RNA–Protein interactions for RNA: ENST00000292476.9

CPSF4-201, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CPSF4, Length 1,691 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-201ENST00000292476 RCBTB2O95199 551 aa15.35■□□□□ 0.05
CPSF4-201ENST00000292476 IGKV1D-16P01601 117 aa15.35■□□□□ 0.05
CPSF4-201ENST00000292476 ZNF28P17035 718 aa15.35■□□□□ 0.05
CPSF4-201ENST00000292476 IL12BP29460 328 aa15.35■□□□□ 0.05
CPSF4-201ENST00000292476 RNF144AP50876 292 aaPredicted RBP15.35■□□□□ 0.05
CPSF4-201ENST00000292476 GPR143P51810 404 aa15.35■□□□□ 0.05
CPSF4-201ENST00000292476 MXD1Q05195 221 aa15.35■□□□□ 0.05
CPSF4-201ENST00000292476 BAK1Q16611 211 aa15.35■□□□□ 0.05
CPSF4-201ENST00000292476 PAPD4Q6PIY7 484 aaKnown RBP15.35■□□□□ 0.05
CPSF4-201ENST00000292476 TMPRSS12Q86WS5 348 aa15.35■□□□□ 0.05
CPSF4-201ENST00000292476 MEX3DQ86XN8 651 aaKnown RBP15.35■□□□□ 0.05
CPSF4-201ENST00000292476 C9orf40Q8IXQ3 194 aa15.35■□□□□ 0.05
CPSF4-201ENST00000292476 LNX2Q8N448 690 aa15.35■□□□□ 0.05
CPSF4-201ENST00000292476 ZNF321PQ8N8H1 164 aa15.35■□□□□ 0.05
CPSF4-201ENST00000292476 NUBPLQ8TB37 319 aa15.35■□□□□ 0.05
CPSF4-201ENST00000292476 FANK1Q8TC84 345 aa15.35■□□□□ 0.05
CPSF4-201ENST00000292476 TMEM203Q969S6 136 aa15.35■□□□□ 0.05
CPSF4-201ENST00000292476 DIRAS2Q96HU8 199 aa15.35■□□□□ 0.05
CPSF4-201ENST00000292476 SOSTQ9BQB4 213 aa15.35■□□□□ 0.05
CPSF4-201ENST00000292476 TRIM2Q9C040 744 aa15.35■□□□□ 0.05
CPSF4-201ENST00000292476 FAM117AQ9C073 453 aa15.35■□□□□ 0.05
CPSF4-201ENST00000292476 ADAM30Q9UKF2 790 aa15.35■□□□□ 0.05
CPSF4-201ENST00000292476 PADI1Q9ULC6 663 aa15.35■□□□□ 0.05
CPSF4-201ENST00000292476 BAIAP2Q9UQB8 552 aa15.35■□□□□ 0.05
CPSF4-201ENST00000292476 NTNG1Q9Y2I2 539 aa15.35■□□□□ 0.05
CPSF4-201ENST00000292476 MSRB2Q9Y3D2 182 aa15.35■□□□□ 0.05
CPSF4-201ENST00000292476 AKAP13Q12802 2813 aa15.35■□□□□ 0.05
CPSF4-201ENST00000292476 HTR3EA5X5Y0 456 aa15.35■□□□□ 0.05
CPSF4-201ENST00000292476 SERINC4A6NH21 518 aa15.35■□□□□ 0.05
CPSF4-201ENST00000292476 LYPD3O95274 346 aa15.35■□□□□ 0.05
CPSF4-201ENST00000292476 CLEC2LP0C7M8 214 aa15.35■□□□□ 0.05
CPSF4-201ENST00000292476 PNLIPRP2P54317 469 aa15.35■□□□□ 0.05
CPSF4-201ENST00000292476 RNF4P78317 190 aa15.35■□□□□ 0.05
CPSF4-201ENST00000292476 HOXC5Q00444 222 aa15.35■□□□□ 0.05
CPSF4-201ENST00000292476 NNATQ16517 81 aa15.35■□□□□ 0.05
CPSF4-201ENST00000292476 NIPAL3Q6P499 406 aa15.35■□□□□ 0.05
CPSF4-201ENST00000292476 MZT2AQ6P582 158 aa15.35■□□□□ 0.05
CPSF4-201ENST00000292476 ZNF613Q6PF04 617 aa15.35■□□□□ 0.05
CPSF4-201ENST00000292476 ZNF322Q6U7Q0 402 aaPredicted RBP15.35■□□□□ 0.05
CPSF4-201ENST00000292476 TMPRSS11FQ6ZWK6 438 aa15.35■□□□□ 0.05
CPSF4-201ENST00000292476 TMEM239Q8WW34 195 aa15.35■□□□□ 0.05
CPSF4-201ENST00000292476 SAMD8Q96LT4 415 aa15.35■□□□□ 0.05
CPSF4-201ENST00000292476 HS6ST2Q96MM7 605 aa15.35■□□□□ 0.05
CPSF4-201ENST00000292476 KCNN2Q9H2S1 579 aa15.35■□□□□ 0.05
CPSF4-201ENST00000292476 OR52D1Q9H346 318 aa15.35■□□□□ 0.05
CPSF4-201ENST00000292476 HINT3Q9NQE9 182 aaKnown RBP15.35■□□□□ 0.05
CPSF4-201ENST00000292476 YARS2Q9Y2Z4 477 aaKnown RBP15.35■□□□□ 0.05
CPSF4-201ENST00000292476 B3GALT1Q9Y5Z6 326 aa15.35■□□□□ 0.05
CPSF4-201ENST00000292476 LOC102723996A0A087X1L8 192 aa15.34■□□□□ 0.05
CPSF4-201ENST00000292476 NPIPA5A0A0B4J1W7 369 aa15.34■□□□□ 0.05
CPSF4-201ENST00000292476 NPIPA7E9PJI5 369 aa15.34■□□□□ 0.05
CPSF4-201ENST00000292476 BHLHE40O14503 412 aa15.34■□□□□ 0.05
CPSF4-201ENST00000292476 CDC42EP2O14613 210 aa15.34■□□□□ 0.05
CPSF4-201ENST00000292476 REM1O75628 298 aa15.34■□□□□ 0.05
CPSF4-201ENST00000292476 CCNKO75909 580 aa15.34■□□□□ 0.05
CPSF4-201ENST00000292476 STK17BO94768 372 aa15.34■□□□□ 0.05
CPSF4-201ENST00000292476 APOL3O95236 402 aa15.34■□□□□ 0.05
CPSF4-201ENST00000292476 KRT8P05787 483 aa15.34■□□□□ 0.05
CPSF4-201ENST00000292476 NPIPA8P0DM63 369 aa15.34■□□□□ 0.05
CPSF4-201ENST00000292476 TBXA2RP21731 343 aa15.34■□□□□ 0.05
CPSF4-201ENST00000292476 NR0B1P51843 470 aaKnown RBP15.34■□□□□ 0.05
CPSF4-201ENST00000292476 CTBP2P56545 445 aa15.34■□□□□ 0.05
CPSF4-201ENST00000292476 PLCXD2Q0VAA5 305 aa15.34■□□□□ 0.05
CPSF4-201ENST00000292476 TRAM1Q15629 374 aa15.34■□□□□ 0.05
CPSF4-201ENST00000292476 KLHL26Q53HC5 615 aa15.34■□□□□ 0.05
CPSF4-201ENST00000292476 ZMAT1Q5H9K5 638 aa15.34■□□□□ 0.05
CPSF4-201ENST00000292476 C6orf15Q6UXA7 325 aaPredicted RBP15.34■□□□□ 0.05
CPSF4-201ENST00000292476 MEPCEQ7L2J0 689 aaKnown RBP15.34■□□□□ 0.05
CPSF4-201ENST00000292476 ZAR1Q86SH2 424 aa15.34■□□□□ 0.05
CPSF4-201ENST00000292476 LHFPL3Q86UP9 236 aa15.34■□□□□ 0.05
CPSF4-201ENST00000292476 CDK20Q8IZL9 346 aa15.34■□□□□ 0.05
CPSF4-201ENST00000292476 ACBD7Q8N6N7 88 aa15.34■□□□□ 0.05
CPSF4-201ENST00000292476 ZNF441Q8N8Z8 693 aa15.34■□□□□ 0.05
CPSF4-201ENST00000292476 ZSCAN1Q8NBB4 408 aa15.34■□□□□ 0.05
CPSF4-201ENST00000292476 NFAM1Q8NET5 270 aaPredicted RBP15.34■□□□□ 0.05
CPSF4-201ENST00000292476 OR4F15Q8NGB8 312 aa15.34■□□□□ 0.05
CPSF4-201ENST00000292476 OR2Y1Q8NGV0 311 aa15.34■□□□□ 0.05
CPSF4-201ENST00000292476 ACOT12Q8WYK0 555 aa15.34■□□□□ 0.05
CPSF4-201ENST00000292476 SECISBP2Q96T21 854 aaKnown RBP15.34■□□□□ 0.05
CPSF4-201ENST00000292476 TM9SF2Q99805 663 aa15.34■□□□□ 0.05
CPSF4-201ENST00000292476 B3GNT4Q9C0J1 378 aa15.34■□□□□ 0.05
CPSF4-201ENST00000292476 PISDQ9UG56 409 aa15.34■□□□□ 0.05
CPSF4-201ENST00000292476 ZNF221Q9UK13 617 aa15.34■□□□□ 0.05
CPSF4-201ENST00000292476 KNTC1P50748 2209 aa15.34■□□□□ 0.05
CPSF4-201ENST00000292476 CEP295Q9C0D2 2601 aa15.34■□□□□ 0.05
CPSF4-201ENST00000292476 CENPVL1A0A0U1RR11 272 aa15.33■□□□□ 0.04
CPSF4-201ENST00000292476 C1QTNF9BB2RNN3 333 aa15.33■□□□□ 0.04
CPSF4-201ENST00000292476 GABRPO00591 440 aa15.33■□□□□ 0.04
CPSF4-201ENST00000292476 CASKO14936 926 aa15.33■□□□□ 0.04
CPSF4-201ENST00000292476 TMCC2O75069 709 aa15.33■□□□□ 0.04
CPSF4-201ENST00000292476 CH25HO95992 272 aa15.33■□□□□ 0.04
CPSF4-201ENST00000292476 CSTAP01040 98 aa15.33■□□□□ 0.04
CPSF4-201ENST00000292476 NGFRP08138 427 aa15.33■□□□□ 0.04
CPSF4-201ENST00000292476 CSF3P09919 207 aa15.33■□□□□ 0.04
CPSF4-201ENST00000292476 RAB40ALP0C0E4 278 aa15.33■□□□□ 0.04
CPSF4-201ENST00000292476 C1QTNF9P0C862 333 aa15.33■□□□□ 0.04
CPSF4-201ENST00000292476 BMP7P18075 431 aa15.33■□□□□ 0.04
CPSF4-201ENST00000292476 PAICSP22234 425 aaKnown RBP15.33■□□□□ 0.04
CPSF4-201ENST00000292476 HTR2AP28223 471 aa15.33■□□□□ 0.04
CPSF4-201ENST00000292476 DDOSTP39656 456 aa15.33■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 126.7 ms