RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 RIPPLY1Q0D2K3 151 aa11.75□□□□□ -0.53
SDC3-201ENST00000336798 RPE65Q16518 533 aa11.75□□□□□ -0.53
SDC3-201ENST00000336798 DNAJC22Q8N4W6 341 aa11.75□□□□□ -0.53
SDC3-201ENST00000336798 BRIX1Q8TDN6 353 aaKnown RBP11.75□□□□□ -0.53
SDC3-201ENST00000336798 SHISA4Q96DD7 197 aa11.75□□□□□ -0.53
SDC3-201ENST00000336798 PRRT1Q99946 306 aa11.75□□□□□ -0.53
SDC3-201ENST00000336798 WDR83Q9BRX9 315 aaKnown RBP11.75□□□□□ -0.53
SDC3-201ENST00000336798 TCEAL2Q9H3H9 227 aaPredicted RBP11.75□□□□□ -0.53
SDC3-201ENST00000336798 UBQLN4Q9NRR5 601 aa11.75□□□□□ -0.53
SDC3-201ENST00000336798 STEAP1Q9UHE8 339 aa11.75□□□□□ -0.53
SDC3-201ENST00000336798 COPS3Q9UNS2 423 aa11.75□□□□□ -0.53
SDC3-201ENST00000336798 AQP9O43315 295 aa11.75□□□□□ -0.53
SDC3-201ENST00000336798 AIFM1O95831 613 aa11.75□□□□□ -0.53
SDC3-201ENST00000336798 CBR1P16152 277 aa11.75□□□□□ -0.53
SDC3-201ENST00000336798 PCBD1P61457 104 aa11.75□□□□□ -0.53
SDC3-201ENST00000336798 OGFOD3Q6PK18 319 aa11.75□□□□□ -0.53
SDC3-201ENST00000336798 IL34Q6ZMJ4 242 aa11.75□□□□□ -0.53
SDC3-201ENST00000336798 RELL1Q8IUW5 271 aa11.75□□□□□ -0.53
SDC3-201ENST00000336798 BPIFB2Q8N4F0 458 aa11.75□□□□□ -0.53
SDC3-201ENST00000336798 TMEM217Q8N7C4 229 aa11.75□□□□□ -0.53
SDC3-201ENST00000336798 TERB2Q8NHR7 220 aa11.75□□□□□ -0.53
SDC3-201ENST00000336798 ZNF286AQ9HBT8 521 aa11.75□□□□□ -0.53
SDC3-201ENST00000336798 TXNL4BQ9NX01 149 aaKnown RBP11.75□□□□□ -0.53
SDC3-201ENST00000336798 IL17CQ9P0M4 197 aa11.75□□□□□ -0.53
SDC3-201ENST00000336798 INTS6Q9UL03 887 aaKnown RBP11.75□□□□□ -0.53
SDC3-201ENST00000336798 DPM1O60762 260 aa11.75□□□□□ -0.53
SDC3-201ENST00000336798 PRAMEF4O60810 478 aa11.75□□□□□ -0.53
SDC3-201ENST00000336798 MBP02144 154 aa11.75□□□□□ -0.53
SDC3-201ENST00000336798 TK1P04183 234 aa11.75□□□□□ -0.53
SDC3-201ENST00000336798 TP53P04637 393 aaPredicted RBP11.75□□□□□ -0.53
SDC3-201ENST00000336798 PKLRP30613 574 aa11.75□□□□□ -0.53
SDC3-201ENST00000336798 SERPINF1P36955 418 aa11.75□□□□□ -0.53
SDC3-201ENST00000336798 SSR4P51571 173 aa11.75□□□□□ -0.53
SDC3-201ENST00000336798 LGALS4P56470 323 aa11.75□□□□□ -0.53
SDC3-201ENST00000336798 ARL6IP1Q15041 203 aa11.75□□□□□ -0.53
SDC3-201ENST00000336798 FAM78AQ5JUQ0 283 aa11.75□□□□□ -0.53
SDC3-201ENST00000336798 CTSL3PQ5NE16 218 aa11.75□□□□□ -0.53
SDC3-201ENST00000336798 ZNF468Q5VIY5 522 aaPredicted RBP11.75□□□□□ -0.53
SDC3-201ENST00000336798 CLEC14AQ86T13 490 aa11.75□□□□□ -0.53
SDC3-201ENST00000336798 ADGRF3Q8IZF5 1079 aa11.75□□□□□ -0.53
SDC3-201ENST00000336798 ABHD11Q8NFV4 315 aa11.75□□□□□ -0.53
SDC3-201ENST00000336798 ZFAND1Q8TCF1 268 aa11.75□□□□□ -0.53
SDC3-201ENST00000336798 TXN2Q99757 166 aa11.75□□□□□ -0.53
SDC3-201ENST00000336798 TM7SF3Q9NS93 570 aa11.75□□□□□ -0.53
SDC3-201ENST00000336798 MYOTQ9UBF9 498 aa11.75□□□□□ -0.53
SDC3-201ENST00000336798 PHLPP1O60346 1717 aa11.75□□□□□ -0.53
SDC3-201ENST00000336798 UBR1Q8IWV7 1749 aa11.75□□□□□ -0.53
SDC3-201ENST00000336798 PTHP01270 115 aa11.75□□□□□ -0.53
SDC3-201ENST00000336798 C1SP09871 688 aa11.75□□□□□ -0.53
SDC3-201ENST00000336798 SNCAP37840 140 aa11.75□□□□□ -0.53
SDC3-201ENST00000336798 YIF1BQ5BJH7 314 aa11.75□□□□□ -0.53
SDC3-201ENST00000336798 ADIPOR2Q86V24 386 aa11.75□□□□□ -0.53
SDC3-201ENST00000336798 OR5AS1Q8N127 324 aa11.75□□□□□ -0.53
SDC3-201ENST00000336798 OR4M1Q8NGD0 313 aa11.75□□□□□ -0.53
SDC3-201ENST00000336798 ZNF480Q8WV37 535 aa11.75□□□□□ -0.53
SDC3-201ENST00000336798 SEC22AQ96IW7 307 aa11.75□□□□□ -0.53
SDC3-201ENST00000336798 SLC29A1Q99808 456 aa11.75□□□□□ -0.53
SDC3-201ENST00000336798 VPS25Q9BRG1 176 aa11.75□□□□□ -0.53
SDC3-201ENST00000336798 SLC25A31Q9H0C2 315 aa11.75□□□□□ -0.53
SDC3-201ENST00000336798 M0QZQ0 153 aa11.75□□□□□ -0.53
SDC3-201ENST00000336798 UPK1BO75841 260 aa11.75□□□□□ -0.53
SDC3-201ENST00000336798 EGFP01133 1207 aa11.75□□□□□ -0.53
SDC3-201ENST00000336798 ATPAF1Q5TC12 328 aaPredicted RBP11.75□□□□□ -0.53
SDC3-201ENST00000336798 NPSR1Q6W5P4 371 aa11.75□□□□□ -0.53
SDC3-201ENST00000336798 OR2T27Q8NH04 317 aa11.75□□□□□ -0.53
SDC3-201ENST00000336798 GINS3Q9BRX5 216 aa11.75□□□□□ -0.53
SDC3-201ENST00000336798 LMF2Q9BU23 707 aaKnown RBP11.75□□□□□ -0.53
SDC3-201ENST00000336798 MRI1Q9BV20 369 aa11.75□□□□□ -0.53
SDC3-201ENST00000336798 SELENOIQ9C0D9 397 aa11.75□□□□□ -0.53
SDC3-201ENST00000336798 SNNO75324 88 aaPredicted RBP11.74□□□□□ -0.53
SDC3-201ENST00000336798 PROX2Q3B8N5 592 aa11.74□□□□□ -0.53
SDC3-201ENST00000336798 CPZQ66K79 652 aa11.74□□□□□ -0.53
SDC3-201ENST00000336798 PM20D1Q6GTS8 502 aa11.74□□□□□ -0.53
SDC3-201ENST00000336798 METAP1DQ6UB28 335 aaPredicted RBP11.74□□□□□ -0.53
SDC3-201ENST00000336798 RANBP10Q6VN20 620 aa11.74□□□□□ -0.53
SDC3-201ENST00000336798 RABEPKQ7Z6M1 372 aa11.74□□□□□ -0.53
SDC3-201ENST00000336798 C3orf30Q96M34 536 aa11.74□□□□□ -0.53
SDC3-201ENST00000336798 OCSTAMPQ9BR26 566 aa11.74□□□□□ -0.53
SDC3-201ENST00000336798 GAREM1Q9H706 876 aa11.74□□□□□ -0.53
SDC3-201ENST00000336798 RCE1Q9Y256 329 aa11.74□□□□□ -0.53
SDC3-201ENST00000336798 CLDN1O95832 211 aa11.74□□□□□ -0.53
SDC3-201ENST00000336798 OR10J4P0C629 311 aa11.74□□□□□ -0.53
SDC3-201ENST00000336798 CALCBP10092 127 aa11.74□□□□□ -0.53
SDC3-201ENST00000336798 HIST1H1TP22492 207 aaPredicted RBP11.74□□□□□ -0.53
SDC3-201ENST00000336798 PROZP22891 400 aa11.74□□□□□ -0.53
SDC3-201ENST00000336798 TBPL2Q6SJ96 375 aa11.74□□□□□ -0.53
SDC3-201ENST00000336798 OR13C9Q8NGT0 318 aa11.74□□□□□ -0.53
SDC3-201ENST00000336798 RPS10-NUDT3A0A1W2PQS6 291 aa11.74□□□□□ -0.53
SDC3-201ENST00000336798 SULT1C2O00338 296 aa11.74□□□□□ -0.53
SDC3-201ENST00000336798 TPOP07202 933 aa11.74□□□□□ -0.53
SDC3-201ENST00000336798 RPS10P46783 165 aaKnown RBP11.74□□□□□ -0.53
SDC3-201ENST00000336798 EPHA5P54756 1037 aa11.74□□□□□ -0.53
SDC3-201ENST00000336798 BIDP55957 195 aa11.74□□□□□ -0.53
SDC3-201ENST00000336798 TESK1Q15569 626 aa11.74□□□□□ -0.53
SDC3-201ENST00000336798 ZNF750Q32MQ0 723 aa11.74□□□□□ -0.53
SDC3-201ENST00000336798 SLC36A2Q495M3 483 aa11.74□□□□□ -0.53
SDC3-201ENST00000336798 ZNF687Q8N1G0 1237 aa11.74□□□□□ -0.53
SDC3-201ENST00000336798 C19orf47Q8N9M1 422 aaKnown RBP11.74□□□□□ -0.53
SDC3-201ENST00000336798 ZFP90Q8TF47 636 aa11.74□□□□□ -0.53
SDC3-201ENST00000336798 GDE1Q9NZC3 331 aa11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms