RNA–Protein interactions for RNA: ENST00000311351.8

LSM1-201, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM1, Length 1,147 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-201ENST00000311351 METTL21CQ5VZV1 264 aa14.38□□□□□ -0.11
LSM1-201ENST00000311351 C20orf204Q6ZNR8 217 aa14.38□□□□□ -0.11
LSM1-201ENST00000311351 HIPK4Q8NE63 616 aa14.38□□□□□ -0.11
LSM1-201ENST00000311351 OR9K2Q8NGE7 335 aa14.38□□□□□ -0.11
LSM1-201ENST00000311351 HSD17B8Q92506 261 aa14.38□□□□□ -0.11
LSM1-201ENST00000311351 SPATA5L1Q9BVQ7 753 aa14.38□□□□□ -0.11
LSM1-201ENST00000311351 RPS6KB2Q9UBS0 482 aa14.38□□□□□ -0.11
LSM1-201ENST00000311351 OR5H1A6NKK0 313 aa14.37□□□□□ -0.11
LSM1-201ENST00000311351 ELOA3DA6NLF2 546 aaPredicted RBP14.37□□□□□ -0.11
LSM1-201ENST00000311351 AHSA1O95433 338 aa14.37□□□□□ -0.11
LSM1-201ENST00000311351 ITGA5P08648 1049 aa14.37□□□□□ -0.11
LSM1-201ENST00000311351 VIMP08670 466 aaKnown RBP14.37□□□□□ -0.11
LSM1-201ENST00000311351 PTNP21246 168 aa14.37□□□□□ -0.11
LSM1-201ENST00000311351 RPS5P46782 204 aaKnown RBP14.37□□□□□ -0.11
LSM1-201ENST00000311351 ARFIP2P53365 341 aa14.37□□□□□ -0.11
LSM1-201ENST00000311351 PCBP3P57721 371 aaKnown RBP14.37□□□□□ -0.11
LSM1-201ENST00000311351 RGS8P57771 180 aaPredicted RBP14.37□□□□□ -0.11
LSM1-201ENST00000311351 PPA1Q15181 289 aa14.37□□□□□ -0.11
LSM1-201ENST00000311351 ELOA3BQ3SY89 546 aa14.37□□□□□ -0.11
LSM1-201ENST00000311351 NCMAPQ5T1S8 102 aa14.37□□□□□ -0.11
LSM1-201ENST00000311351 C6orf89Q6UWU4 347 aa14.37□□□□□ -0.11
LSM1-201ENST00000311351 GPAT4Q86UL3 456 aa14.37□□□□□ -0.11
LSM1-201ENST00000311351 ARMC8Q8IUR7 673 aa14.37□□□□□ -0.11
LSM1-201ENST00000311351 P3H2Q8IVL5 708 aa14.37□□□□□ -0.11
LSM1-201ENST00000311351 SMYD1Q8NB12 490 aa14.37□□□□□ -0.11
LSM1-201ENST00000311351 C11orf65Q8NCR3 313 aa14.37□□□□□ -0.11
LSM1-201ENST00000311351 ELOA3Q8NG57 546 aa14.37□□□□□ -0.11
LSM1-201ENST00000311351 STK35Q8TDR2 534 aa14.37□□□□□ -0.11
LSM1-201ENST00000311351 TSPEARQ8WU66 669 aa14.37□□□□□ -0.11
LSM1-201ENST00000311351 NEUROG1Q92886 237 aa14.37□□□□□ -0.11
LSM1-201ENST00000311351 SLC25A36Q96CQ1 311 aa14.37□□□□□ -0.11
LSM1-201ENST00000311351 KTI12Q96EK9 354 aaPredicted RBP14.37□□□□□ -0.11
LSM1-201ENST00000311351 ZNF385AQ96PM9 386 aaKnown RBP14.37□□□□□ -0.11
LSM1-201ENST00000311351 ZNF607Q96SK3 696 aa14.37□□□□□ -0.11
LSM1-201ENST00000311351 PTDSS2Q9BVG9 487 aa14.37□□□□□ -0.11
LSM1-201ENST00000311351 SLC7A10Q9NS82 523 aa14.37□□□□□ -0.11
LSM1-201ENST00000311351 ASB6Q9NWX5 421 aa14.37□□□□□ -0.11
LSM1-201ENST00000311351 NPAP1Q9NZP6 1156 aa14.37□□□□□ -0.11
LSM1-201ENST00000311351 SEC14L4Q9UDX3 406 aa14.37□□□□□ -0.11
LSM1-201ENST00000311351 TESQ9UGI8 421 aaKnown RBP14.37□□□□□ -0.11
LSM1-201ENST00000311351 PRDM4Q9UKN5 801 aa14.37□□□□□ -0.11
LSM1-201ENST00000311351 RNF115Q9Y4L5 304 aa14.37□□□□□ -0.11
LSM1-201ENST00000311351 PLCE1Q9P212 2302 aa14.37□□□□□ -0.11
LSM1-201ENST00000311351 IGKV1D-42A0A075B6H8 117 aa14.36□□□□□ -0.11
LSM1-201ENST00000311351 A0A1W2PR80 420 aa14.36□□□□□ -0.11
LSM1-201ENST00000311351 CIB4A0PJX0 185 aa14.36□□□□□ -0.11
LSM1-201ENST00000311351 PRORSD1PA6NEY8 169 aa14.36□□□□□ -0.11
LSM1-201ENST00000311351 CCT8L1PA6NM43 557 aa14.36□□□□□ -0.11
LSM1-201ENST00000311351 FTCDNL1E5RQL4 147 aa14.36□□□□□ -0.11
LSM1-201ENST00000311351 HS3ST1O14792 307 aa14.36□□□□□ -0.11
LSM1-201ENST00000311351 SMPD2O60906 423 aa14.36□□□□□ -0.11
LSM1-201ENST00000311351 MFN2O95140 757 aa14.36□□□□□ -0.11
LSM1-201ENST00000311351 HOXC12P31275 282 aa14.36□□□□□ -0.11
LSM1-201ENST00000311351 NCALDP61601 193 aa14.36□□□□□ -0.11
LSM1-201ENST00000311351 NKX6-1P78426 367 aaPredicted RBP14.36□□□□□ -0.11
LSM1-201ENST00000311351 BSPH1Q075Z2 132 aa14.36□□□□□ -0.11
LSM1-201ENST00000311351 TRMT5Q32P41 509 aaKnown RBP14.36□□□□□ -0.11
LSM1-201ENST00000311351 ALG10BQ5I7T1 473 aa14.36□□□□□ -0.11
LSM1-201ENST00000311351 TSPO2Q5TGU0 170 aa14.36□□□□□ -0.11
LSM1-201ENST00000311351 ADAM5Q6NVV9 412 aa14.36□□□□□ -0.11
LSM1-201ENST00000311351 NET1Q7Z628 596 aaPredicted RBP14.36□□□□□ -0.11
LSM1-201ENST00000311351 LSMEM1Q8N8F7 131 aa14.36□□□□□ -0.11
LSM1-201ENST00000311351 ZIC4Q8N9L1 334 aa14.36□□□□□ -0.11
LSM1-201ENST00000311351 KBTBD8Q8NFY9 601 aa14.36□□□□□ -0.11
LSM1-201ENST00000311351 OR52N5Q8NH56 324 aa14.36□□□□□ -0.11
LSM1-201ENST00000311351 LILRB1Q8NHL6 650 aaPredicted RBP14.36□□□□□ -0.11
LSM1-201ENST00000311351 AKAP1Q92667 903 aaKnown RBP eCLIP14.36□□□□□ -0.11
LSM1-201ENST00000311351 PIGTQ969N2 578 aa14.36□□□□□ -0.11
LSM1-201ENST00000311351 TMEM45BQ96B21 275 aa14.36□□□□□ -0.11
LSM1-201ENST00000311351 PERPQ96FX8 193 aa14.36□□□□□ -0.11
LSM1-201ENST00000311351 PIP5K1AQ99755 562 aa14.36□□□□□ -0.11
LSM1-201ENST00000311351 ESRP2Q9H6T0 727 aaKnown RBP14.36□□□□□ -0.11
LSM1-201ENST00000311351 KAT8Q9H7Z6 458 aaKnown RBP14.36□□□□□ -0.11
LSM1-201ENST00000311351 NGBQ9NPG2 151 aa14.36□□□□□ -0.11
LSM1-201ENST00000311351 TAS2R16Q9NYV7 291 aa14.36□□□□□ -0.11
LSM1-201ENST00000311351 DPRXA6NFQ7 191 aa14.35□□□□□ -0.11
LSM1-201ENST00000311351 M0R3H8 397 aa14.35□□□□□ -0.11
LSM1-201ENST00000311351 PDLIM1O00151 329 aa14.35□□□□□ -0.11
LSM1-201ENST00000311351 FXYD1O00168 92 aa14.35□□□□□ -0.11
LSM1-201ENST00000311351 TPST2O60704 377 aa14.35□□□□□ -0.11
LSM1-201ENST00000311351 SERPINB7O75635 380 aa14.35□□□□□ -0.11
LSM1-201ENST00000311351 CD3EP07766 207 aa14.35□□□□□ -0.11
LSM1-201ENST00000311351 PNMTP11086 282 aa14.35□□□□□ -0.11
LSM1-201ENST00000311351 RBBP4Q09028 425 aa14.35□□□□□ -0.11
LSM1-201ENST00000311351 KLF10Q13118 480 aa14.35□□□□□ -0.11
LSM1-201ENST00000311351 RABL3Q5HYI8 236 aa14.35□□□□□ -0.11
LSM1-201ENST00000311351 Q5PR19 223 aa14.35□□□□□ -0.11
LSM1-201ENST00000311351 TIMM23BQ5SRD1 257 aa14.35□□□□□ -0.11
LSM1-201ENST00000311351 REP15Q6BDI9 236 aa14.35□□□□□ -0.11
LSM1-201ENST00000311351 TMEM225Q6GV28 225 aa14.35□□□□□ -0.11
LSM1-201ENST00000311351 AAED1Q7RTV5 226 aa14.35□□□□□ -0.11
LSM1-201ENST00000311351 GPR32P1Q8NGA4 272 aa14.35□□□□□ -0.11
LSM1-201ENST00000311351 OR10A6Q8NH74 314 aa14.35□□□□□ -0.11
LSM1-201ENST00000311351 MFSD8Q8NHS3 518 aa14.35□□□□□ -0.11
LSM1-201ENST00000311351 RNF217Q8TC41 542 aa14.35□□□□□ -0.11
LSM1-201ENST00000311351 IGFBPL1Q8WX77 278 aa14.35□□□□□ -0.11
LSM1-201ENST00000311351 USB1Q9BQ65 265 aaKnown RBP14.35□□□□□ -0.11
LSM1-201ENST00000311351 SF3B5Q9BWJ5 86 aaKnown RBP14.35□□□□□ -0.11
LSM1-201ENST00000311351 TRIM2Q9C040 744 aa14.35□□□□□ -0.11
LSM1-201ENST00000311351 PIF1Q9H611 641 aa14.35□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms