RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 OR52I1Q8NGK6 324 aa10.72□□□□□ -0.69
VPS39-201ENST00000318006 ABHD4Q8TB40 342 aa10.72□□□□□ -0.69
VPS39-201ENST00000318006 DNAJA3Q96EY1 480 aa10.72□□□□□ -0.69
VPS39-201ENST00000318006 PEX11GQ96HA9 241 aa10.72□□□□□ -0.69
VPS39-201ENST00000318006 SERINC2Q96SA4 455 aa10.72□□□□□ -0.69
VPS39-201ENST00000318006 SEC22CQ9BRL7 303 aa10.72□□□□□ -0.69
VPS39-201ENST00000318006 A0A087WZY1 265 aa10.72□□□□□ -0.69
VPS39-201ENST00000318006 TUBAL3A6NHL2 446 aa10.72□□□□□ -0.69
VPS39-201ENST00000318006 SCO2O43819 266 aa10.72□□□□□ -0.69
VPS39-201ENST00000318006 CLEC3AO75596 197 aa10.72□□□□□ -0.69
VPS39-201ENST00000318006 ATP1B1P05026 303 aa10.72□□□□□ -0.69
VPS39-201ENST00000318006 CBR1P16152 277 aa10.72□□□□□ -0.69
VPS39-201ENST00000318006 MC3RP41968 323 aa10.72□□□□□ -0.69
VPS39-201ENST00000318006 SEC61A1P61619 476 aaKnown RBP10.72□□□□□ -0.69
VPS39-201ENST00000318006 HTRA4P83105 476 aaPredicted RBP10.72□□□□□ -0.69
VPS39-201ENST00000318006 HTD2P86397 168 aa10.72□□□□□ -0.69
VPS39-201ENST00000318006 EIF2B1Q14232 305 aaKnown RBP10.72□□□□□ -0.69
VPS39-201ENST00000318006 USP53Q70EK8 1073 aa10.72□□□□□ -0.69
VPS39-201ENST00000318006 OR10R2Q8NGX6 335 aa10.72□□□□□ -0.69
VPS39-201ENST00000318006 UBE2FQ969M7 185 aa10.72□□□□□ -0.69
VPS39-201ENST00000318006 INTS14Q96SY0 518 aa10.72□□□□□ -0.69
VPS39-201ENST00000318006 NIPSNAP1Q9BPW8 284 aa10.72□□□□□ -0.69
VPS39-201ENST00000318006 ZNF629Q9UEG4 869 aaPredicted RBP10.72□□□□□ -0.69
VPS39-201ENST00000318006 CA14Q9ULX7 337 aa10.72□□□□□ -0.69
VPS39-201ENST00000318006 COL24A1Q17RW2 1714 aa10.71□□□□□ -0.69
VPS39-201ENST00000318006 HMX2A2RU54 273 aa10.71□□□□□ -0.69
VPS39-201ENST00000318006 AGAP14A8MT82 685 aa10.71□□□□□ -0.69
VPS39-201ENST00000318006 SPI1P17947 270 aa10.71□□□□□ -0.69
VPS39-201ENST00000318006 P2RY2P41231 377 aa10.71□□□□□ -0.69
VPS39-201ENST00000318006 KIAA0141Q14154 515 aaPredicted RBP10.71□□□□□ -0.69
VPS39-201ENST00000318006 GPR139Q6DWJ6 353 aa10.71□□□□□ -0.69
VPS39-201ENST00000318006 NLGN4XQ8N0W4 816 aa10.71□□□□□ -0.69
VPS39-201ENST00000318006 ZFP82Q8N141 532 aa10.71□□□□□ -0.69
VPS39-201ENST00000318006 GHSRQ92847 366 aa10.71□□□□□ -0.69
VPS39-201ENST00000318006 ZNF566Q969W8 418 aa10.71□□□□□ -0.69
VPS39-201ENST00000318006 BMFQ96LC9 184 aa10.71□□□□□ -0.69
VPS39-201ENST00000318006 TMEM43Q9BTV4 400 aa10.71□□□□□ -0.69
VPS39-201ENST00000318006 PLEKHA3Q9HB20 300 aa10.71□□□□□ -0.69
VPS39-201ENST00000318006 SUSD2Q9UGT4 822 aa10.71□□□□□ -0.69
VPS39-201ENST00000318006 HHLA2Q9UM44 414 aa10.71□□□□□ -0.69
VPS39-201ENST00000318006 A0A0U1RQK1 487 aa10.71□□□□□ -0.69
VPS39-201ENST00000318006 TACR1P25103 407 aa10.71□□□□□ -0.69
VPS39-201ENST00000318006 DUSP3P51452 185 aaPredicted RBP10.71□□□□□ -0.69
VPS39-201ENST00000318006 SNRPGP62308 76 aaKnown RBP10.71□□□□□ -0.69
VPS39-201ENST00000318006 AQP6Q13520 282 aa10.71□□□□□ -0.69
VPS39-201ENST00000318006 CAMK2DQ13557 499 aa10.71□□□□□ -0.69
VPS39-201ENST00000318006 EXOSC2Q13868 293 aaKnown RBP10.71□□□□□ -0.69
VPS39-201ENST00000318006 KIR2DS3Q14952 304 aa10.71□□□□□ -0.69
VPS39-201ENST00000318006 TMEM244Q5VVB8 128 aa10.71□□□□□ -0.69
VPS39-201ENST00000318006 SAXO2Q658L1 398 aa10.71□□□□□ -0.69
VPS39-201ENST00000318006 NIPAL3Q6P499 406 aa10.71□□□□□ -0.69
VPS39-201ENST00000318006 NLRC3Q7RTR2 1065 aa10.71□□□□□ -0.69
VPS39-201ENST00000318006 ZNF761Q86XN6 746 aaPredicted RBP10.71□□□□□ -0.69
VPS39-201ENST00000318006 CMTM1Q8IZ96 169 aa10.71□□□□□ -0.69
VPS39-201ENST00000318006 OR52E1Q8NGJ3 308 aa10.71□□□□□ -0.69
VPS39-201ENST00000318006 OR1S1Q8NH92 325 aa10.71□□□□□ -0.69
VPS39-201ENST00000318006 C2CD4CQ8TF44 421 aa10.71□□□□□ -0.69
VPS39-201ENST00000318006 OCSTAMPQ9BR26 566 aa10.71□□□□□ -0.69
VPS39-201ENST00000318006 NICN1Q9BSH3 213 aa10.71□□□□□ -0.69
VPS39-201ENST00000318006 SORBS1Q9BX66 1292 aaKnown RBP10.71□□□□□ -0.69
VPS39-201ENST00000318006 NMNAT2Q9BZQ4 307 aa10.71□□□□□ -0.69
VPS39-201ENST00000318006 RNF167Q9H6Y7 350 aa10.71□□□□□ -0.69
VPS39-201ENST00000318006 CLEC2DQ9UHP7 191 aa10.71□□□□□ -0.69
VPS39-201ENST00000318006 KIAA0100Q14667 2235 aaKnown RBP10.71□□□□□ -0.7
VPS39-201ENST00000318006 NUDT19A8MXV4 375 aa10.71□□□□□ -0.7
VPS39-201ENST00000318006 LILRB5O75023 590 aa10.71□□□□□ -0.7
VPS39-201ENST00000318006 PIPP12273 146 aaPredicted RBP10.71□□□□□ -0.7
VPS39-201ENST00000318006 CRABP1P29762 137 aa10.71□□□□□ -0.7
VPS39-201ENST00000318006 CX3CR1P49238 355 aa10.71□□□□□ -0.7
VPS39-201ENST00000318006 GBX1Q14549 363 aa10.71□□□□□ -0.7
VPS39-201ENST00000318006 ENTPD8Q5MY95 495 aa10.71□□□□□ -0.7
VPS39-201ENST00000318006 ADAM5Q6NVV9 412 aa10.71□□□□□ -0.7
VPS39-201ENST00000318006 ZNF765Q7L2R6 523 aa10.71□□□□□ -0.7
VPS39-201ENST00000318006 PLXDC1Q8IUK5 500 aa10.71□□□□□ -0.7
VPS39-201ENST00000318006 HORMAD2Q8N7B1 307 aa10.71□□□□□ -0.7
VPS39-201ENST00000318006 ACOT4Q8N9L9 421 aa10.71□□□□□ -0.7
VPS39-201ENST00000318006 ZBP1Q9H171 429 aa10.71□□□□□ -0.7
VPS39-201ENST00000318006 NDRG4Q9ULP0 352 aaKnown RBP10.71□□□□□ -0.7
VPS39-201ENST00000318006 CCL26Q9Y258 94 aa10.71□□□□□ -0.7
VPS39-201ENST00000318006 SLC35A3Q9Y2D2 325 aa10.71□□□□□ -0.7
VPS39-201ENST00000318006 NPFFR2Q9Y5X5 522 aa10.71□□□□□ -0.7
VPS39-201ENST00000318006 TNKS1BP1Q9C0C2 1729 aaKnown RBP10.71□□□□□ -0.7
VPS39-201ENST00000318006 MN1Q10571 1320 aaPredicted RBP10.71□□□□□ -0.7
VPS39-201ENST00000318006 TP53I11O14683 189 aa10.7□□□□□ -0.7
VPS39-201ENST00000318006 PMS2P2O95744 297 aa10.7□□□□□ -0.7
VPS39-201ENST00000318006 THBS2P35442 1172 aa10.7□□□□□ -0.7
VPS39-201ENST00000318006 SLC9A3R2Q15599 337 aa10.7□□□□□ -0.7
VPS39-201ENST00000318006 DEFB110Q30KQ9 67 aa10.7□□□□□ -0.7
VPS39-201ENST00000318006 NXNL2Q5VZ03 156 aa10.7□□□□□ -0.7
VPS39-201ENST00000318006 NANOGP1Q8N7R0 232 aa10.7□□□□□ -0.7
VPS39-201ENST00000318006 BBS1Q8NFJ9 593 aa10.7□□□□□ -0.7
VPS39-201ENST00000318006 OR52N1Q8NH53 320 aa10.7□□□□□ -0.7
VPS39-201ENST00000318006 LKAAEAR1Q8TD35 194 aa10.7□□□□□ -0.7
VPS39-201ENST00000318006 MR1Q95460 341 aa10.7□□□□□ -0.7
VPS39-201ENST00000318006 RAB39BQ96DA2 213 aa10.7□□□□□ -0.7
VPS39-201ENST00000318006 YIPF6Q96EC8 236 aa10.7□□□□□ -0.7
VPS39-201ENST00000318006 HCAR1Q9BXC0 346 aa10.7□□□□□ -0.7
VPS39-201ENST00000318006 DEFB126Q9BYW3 111 aa10.7□□□□□ -0.7
VPS39-201ENST00000318006 PLSCR3Q9NRY6 295 aa10.7□□□□□ -0.7
VPS39-201ENST00000318006 KPTNQ9Y664 436 aa10.7□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms