RNA–Protein interactions for RNA: ENST00000332797.10

CCDC28A-201, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,496 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-201ENST00000332797 UQCRC1P31930 480 aa14.16□□□□□ -0.14
CCDC28A-201ENST00000332797 YAP1P46937 504 aaKnown RBP14.16□□□□□ -0.14
CCDC28A-201ENST00000332797 FOXD4Q12950 439 aaPredicted RBP14.16□□□□□ -0.14
CCDC28A-201ENST00000332797 PIN1Q13526 163 aaPredicted RBP14.16□□□□□ -0.14
CCDC28A-201ENST00000332797 OTUD3Q5T2D3 398 aaPredicted RBP14.16□□□□□ -0.14
CCDC28A-201ENST00000332797 PAQR6Q6TCH4 344 aa14.16□□□□□ -0.14
CCDC28A-201ENST00000332797 WDR88Q6ZMY6 472 aa14.16□□□□□ -0.14
CCDC28A-201ENST00000332797 FAM86B1Q8N7N1 296 aa14.16□□□□□ -0.14
CCDC28A-201ENST00000332797 TAAR8Q969N4 342 aa14.16□□□□□ -0.14
CCDC28A-201ENST00000332797 ZNF775Q96BV0 537 aaPredicted RBP14.16□□□□□ -0.14
CCDC28A-201ENST00000332797 LRRC46Q96FV0 321 aa14.16□□□□□ -0.14
CCDC28A-201ENST00000332797 CLPTM1LQ96KA5 538 aa14.16□□□□□ -0.14
CCDC28A-201ENST00000332797 EPYCQ99645 322 aa14.16□□□□□ -0.14
CCDC28A-201ENST00000332797 TMEM43Q9BTV4 400 aa14.16□□□□□ -0.14
CCDC28A-201ENST00000332797 NPDC1Q9NQX5 325 aaPredicted RBP14.16□□□□□ -0.14
CCDC28A-201ENST00000332797 ASH1LQ9NR48 2969 aaKnown RBP14.16□□□□□ -0.14
CCDC28A-201ENST00000332797 JKAMPQ9P055 326 aa14.16□□□□□ -0.14
CCDC28A-201ENST00000332797 INTS1Q8N201 2190 aaKnown RBP14.16□□□□□ -0.14
CCDC28A-201ENST00000332797 YES1P07947 543 aa14.15□□□□□ -0.14
CCDC28A-201ENST00000332797 CBLP22681 906 aa14.15□□□□□ -0.14
CCDC28A-201ENST00000332797 H3F3AP84243 136 aa14.15□□□□□ -0.14
CCDC28A-201ENST00000332797 DNAL1Q4LDG9 190 aa14.15□□□□□ -0.14
CCDC28A-201ENST00000332797 FAM69AQ5T7M9 428 aa14.15□□□□□ -0.14
CCDC28A-201ENST00000332797 SP5Q6BEB4 398 aaPredicted RBP14.15□□□□□ -0.14
CCDC28A-201ENST00000332797 TTC33Q6PID6 262 aaPredicted RBP14.15□□□□□ -0.14
CCDC28A-201ENST00000332797 LINC00114Q6XXX2 140 aa14.15□□□□□ -0.14
CCDC28A-201ENST00000332797 TMEM99Q8N816 258 aa14.15□□□□□ -0.14
CCDC28A-201ENST00000332797 MFSD8Q8NHS3 518 aa14.15□□□□□ -0.14
CCDC28A-201ENST00000332797 MPP4Q96JB8 637 aa14.15□□□□□ -0.14
CCDC28A-201ENST00000332797 PRRC1Q96M27 445 aa14.15□□□□□ -0.14
CCDC28A-201ENST00000332797 ZNF300Q96RE9 604 aaPredicted RBP14.15□□□□□ -0.14
