RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 GTF3C1Q12789 2109 aa3.17□□□□□ -1.9
SCN1A-219ENST00000641575 CLNS1AP54105 237 aaKnown RBP3.17□□□□□ -1.9
SCN1A-219ENST00000641575 CLIP2Q9UDT6 1046 aa3.17□□□□□ -1.9
SCN1A-219ENST00000641575 RRBP1Q9P2E9 1410 aaKnown RBP3.17□□□□□ -1.9
SCN1A-219ENST00000641575 RNF8O76064 485 aa3.17□□□□□ -1.9
SCN1A-219ENST00000641575 HNRNPH2P55795 449 aaKnown RBP3.17□□□□□ -1.9
SCN1A-219ENST00000641575 NAA25Q14CX7 972 aa3.17□□□□□ -1.9
SCN1A-219ENST00000641575 CFAP100Q494V2 611 aa3.17□□□□□ -1.9
SCN1A-219ENST00000641575 SPC24Q8NBT2 197 aa3.17□□□□□ -1.9
SCN1A-219ENST00000641575 RNF34Q969K3 372 aa3.17□□□□□ -1.9
SCN1A-219ENST00000641575 IFFO1Q0D2I5 559 aa3.16□□□□□ -1.9
SCN1A-219ENST00000641575 AMOTQ4VCS5 1084 aa3.16□□□□□ -1.9
SCN1A-219ENST00000641575 CEP128Q6ZU80 1094 aa3.16□□□□□ -1.9
SCN1A-219ENST00000641575 PHLDB2Q86SQ0 1253 aa3.16□□□□□ -1.9
SCN1A-219ENST00000641575 NACA2Q9H009 215 aa3.16□□□□□ -1.9
SCN1A-219ENST00000641575 ABI2Q9NYB9 513 aaPredicted RBP3.16□□□□□ -1.9
SCN1A-219ENST00000641575 CUX2O14529 1486 aa3.16□□□□□ -1.9
SCN1A-219ENST00000641575 PHF3Q92576 2039 aaKnown RBP3.16□□□□□ -1.9
SCN1A-219ENST00000641575 CBFA2T2O43439 604 aa3.16□□□□□ -1.9
SCN1A-219ENST00000641575 CDKL5O76039 1030 aa3.16□□□□□ -1.9
SCN1A-219ENST00000641575 HERC4Q5GLZ8 1057 aaPredicted RBP3.16□□□□□ -1.9
SCN1A-219ENST00000641575 KIAA2026Q5HYC2 2103 aa3.16□□□□□ -1.9
SCN1A-219ENST00000641575 E4F1Q66K89 784 aaPredicted RBP3.16□□□□□ -1.9
SCN1A-219ENST00000641575 TTC1Q99614 292 aa3.16□□□□□ -1.9
SCN1A-219ENST00000641575 ANAPC4Q9UJX5 808 aa3.16□□□□□ -1.9
SCN1A-219ENST00000641575 SMARCA2P51531 1590 aa3.16□□□□□ -1.9
SCN1A-219ENST00000641575 MED13Q9UHV7 2174 aa3.16□□□□□ -1.9
SCN1A-219ENST00000641575 SH3BP5O60239 455 aa3.16□□□□□ -1.9
SCN1A-219ENST00000641575 MCMDC2Q4G0Z9 681 aa3.16□□□□□ -1.9
SCN1A-219ENST00000641575 CCDC178Q5BJE1 867 aa3.16□□□□□ -1.9
SCN1A-219ENST00000641575 ZNF365Q70YC5 407 aa3.16□□□□□ -1.9
SCN1A-219ENST00000641575 TADA2BQ86TJ2 420 aa3.16□□□□□ -1.9
SCN1A-219ENST00000641575 UBXN4Q92575 508 aa3.16□□□□□ -1.9
SCN1A-219ENST00000641575 ZNF622Q969S3 477 aaKnown RBP eCLIP3.16□□□□□ -1.9
SCN1A-219ENST00000641575 CNNM1Q9NRU3 951 aa3.16□□□□□ -1.9
SCN1A-219ENST00000641575 CCDC144AA2RUR9 1427 aa3.16□□□□□ -1.9
SCN1A-219ENST00000641575 TOM1L2Q6ZVM7 507 aa3.16□□□□□ -1.9
SCN1A-219ENST00000641575 RNF214Q8ND24 703 aa3.16□□□□□ -1.9
SCN1A-219ENST00000641575 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP3.16□□□□□ -1.9
SCN1A-219ENST00000641575 NUP214P35658 2090 aaPredicted RBP3.16□□□□□ -1.9
SCN1A-219ENST00000641575 DYNC1I1O14576 645 aa3.16□□□□□ -1.9
SCN1A-219ENST00000641575 SLC4A2P04920 1241 aa3.16□□□□□ -1.9
SCN1A-219ENST00000641575 EVCP57679 992 aa3.16□□□□□ -1.9
SCN1A-219ENST00000641575 G3BP1Q13283 466 aaKnown RBP eCLIP3.16□□□□□ -1.9
SCN1A-219ENST00000641575 NFKBIBQ15653 356 aa3.16□□□□□ -1.9
SCN1A-219ENST00000641575 KCNH5Q8NCM2 988 aa3.16□□□□□ -1.9
SCN1A-219ENST00000641575 BANK1Q8NDB2 785 aa3.16□□□□□ -1.9
SCN1A-219ENST00000641575 KIF2CQ99661 725 aa3.16□□□□□ -1.9
SCN1A-219ENST00000641575 PYM1Q9BRP8 204 aaKnown RBP3.16□□□□□ -1.9
SCN1A-219ENST00000641575 NSRP1Q9H0G5 558 aaKnown RBP3.16□□□□□ -1.9
SCN1A-219ENST00000641575 POLE3Q9NRF9 147 aa3.16□□□□□ -1.9
SCN1A-219ENST00000641575 AKAP2Q9Y2D5 859 aa3.16□□□□□ -1.9
SCN1A-219ENST00000641575 FAN1Q9Y2M0 1017 aa3.16□□□□□ -1.9
SCN1A-219ENST00000641575 KIF21BO75037 1637 aa3.16□□□□□ -1.9
SCN1A-219ENST00000641575 USP47Q96K76 1375 aa3.16□□□□□ -1.9
SCN1A-219ENST00000641575 KIF15Q9NS87 1388 aa3.16□□□□□ -1.9
SCN1A-219ENST00000641575 MAP3K1Q13233 1512 aa3.16□□□□□ -1.9
SCN1A-219ENST00000641575 ESPNB1AK53 854 aa3.16□□□□□ -1.9
SCN1A-219ENST00000641575 RIC3Q7Z5B4 369 aa3.16□□□□□ -1.9
SCN1A-219ENST00000641575 SMC1BQ8NDV3 1235 aa3.16□□□□□ -1.9
SCN1A-219ENST00000641575 IFT81Q8WYA0 676 aa3.16□□□□□ -1.9
SCN1A-219ENST00000641575 NUP85Q9BW27 656 aa3.16□□□□□ -1.9
SCN1A-219ENST00000641575 NOL7Q9UMY1 257 aaKnown RBP3.16□□□□□ -1.9
SCN1A-219ENST00000641575 CADP27708 2225 aa3.16□□□□□ -1.9
SCN1A-219ENST00000641575 BIN1O00499 593 aa3.16□□□□□ -1.9
SCN1A-219ENST00000641575 CTNNA2P26232 953 aa3.16□□□□□ -1.9
SCN1A-219ENST00000641575 CALML3P27482 149 aa3.16□□□□□ -1.9
SCN1A-219ENST00000641575 MAP7Q14244 749 aa3.16□□□□□ -1.9
SCN1A-219ENST00000641575 KLHL10Q6JEL2 608 aa3.16□□□□□ -1.9
SCN1A-219ENST00000641575 CCDC84Q86UT8 332 aaPredicted RBP3.16□□□□□ -1.9
SCN1A-219ENST00000641575 KIF1BPQ96EK5 621 aa3.16□□□□□ -1.9
SCN1A-219ENST00000641575 NINLQ9Y2I6 1382 aa3.16□□□□□ -1.9
SCN1A-219ENST00000641575 DOCK11Q5JSL3 2073 aa3.16□□□□□ -1.9
SCN1A-219ENST00000641575 A0A1B0GUA9 196 aa3.16□□□□□ -1.9
SCN1A-219ENST00000641575 H3BUI4 141 aa3.16□□□□□ -1.9
SCN1A-219ENST00000641575 KIF5AQ12840 1032 aa3.16□□□□□ -1.9
SCN1A-219ENST00000641575 MYO7BQ6PIF6 2116 aa3.16□□□□□ -1.9
SCN1A-219ENST00000641575 KRT222Q8N1A0 295 aa3.16□□□□□ -1.9
SCN1A-219ENST00000641575 EFHBQ8N7U6 833 aa3.16□□□□□ -1.9
SCN1A-219ENST00000641575 WASF1Q92558 559 aa3.16□□□□□ -1.9
SCN1A-219ENST00000641575 CLUAP1Q96AJ1 413 aa3.16□□□□□ -1.9
SCN1A-219ENST00000641575 HYPKQ9NX55 129 aa3.16□□□□□ -1.9
SCN1A-219ENST00000641575 VPS37CA5D8V6 355 aaPredicted RBP3.16□□□□□ -1.9
SCN1A-219ENST00000641575 CHMP2AO43633 222 aa3.16□□□□□ -1.9
SCN1A-219ENST00000641575 PSMA4P25789 261 aaKnown RBP3.16□□□□□ -1.9
SCN1A-219ENST00000641575 KIF5BP33176 963 aa3.16□□□□□ -1.9
SCN1A-219ENST00000641575 PREPLQ4J6C6 727 aaPredicted RBP3.16□□□□□ -1.9
SCN1A-219ENST00000641575 MCTP2Q6DN12 878 aa3.16□□□□□ -1.9
SCN1A-219ENST00000641575 ZC4H2Q9NQZ6 224 aa3.16□□□□□ -1.9
SCN1A-219ENST00000641575 KIF27Q86VH2 1401 aa3.16□□□□□ -1.9
SCN1A-219ENST00000641575 ZNF853P0CG23 659 aa3.16□□□□□ -1.9
SCN1A-219ENST00000641575 IFNA8P32881 189 aa3.16□□□□□ -1.9
SCN1A-219ENST00000641575 ARL13BQ3SXY8 428 aa3.16□□□□□ -1.9
SCN1A-219ENST00000641575 ADALQ6DHV7 355 aa3.16□□□□□ -1.9
SCN1A-219ENST00000641575 LRRC43Q8N309 656 aa3.16□□□□□ -1.9
SCN1A-219ENST00000641575 TRIM35Q9UPQ4 493 aa3.16□□□□□ -1.9
SCN1A-219ENST00000641575 CACNA1HO95180 2353 aa3.16□□□□□ -1.9
SCN1A-219ENST00000641575 CCDC192P0DO97 292 aa3.16□□□□□ -1.9
SCN1A-219ENST00000641575 AMPD3Q01432 767 aa3.16□□□□□ -1.9
SCN1A-219ENST00000641575 PDE3AQ14432 1141 aa3.16□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms