RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 PBX4Q9BYU1 374 aa9.8□□□□□ -0.84
USP28-201ENST00000003302 KIR3DX1Q9H7L2 352 aa9.8□□□□□ -0.84
USP28-201ENST00000003302 DNAJB12Q9NXW2 375 aaKnown RBP9.8□□□□□ -0.84
USP28-201ENST00000003302 CHRNA9Q9UGM1 479 aa9.8□□□□□ -0.84
USP28-201ENST00000003302 CLDN16Q9Y5I7 305 aa9.8□□□□□ -0.84
USP28-201ENST00000003302 MYO7BQ6PIF6 2116 aa9.8□□□□□ -0.84
USP28-201ENST00000003302 DMXL1Q9Y485 3027 aa9.79□□□□□ -0.84
USP28-201ENST00000003302 MAP3K8P41279 467 aa9.79□□□□□ -0.84
USP28-201ENST00000003302 EFNA3P52797 238 aa9.79□□□□□ -0.84
USP28-201ENST00000003302 ATP12AP54707 1039 aa9.79□□□□□ -0.84
USP28-201ENST00000003302 POMZP3Q6PJE2 187 aa9.79□□□□□ -0.84
USP28-201ENST00000003302 SLC22A18ASQ8N1D0 253 aa9.79□□□□□ -0.84
USP28-201ENST00000003302 RCBTB1Q8NDN9 531 aa9.79□□□□□ -0.84
USP28-201ENST00000003302 GPR137Q96N19 417 aa9.79□□□□□ -0.84
USP28-201ENST00000003302 NIPAL2Q9H841 368 aa9.79□□□□□ -0.84
USP28-201ENST00000003302 C19orf53Q9UNZ5 99 aaPredicted RBP9.79□□□□□ -0.84
USP28-201ENST00000003302 TRBV2A0A0J9YWF9 115 aa9.79□□□□□ -0.84
USP28-201ENST00000003302 CACNB4O00305 520 aaPredicted RBP9.79□□□□□ -0.84
USP28-201ENST00000003302 MT-ND5P03915 603 aa9.79□□□□□ -0.84
USP28-201ENST00000003302 CMPK1P30085 196 aa9.79□□□□□ -0.84
USP28-201ENST00000003302 BMP8BP34820 402 aa9.79□□□□□ -0.84
USP28-201ENST00000003302 SUZ12Q15022 739 aaKnown RBP9.79□□□□□ -0.84
USP28-201ENST00000003302 CD226Q15762 336 aa9.79□□□□□ -0.84
USP28-201ENST00000003302 BMP8AQ7Z5Y6 402 aa9.79□□□□□ -0.84
USP28-201ENST00000003302 PLCZ1Q86YW0 608 aa9.79□□□□□ -0.84
USP28-201ENST00000003302 GAL3ST3Q96A11 431 aa9.79□□□□□ -0.84
USP28-201ENST00000003302 SLC35A3Q9Y2D2 325 aa9.79□□□□□ -0.84
USP28-201ENST00000003302 A0A0A6YYC8 382 aaPredicted RBP9.79□□□□□ -0.84
USP28-201ENST00000003302 CDC14CA4D256 554 aa9.79□□□□□ -0.84
USP28-201ENST00000003302 I3L1I5 382 aaPredicted RBP9.79□□□□□ -0.84
USP28-201ENST00000003302 BRINP1O60477 761 aa9.79□□□□□ -0.84
USP28-201ENST00000003302 SLC22A5O76082 557 aa9.79□□□□□ -0.84
USP28-201ENST00000003302 KDM4BO94953 1096 aa9.79□□□□□ -0.84
USP28-201ENST00000003302 ST6GAL1P15907 406 aa9.79□□□□□ -0.84
USP28-201ENST00000003302 IFNGR2P38484 337 aa9.79□□□□□ -0.84
USP28-201ENST00000003302 SQSTM1Q13501 440 aa9.79□□□□□ -0.84
USP28-201ENST00000003302 CDK5R1Q15078 307 aa9.79□□□□□ -0.84
USP28-201ENST00000003302 ZMYND11Q15326 602 aa9.79□□□□□ -0.84
USP28-201ENST00000003302 AMZ1Q400G9 498 aa9.79□□□□□ -0.84
USP28-201ENST00000003302 C1orf53Q5VUE5 145 aa9.79□□□□□ -0.84
USP28-201ENST00000003302 B3GNTL1Q67FW5 361 aaPredicted RBP9.79□□□□□ -0.84
USP28-201ENST00000003302 FIGLAQ6QHK4 219 aa9.79□□□□□ -0.84
USP28-201ENST00000003302 FAM98AQ8NCA5 519 aaKnown RBP9.79□□□□□ -0.84
USP28-201ENST00000003302 SP7Q8TDD2 431 aaPredicted RBP9.79□□□□□ -0.84
USP28-201ENST00000003302 PCDHGA9Q9Y5G4 932 aaKnown RBP9.79□□□□□ -0.84
USP28-201ENST00000003302 A6NCN8 305 aa9.79□□□□□ -0.84
USP28-201ENST00000003302 NUPL2O15504 423 aaKnown RBP9.79□□□□□ -0.84
USP28-201ENST00000003302 CXCL2P19875 107 aa9.79□□□□□ -0.84
USP28-201ENST00000003302 TMPRSS11FQ6ZWK6 438 aa9.79□□□□□ -0.84
USP28-201ENST00000003302 LINGO2Q7L985 606 aa9.79□□□□□ -0.84
USP28-201ENST00000003302 CHMP1BQ7LBR1 199 aa9.79□□□□□ -0.84
USP28-201ENST00000003302 NLRC3Q7RTR2 1065 aa9.79□□□□□ -0.84
USP28-201ENST00000003302 WDFY1Q8IWB7 410 aa9.79□□□□□ -0.84
USP28-201ENST00000003302 NPEPL1Q8NDH3 523 aa9.79□□□□□ -0.84
USP28-201ENST00000003302 OR52L1Q8NGH7 329 aa9.79□□□□□ -0.84
USP28-201ENST00000003302 LIN7BQ9HAP6 207 aa9.79□□□□□ -0.84
USP28-201ENST00000003302 NTMQ9P121 344 aa9.79□□□□□ -0.84
USP28-201ENST00000003302 EIF3KQ9UBQ5 218 aaKnown RBP9.79□□□□□ -0.84
USP28-201ENST00000003302 TCRBV16S1A1N1A0A5B0 115 aa9.78□□□□□ -0.84
USP28-201ENST00000003302 GNRH1P01148 92 aa9.78□□□□□ -0.84
USP28-201ENST00000003302 LTBQ06643 244 aa9.78□□□□□ -0.84
USP28-201ENST00000003302 ZNF267Q14586 743 aaPredicted RBP9.78□□□□□ -0.84
USP28-201ENST00000003302 LINC00303Q3SY05 128 aa9.78□□□□□ -0.84
USP28-201ENST00000003302 TIGD3Q6B0B8 471 aa9.78□□□□□ -0.84
USP28-201ENST00000003302 USP53Q70EK8 1073 aa9.78□□□□□ -0.84
USP28-201ENST00000003302 MDGA2Q7Z553 956 aa9.78□□□□□ -0.84
USP28-201ENST00000003302 OR4C6Q8NH72 309 aa9.78□□□□□ -0.84
USP28-201ENST00000003302 MSANTD3Q96H12 275 aa9.78□□□□□ -0.84
USP28-201ENST00000003302 NPAS1Q99742 590 aa9.78□□□□□ -0.84
USP28-201ENST00000003302 NRSN2Q9GZP1 204 aa9.78□□□□□ -0.84
USP28-201ENST00000003302 C20orf85Q9H1P6 137 aa9.78□□□□□ -0.84
USP28-201ENST00000003302 WDR76Q9H967 626 aa9.78□□□□□ -0.84
USP28-201ENST00000003302 PIPOXQ9P0Z9 390 aa9.78□□□□□ -0.84
USP28-201ENST00000003302 TMEM72A0PK05 275 aa9.78□□□□□ -0.84
USP28-201ENST00000003302 BLOC1S5-TXNDC5H3BN57 136 aa9.78□□□□□ -0.84
USP28-201ENST00000003302 I3L521 148 aa9.78□□□□□ -0.84
USP28-201ENST00000003302 LGALS8O00214 317 aa9.78□□□□□ -0.84
USP28-201ENST00000003302 NOS1APO75052 506 aaPredicted RBP9.78□□□□□ -0.84
USP28-201ENST00000003302 SLC35G6P0C7Q6 338 aa9.78□□□□□ -0.84
USP28-201ENST00000003302 ASPHD2Q6ICH7 369 aa9.78□□□□□ -0.84
USP28-201ENST00000003302 OR5M10Q6IEU7 315 aa9.78□□□□□ -0.84
USP28-201ENST00000003302 TMEM205Q6UW68 189 aa9.78□□□□□ -0.84
USP28-201ENST00000003302 TMEM92Q6UXU6 159 aa9.78□□□□□ -0.84
USP28-201ENST00000003302 PARGQ86W56 976 aa9.78□□□□□ -0.84
USP28-201ENST00000003302 FAM219AQ8IW50 185 aa9.78□□□□□ -0.84
USP28-201ENST00000003302 CXorf58Q96LI9 332 aa9.78□□□□□ -0.84
USP28-201ENST00000003302 TIMM29Q9BSF4 260 aa9.78□□□□□ -0.84
USP28-201ENST00000003302 MED31Q9Y3C7 131 aa9.78□□□□□ -0.84
USP28-201ENST00000003302 IGKV1D-42A0A075B6H8 117 aa9.78□□□□□ -0.84
USP28-201ENST00000003302 SNTNA6NMZ2 147 aa9.78□□□□□ -0.84
USP28-201ENST00000003302 ARPC1BO15143 372 aaKnown RBP9.78□□□□□ -0.84
USP28-201ENST00000003302 KCNAB3O43448 404 aa9.78□□□□□ -0.84
USP28-201ENST00000003302 EGFP01133 1207 aa9.78□□□□□ -0.84
USP28-201ENST00000003302 PUDPQ08623 228 aa9.78□□□□□ -0.84
USP28-201ENST00000003302 SNTB2Q13425 540 aaKnown RBP9.78□□□□□ -0.84
USP28-201ENST00000003302 DMRTC1Q5HYR2 192 aa9.78□□□□□ -0.84
USP28-201ENST00000003302 CREB3L2Q70SY1 520 aa9.78□□□□□ -0.84
USP28-201ENST00000003302 LINC00471Q8N535 108 aa9.78□□□□□ -0.84
USP28-201ENST00000003302 SMIM19Q96E16 107 aa9.78□□□□□ -0.84
USP28-201ENST00000003302 COQ7Q99807 217 aa9.78□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms