RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 OR2B2Q9GZK3 357 aa15.23■□□□□ 0.03
VPS54-201ENST00000272322 FLVCR2Q9UPI3 526 aa15.23■□□□□ 0.03
VPS54-201ENST00000272322 RPS5P46782 204 aaKnown RBP15.23■□□□□ 0.03
VPS54-201ENST00000272322 CTXN1P60606 82 aa15.23■□□□□ 0.03
VPS54-201ENST00000272322 MRPL28Q13084 256 aaKnown RBP15.23■□□□□ 0.03
VPS54-201ENST00000272322 EFR3AQ14156 821 aa15.23■□□□□ 0.03
VPS54-201ENST00000272322 FCN2Q15485 313 aa15.23■□□□□ 0.03
VPS54-201ENST00000272322 SLC35F2Q8IXU6 374 aa15.23■□□□□ 0.03
VPS54-201ENST00000272322 RNF113BQ8IZP6 322 aaKnown RBP15.23■□□□□ 0.03
VPS54-201ENST00000272322 GRPEL2Q8TAA5 225 aa15.23■□□□□ 0.03
VPS54-201ENST00000272322 RTN4RQ9BZR6 473 aa15.23■□□□□ 0.03
VPS54-201ENST00000272322 NXF5Q9H1B4 397 aaKnown RBP15.23■□□□□ 0.03
VPS54-201ENST00000272322 MOV10Q9HCE1 1003 aaKnown RBP15.23■□□□□ 0.03
VPS54-201ENST00000272322 NTMQ9P121 344 aa15.23■□□□□ 0.03
VPS54-201ENST00000272322 PCNX3Q9H6A9 2034 aa15.23■□□□□ 0.03
VPS54-201ENST00000272322 MN1Q10571 1320 aaPredicted RBP15.23■□□□□ 0.03
VPS54-201ENST00000272322 PRR32B1ATL7 298 aa15.23■□□□□ 0.03
VPS54-201ENST00000272322 OPN1LWP04000 364 aa15.23■□□□□ 0.03
VPS54-201ENST00000272322 TOMM34Q15785 309 aaPredicted RBP15.23■□□□□ 0.03
VPS54-201ENST00000272322 ULK3Q6PHR2 472 aa15.23■□□□□ 0.03
VPS54-201ENST00000272322 METAP1DQ6UB28 335 aaPredicted RBP15.23■□□□□ 0.03
VPS54-201ENST00000272322 LGALS14Q8TCE9 139 aa15.23■□□□□ 0.03
VPS54-201ENST00000272322 NR4A3Q92570 626 aa15.23■□□□□ 0.03
VPS54-201ENST00000272322 CTHRC1Q96CG8 243 aa15.23■□□□□ 0.03
VPS54-201ENST00000272322 VSTM2LQ96N03 204 aa15.23■□□□□ 0.03
VPS54-201ENST00000272322 STACQ99469 402 aa15.23■□□□□ 0.03
VPS54-201ENST00000272322 SYNDIG1Q9H7V2 258 aa15.23■□□□□ 0.03
VPS54-201ENST00000272322 ADAM30Q9UKF2 790 aa15.23■□□□□ 0.03
VPS54-201ENST00000272322 A0A087WV62 115 aa15.22■□□□□ 0.03
VPS54-201ENST00000272322 J3QRE1 110 aa15.22■□□□□ 0.03
VPS54-201ENST00000272322 HCRTR2O43614 444 aa15.22■□□□□ 0.03
VPS54-201ENST00000272322 CDKN2AP42771 156 aaKnown RBP15.22■□□□□ 0.03
VPS54-201ENST00000272322 CSNK1EP49674 416 aaKnown RBP15.22■□□□□ 0.03
VPS54-201ENST00000272322 UBXN2BQ14CS0 331 aa15.22■□□□□ 0.03
VPS54-201ENST00000272322 SLC35D2Q76EJ3 337 aa15.22■□□□□ 0.03
VPS54-201ENST00000272322 TOMM5Q8N4H5 51 aa15.22■□□□□ 0.03
VPS54-201ENST00000272322 PGLYRP3Q96LB9 341 aa15.22■□□□□ 0.03
VPS54-201ENST00000272322 CNN2Q99439 309 aaKnown RBP15.22■□□□□ 0.03
VPS54-201ENST00000272322 CDCA3Q99618 268 aaPredicted RBP15.22■□□□□ 0.03
VPS54-201ENST00000272322 CHIAQ9BZP6 476 aa15.22■□□□□ 0.03
VPS54-201ENST00000272322 TRIM2Q9C040 744 aa15.22■□□□□ 0.03
VPS54-201ENST00000272322 SEMA6CQ9H3T2 930 aa15.22■□□□□ 0.03
VPS54-201ENST00000272322 NANSQ9NR45 359 aa15.22■□□□□ 0.03
VPS54-201ENST00000272322 POLHQ9Y253 713 aa15.22■□□□□ 0.03
VPS54-201ENST00000272322 MRPS33Q9Y291 106 aaKnown RBP15.22■□□□□ 0.03
VPS54-201ENST00000272322 AHCTF1Q8WYP5 2266 aa15.22■□□□□ 0.03
VPS54-201ENST00000272322 MEIS3P1A6NDR6 274 aa15.22■□□□□ 0.03
VPS54-201ENST00000272322 TNFRSF10CO14798 259 aa15.22■□□□□ 0.03
VPS54-201ENST00000272322 MAS1P04201 325 aa15.22■□□□□ 0.03
VPS54-201ENST00000272322 PROS1P07225 676 aa15.22■□□□□ 0.03
VPS54-201ENST00000272322 MAP1BP46821 2468 aaKnown RBP15.22■□□□□ 0.03
VPS54-201ENST00000272322 SIRPAP78324 504 aa15.22■□□□□ 0.03
VPS54-201ENST00000272322 CDK10Q15131 360 aa15.22■□□□□ 0.03
VPS54-201ENST00000272322 TMEM44Q2T9K0 475 aa15.22■□□□□ 0.03
VPS54-201ENST00000272322 LRRC69Q6ZNQ3 347 aa15.22■□□□□ 0.03
VPS54-201ENST00000272322 SIAH3Q8IW03 269 aa15.22■□□□□ 0.03
VPS54-201ENST00000272322 THEM6Q8WUY1 208 aa15.22■□□□□ 0.03
VPS54-201ENST00000272322 MS4A3Q96HJ5 214 aa15.22■□□□□ 0.03
VPS54-201ENST00000272322 ENTPD2Q9Y5L3 495 aa15.22■□□□□ 0.03
VPS54-201ENST00000272322 ORC5O43913 435 aa15.22■□□□□ 0.03
VPS54-201ENST00000272322 CDC40O60508 579 aaKnown RBP eCLIP15.22■□□□□ 0.03
VPS54-201ENST00000272322 COQ9O75208 318 aa15.22■□□□□ 0.03
VPS54-201ENST00000272322 YES1P07947 543 aa15.22■□□□□ 0.03
VPS54-201ENST00000272322 ARL4DP49703 201 aa15.22■□□□□ 0.03
VPS54-201ENST00000272322 GBX2P52951 348 aaPredicted RBP15.22■□□□□ 0.03
VPS54-201ENST00000272322 ZNF613Q6PF04 617 aa15.22■□□□□ 0.03
VPS54-201ENST00000272322 UXS1Q8NBZ7 420 aa15.22■□□□□ 0.03
VPS54-201ENST00000272322 PPP1R14AQ96A00 147 aa15.22■□□□□ 0.03
VPS54-201ENST00000272322 ST6GALNAC1Q9NSC7 600 aaPredicted RBP15.22■□□□□ 0.03
VPS54-201ENST00000272322 POMT2Q9UKY4 750 aa15.22■□□□□ 0.03
VPS54-201ENST00000272322 MMP17Q9ULZ9 603 aa15.22■□□□□ 0.03
VPS54-201ENST00000272322 TMEM5Q9Y2B1 443 aa15.22■□□□□ 0.03
VPS54-201ENST00000272322 A0A0A6YYJ9 748 aa15.21■□□□□ 0.03
VPS54-201ENST00000272322 SERINC4A6NH21 518 aa15.21■□□□□ 0.03
VPS54-201ENST00000272322 FLRT2O43155 660 aa15.21■□□□□ 0.03
VPS54-201ENST00000272322 SCO2O43819 266 aa15.21■□□□□ 0.03
VPS54-201ENST00000272322 RPS4Y1P22090 263 aaKnown RBP15.21■□□□□ 0.03
VPS54-201ENST00000272322 NANOS3P60323 173 aaKnown RBP15.21■□□□□ 0.03
VPS54-201ENST00000272322 SEMA4CQ9C0C4 833 aa15.21■□□□□ 0.03
VPS54-201ENST00000272322 SCML1Q9UN30 329 aa15.21■□□□□ 0.03
VPS54-201ENST00000272322 SATB2Q9UPW6 733 aa15.21■□□□□ 0.03
VPS54-201ENST00000272322 KNTC1P50748 2209 aa15.21■□□□□ 0.03
VPS54-201ENST00000272322 ARHGEF9O43307 516 aa15.21■□□□□ 0.03
VPS54-201ENST00000272322 ATP12AP54707 1039 aa15.21■□□□□ 0.03
VPS54-201ENST00000272322 YPEL5P62699 121 aa15.21■□□□□ 0.03
VPS54-201ENST00000272322 CEP78Q5JTW2 689 aa15.21■□□□□ 0.03
VPS54-201ENST00000272322 STPG1Q5TH74 334 aa15.21■□□□□ 0.03
VPS54-201ENST00000272322 FCRLAQ7L513 359 aa15.21■□□□□ 0.03
VPS54-201ENST00000272322 NANOGNBQ7Z5D8 188 aa15.21■□□□□ 0.03
VPS54-201ENST00000272322 OR6N2Q8NGY6 317 aa15.21■□□□□ 0.03
VPS54-201ENST00000272322 KTI12Q96EK9 354 aaPredicted RBP15.21■□□□□ 0.03
VPS54-201ENST00000272322 SPI1P17947 270 aa15.2■□□□□ 0.02
VPS54-201ENST00000272322 SSTR2P30874 369 aa15.2■□□□□ 0.02
VPS54-201ENST00000272322 THBS2P35442 1172 aa15.2■□□□□ 0.02
VPS54-201ENST00000272322 GRK6P43250 576 aa15.2■□□□□ 0.02
VPS54-201ENST00000272322 MTNR1BP49286 362 aa15.2■□□□□ 0.02
VPS54-201ENST00000272322 ARHGAP11AQ6P4F7 1023 aa15.2■□□□□ 0.02
VPS54-201ENST00000272322 DPY19L4Q7Z388 723 aa15.2■□□□□ 0.02
VPS54-201ENST00000272322 TSTD1Q8NFU3 115 aa15.2■□□□□ 0.02
VPS54-201ENST00000272322 OR10AC1Q8NH08 325 aa15.2■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms