.65
USP1-201ENST00000339950 OR52B4Q8NGK2 314 aa11□□□□□ -0.65
USP1-201ENST00000339950 TOE1Q96GM8 510 aaKnown RBP11□□□□□ -0.65
USP1-201ENST00000339950 DDOQ99489 341 aa11□□□□□ -0.65
USP1-201ENST00000339950 SFXN1Q9H9B4 322 aa11□□□□□ -0.65
USP1-201ENST00000339950 WASH6PQ9NQA3 447 aa11□□□□□ -0.65
USP1-201ENST00000339950 HPF1Q9NWY4 346 aa11□□□□□ -0.65
USP1-201ENST00000339950 PLEKHA6Q9Y2H5 1048 aa11□□□□□ -0.65
USP1-201ENST00000339950 NLRC5Q86WI3 1866 aa11□□□□□ -0.65
USP1-201ENST00000339950 TRDV1A0A1B0GX56 115 aa11□□□□□ -0.65
USP1-201ENST00000339950 H7C2Y5 167 aa11□□□□□ -0.65
USP1-201ENST00000339950 SCDO00767 359 aa11□□□□□ -0.65
USP1-201ENST00000339950 RGS11O94810 467 aa11□□□□□ -0.65
USP1-201ENST00000339950 PIPP12273 146 aaPredicted RBP11□□□□□ -0.65
USP1-201ENST00000339950 GDNFP39905 211 aa11□□□□□ -0.65
USP1-201ENST00000339950 PRKXP51817 358 aa11□□□□□ -0.65
USP1-201ENST00000339950 ZNF800Q2TB10 664 aaPredicted RBP eCLIP11□□□□□ -0.65
USP1-201ENST00000339950 NIPAL3Q6P499 406 aa11□□□□□ -0.65
USP1-201ENST00000339950 DGAT2L6Q6ZPD8 337 aa11□□□□□ -0.65
USP1-201ENST00000339950 Q6ZS52 159 aa11□□□□□ -0.65
USP1-201ENST00000339950 KCTD9Q7L273 389 aa11□□□□□ -0.65
USP1-201ENST00000339950 KIAA0907Q7Z7F0 614 aaPredicted RBP11□□□□□ -0.65
USP1-201ENST00000339950 MFSD9Q8NBP5 474 aa11□□□□□ -0.65
USP1-201ENST00000339950 SYNPRQ8TBG9 265 aa11□□□□□ -0.65
USP1-201ENST00000339950 PPP1R14AQ96A00 147 aa11□□□□□ -0.65
USP1-201ENST00000339950 CREB3L1Q96BA8 519 aa11□□□□□ -0.65
USP1-201ENST00000339950 MNTQ99583 582 aa11□□□□□ -0.65
USP1-201ENST00000339950 TAS2R3Q9NYW6 316 aa11□□□□□ -0.65
USP1-201ENST00000339950 SLC35A3Q9Y2D2 325 aa11□□□□□ -0.65
USP1-201ENST00000339950 HEBP2Q9Y5Z4 205 aa11□□□□□ -0.65
USP1-201ENST00000339950 TCF20Q9UGU0 1960 aaKnown RBP11□□□□□ -0.65
USP1-201ENST00000339950 ZIC2O95409 532 aaPredicted RBP11□□□□□ -0.65
USP1-201ENST00000339950 TCRBP04435 133 aa11□□□□□ -0.65
USP1-201ENST00000339950 FPR3P25089 353 aa11□□□□□ -0.65
USP1-201ENST00000339950 MAP3K8P41279 467 aa11□□□□□ -0.65
USP1-201ENST00000339950 DLX2Q07687 328 aaPredicted RBP11□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 54.3 ms