CCDC28A-201ENST00000332797 TACO1Q9BSH4 297 aaKnown RBP14.15□□□□□ -0.14
CCDC28A-201ENST00000332797 THTPAQ9BU02 230 aa14.15□□□□□ -0.14
CCDC28A-201ENST00000332797 RBM24Q9BX46 236 aaKnown RBP14.15□□□□□ -0.14
CCDC28A-201ENST00000332797 BCO1Q9HAY6 547 aa14.15□□□□□ -0.14
CCDC28A-201ENST00000332797 GP6Q9HCN6 339 aa14.15□□□□□ -0.14
CCDC28A-201ENST00000332797 EMC3Q9P0I2 261 aa14.15□□□□□ -0.14
CCDC28A-201ENST00000332797 C6orf203Q9P0P8 240 aaPredicted RBP14.15□□□□□ -0.14
CCDC28A-201ENST00000332797 RIMS3Q9UJD0 308 aa14.15□□□□□ -0.14
CCDC28A-201ENST00000332797 ING1Q9UK53 422 aaPredicted RBP14.15□□□□□ -0.14
CCDC28A-201ENST00000332797 MPDZO75970 2070 aa14.14□□□□□ -0.15
CCDC28A-201ENST00000332797 ZNF716A6NP11 495 aa14.14□□□□□ -0.15
CCDC28A-201ENST00000332797 FTCDNL1E5RQL4 147 aa14.14□□□□□ -0.15
CCDC28A-201ENST00000332797 J3KTA2 159 aa14.14□□□□□ -0.15
CCDC28A-201ENST00000332797 KPNA4O00629 521 aaPredicted RBP14.14□□□□□ -0.15
CCDC28A-201ENST00000332797 MSTNO14793 375 aa14.14□□□□□ -0.15
CCDC28A-201ENST00000332797 OR2T1O43869 369 aa14.14□□□□□ -0.15
CCDC28A-201ENST00000332797 CGAP01215 116 aa14.14□□□□□ -0.15
CCDC28A-201ENST00000332797 CD8BP10966 210 aa14.14□□□□□ -0.15
CCDC28A-201ENST00000332797 IFNA8P32881 189 aa14.14□□□□□ -0.15
CCDC28A-201ENST00000332797 BNIP1Q12981 228 aa14.14□□□□□ -0.15
CCDC28A-201ENST00000332797 FBXL19-AS1Q494R0 122 aa14.14□□□□□ -0.15
CCDC28A-201ENST00000332797 CYP2R1Q6VVX0 501 aa14.14□□□□□ -0.15
CCDC28A-201ENST00000332797 NUFIP2Q7Z417 695 aaKnown RBP14.14□□□□□ -0.15
CCDC28A-201ENST00000332797 C10orf53Q8N6V4 93 aa14.14□□□□□ -0.15
CCDC28A-201ENST00000332797 RNASE6Q93091 150 aaKnown RBP14.14□□□□□ -0.15
CCDC28A-201ENST00000332797 CCDC124Q96CT7 223 aaKnown RBP14.14□□□□□ -0.15
CCDC28A-201ENST00000332797 SLC7A6OSQ96CW6 309 aaPredicted RBP14.14□□□□□ -0.15
CCDC28A-201ENST00000332797 PRSS27Q9BQR3 290 aa14.14□□□□□ -0.15
CCDC28A-201ENST00000332797 RHCGQ9UBD6 479 aa14.14□□□□□ -0.15
CCDC28A-201ENST00000332797 A4GNTQ9UNA3 340 aa14.14□□□□□ -0.15
CCDC28A-201ENST00000332797 HCFC1P51610 2035 aa14.13□□□□□ -0.15
CCDC28A-201ENST00000332797 AQP7P3A6NL99 342 aa14.13□□□□□ -0.15
CCDC28A-201ENST00000332797 ZNF724A8MTY0 619 aa14.13□□□□□ -0.15
CCDC28A-201ENST00000332797 A8MXE2 369 aa14.13□□□□□ -0.15
CCDC28A-201ENST00000332797 ATP6V1B2P21281 511 aa14.13□□□□□ -0.15
CCDC28A-201ENST00000332797 GRPRP30550 384 aa14.13□□□□□ -0.15
CCDC28A-201ENST00000332797 PDK3Q15120 406 aa14.13□□□□□ -0.15
CCDC28A-201ENST00000332797 GALNT5Q7Z7M9 940 aa14.13□□□□□ -0.15
CCDC28A-201ENST00000332797 NKAIN4Q8IVV8 208 aa14.13□□□□□ -0.15
CCDC28A-201ENST00000332797 ZNF610Q8N9Z0 462 aa14.13□□□□□ -0.15
CCDC28A-201ENST00000332797 PYURFQ96I23 114 aa14.13□□□□□ -0.15
CCDC28A-201ENST00000332797 BTBD10Q9BSF8 475 aa14.13□□□□□ -0.15
CCDC28A-201ENST00000332797 FNDC11Q9BVV2 318 aa14.13□□□□□ -0.15
CCDC28A-201ENST00000332797 MUC13Q9H3R2 512 aa14.13□□□□□ -0.15
CCDC28A-201ENST00000332797 PLSCR4Q9NRQ2 329 aa14.13□□□□□ -0.15
CCDC28A-201ENST00000332797 GALNT8Q9NY28 637 aa14.13□□□□□ -0.15
CCDC28A-201ENST00000332797 ACTR3BQ9P1U1 418 aa14.13□□□□□ -0.15
CCDC28A-201ENST00000332797 SEC14L4Q9UDX3 406 aa14.13□□□□□ -0.15
CCDC28A-201ENST00000332797 IGKV3D-15A0A087WSY6 115 aa14.12□□□□□ -0.15
CCDC28A-201ENST00000332797 LRRN3E7EW58 273 aa14.12□□□□□ -0.15
CCDC28A-201ENST00000332797 hCG_2039718K7EN88 272 aa14.12□□□□□ -0.15
CCDC28A-201ENST00000332797 M0R082 166 aa14.12□□□□□ -0.15
CCDC28A-201ENST00000332797 BGLAPP02818 100 aa14.12□□□□□ -0.15
CCDC28A-201ENST00000332797 THRBP10828 461 aa14.12□□□□□ -0.15
CCDC28A-201ENST00000332797 SLC16A1P53985 500 aa14.12□□□□□ -0.15
CCDC28A-201ENST00000332797 ST3GAL3Q11203 375 aa14.12□□□□□ -0.15
CCDC28A-201ENST00000332797 SNTB1Q13884 538 aaKnown RBP14.12□□□□□ -0.15
CCDC28A-201ENST00000332797 TRIM25Q14258 630 aaKnown RBP14.12□□□□□ -0.15
CCDC28A-201ENST00000332797 EXOC3L2Q2M3D2 409 aa14.12□□□□□ -0.15
CCDC28A-201ENST00000332797 TMEM225Q6GV28 225 aa14.12□□□□□ -0.15
CCDC28A-201ENST00000332797 ZNF474Q6S9Z5 364 aaPredicted RBP14.12□□□□□ -0.15
CCDC28A-201ENST00000332797 MEX3BQ6ZN04 569 aaKnown RBP14.12□□□□□ -0.15
CCDC28A-201ENST00000332797 GPAT4Q86UL3 456 aa14.12□□□□□ -0.15
CCDC28A-201ENST00000332797 CYP4Z1Q86W10 505 aa14.12□□□□□ -0.15
CCDC28A-201ENST00000332797 DHFR2Q86XF0 187 aa14.12□□□□□ -0.15
CCDC28A-201ENST00000332797 OFCC1Q8IZS5 231 aa14.12□□□□□ -0.15
CCDC28A-201ENST00000332797 ZNF417Q8TAU3 575 aa14.12□□□□□ -0.15
CCDC28A-201ENST00000332797 TMEM255BQ8WV15 326 aa14.12□□□□□ -0.15
CCDC28A-201ENST00000332797 MOGAT1Q96PD6 335 aa14.12□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms