RNA–Protein interactions for RNA: ENST00000637686.1

CLN3-261, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 533 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-261ENST00000637686 RNF181Q9P0P0 153 aa12.49□□□□□ -0.41
CLN3-261ENST00000637686 NOB1Q9ULX3 412 aaKnown RBP12.49□□□□□ -0.41
CLN3-261ENST00000637686 ALDH1L1O75891 902 aa12.48□□□□□ -0.41
CLN3-261ENST00000637686 BBOX1O75936 387 aa12.48□□□□□ -0.41
CLN3-261ENST00000637686 LMNB1P20700 586 aa12.48□□□□□ -0.41
CLN3-261ENST00000637686 CASP7P55210 303 aa12.48□□□□□ -0.41
CLN3-261ENST00000637686 RTKN2Q8IZC4 609 aa12.48□□□□□ -0.41
CLN3-261ENST00000637686 SRCIN1Q9C0H9 1055 aa12.48□□□□□ -0.41
CLN3-261ENST00000637686 FER1L6Q2WGJ9 1857 aa12.48□□□□□ -0.41
CLN3-261ENST00000637686 SBF1O95248 1867 aa12.47□□□□□ -0.41
CLN3-261ENST00000637686 TAF1P21675 1872 aa12.47□□□□□ -0.41
CLN3-261ENST00000637686 BCAR3O75815 825 aa12.47□□□□□ -0.41
CLN3-261ENST00000637686 CTSWP56202 376 aa12.47□□□□□ -0.41
CLN3-261ENST00000637686 FKBP4Q02790 459 aaKnown RBP eCLIP12.47□□□□□ -0.41
CLN3-261ENST00000637686 CCDC152Q4G0S7 254 aa12.47□□□□□ -0.41
CLN3-261ENST00000637686 CC2D2BQ6DHV5 1058 aa12.47□□□□□ -0.41
CLN3-261ENST00000637686 ZNF784Q8NCA9 323 aaPredicted RBP12.47□□□□□ -0.41
CLN3-261ENST00000637686 CELF1Q92879 486 aaKnown RBP12.47□□□□□ -0.41
CLN3-261ENST00000637686 SEC31BQ9NQW1 1179 aa12.47□□□□□ -0.41
CLN3-261ENST00000637686 ATP6V0A2Q9Y487 856 aa12.47□□□□□ -0.41
CLN3-261ENST00000637686 LTBP3Q9NS15 1303 aa12.46□□□□□ -0.41
CLN3-261ENST00000637686 GRM8O00222 908 aa12.46□□□□□ -0.41
CLN3-261ENST00000637686 SP8Q8IXZ3 490 aa12.46□□□□□ -0.41
CLN3-261ENST00000637686 GOLGA6L2Q8N9W4 650 aaPredicted RBP12.46□□□□□ -0.41
CLN3-261ENST00000637686 TTLL11Q8NHH1 800 aa12.46□□□□□ -0.41
CLN3-261ENST00000637686 PLA2G12BQ9BX93 195 aa12.46□□□□□ -0.41
CLN3-261ENST00000637686 TMX4Q9H1E5 349 aaPredicted RBP12.46□□□□□ -0.41
CLN3-261ENST00000637686 ZNF277Q9NRM2 450 aaPredicted RBP12.46□□□□□ -0.41
CLN3-261ENST00000637686 C9orf78Q9NZ63 289 aaPredicted RBP12.46□□□□□ -0.41
CLN3-261ENST00000637686 CCDC88AQ3V6T2 1871 aa12.45□□□□□ -0.42
CLN3-261ENST00000637686 RPS8P62241 208 aaKnown RBP12.45□□□□□ -0.42
CLN3-261ENST00000637686 ZNF526Q8TF50 670 aaPredicted RBP12.45□□□□□ -0.42
CLN3-261ENST00000637686 API5Q9BZZ5 524 aaKnown RBP12.45□□□□□ -0.42
CLN3-261ENST00000637686 GREM2Q9H772 168 aa12.45□□□□□ -0.42
CLN3-261ENST00000637686 SNED1Q8TER0 1413 aa12.45□□□□□ -0.42
CLN3-261ENST00000637686 COL4A1P02462 1669 aa12.45□□□□□ -0.42
CLN3-261ENST00000637686 FOXO4P98177 505 aa12.44□□□□□ -0.42
CLN3-261ENST00000637686 GRIPAP1Q4V328 841 aa12.44□□□□□ -0.42
CLN3-261ENST00000637686 TMC4Q7Z404 712 aa12.44□□□□□ -0.42
CLN3-261ENST00000637686 PSMD1Q99460 953 aa12.44□□□□□ -0.42
CLN3-261ENST00000637686 KIF16BQ96L93 1317 aa12.43□□□□□ -0.42
CLN3-261ENST00000637686 MYH3P11055 1940 aa12.43□□□□□ -0.42
CLN3-261ENST00000637686 CSF1RP07333 972 aa12.43□□□□□ -0.42
CLN3-261ENST00000637686 NBPF7P0C2Y1 421 aaPredicted RBP12.43□□□□□ -0.42
CLN3-261ENST00000637686 IARSP41252 1262 aaKnown RBP12.43□□□□□ -0.42
CLN3-261ENST00000637686 RRP1P56182 461 aaKnown RBP12.43□□□□□ -0.42
CLN3-261ENST00000637686 ERICH6BQ5W0A0 696 aa12.43□□□□□ -0.42
CLN3-261ENST00000637686 MPNDQ8N594 471 aa12.43□□□□□ -0.42
CLN3-261ENST00000637686 ARHGAP45Q92619 1136 aa12.43□□□□□ -0.42
CLN3-261ENST00000637686 FRAT1Q92837 279 aaPredicted RBP12.43□□□□□ -0.42
CLN3-261ENST00000637686 SUCLG2Q96I99 432 aa12.43□□□□□ -0.42
CLN3-261ENST00000637686 UTYO14607 1347 aa12.42□□□□□ -0.42
CLN3-261ENST00000637686 IPO8O15397 1037 aaKnown RBP12.42□□□□□ -0.42
CLN3-261ENST00000637686 MS4A1P11836 297 aa12.42□□□□□ -0.42
CLN3-261ENST00000637686 ITGA6P23229 1130 aa12.42□□□□□ -0.42
CLN3-261ENST00000637686 CCT4P50991 539 aaKnown RBP12.42□□□□□ -0.42
CLN3-261ENST00000637686 FAM161AQ3B820 660 aa12.42□□□□□ -0.42
CLN3-261ENST00000637686 EPHA10Q5JZY3 1008 aa12.42□□□□□ -0.42
CLN3-261ENST00000637686 DPP8Q6V1X1 898 aaPredicted RBP12.42□□□□□ -0.42
CLN3-261ENST00000637686 ANKRD18AQ8IVF6 992 aa12.42□□□□□ -0.42
CLN3-261ENST00000637686 CDC5LQ99459 802 aaKnown RBP12.42□□□□□ -0.42
CLN3-261ENST00000637686 USP44Q9H0E7 712 aa12.42□□□□□ -0.42
CLN3-261ENST00000637686 SUPT16HQ9Y5B9 1047 aaKnown RBP12.42□□□□□ -0.42
CLN3-261ENST00000637686 RTL9Q8NET4 1388 aa12.42□□□□□ -0.42
CLN3-261ENST00000637686 TRIM27P14373 513 aa12.41□□□□□ -0.42
CLN3-261ENST00000637686 GPSM2P81274 684 aa12.41□□□□□ -0.42
CLN3-261ENST00000637686 LMBR1LQ6UX01 489 aa12.41□□□□□ -0.42
CLN3-261ENST00000637686 ATF7IPQ6VMQ6 1270 aa12.41□□□□□ -0.42
CLN3-261ENST00000637686 KAZALD1Q96I82 304 aa12.41□□□□□ -0.42
CLN3-261ENST00000637686 RTFDC1Q9BY42 306 aaPredicted RBP12.41□□□□□ -0.42
CLN3-261ENST00000637686 GPBP1L1Q9HC44 474 aaPredicted RBP12.41□□□□□ -0.42
CLN3-261ENST00000637686 NSFL1CQ9UNZ2 370 aaKnown RBP12.41□□□□□ -0.42
CLN3-261ENST00000637686 TNNQ9UQP3 1299 aa12.41□□□□□ -0.42
CLN3-261ENST00000637686 CHMP3Q9Y3E7 222 aa12.41□□□□□ -0.42
CLN3-261ENST00000637686 DICER1Q9UPY3 1922 aaKnown RBP12.41□□□□□ -0.42
CLN3-261ENST00000637686 ZC3H4Q9UPT8 1303 aaKnown RBP12.4□□□□□ -0.42
CLN3-261ENST00000637686 IGHMBP2P38935 993 aaKnown RBP12.4□□□□□ -0.42
CLN3-261ENST00000637686 PDE3AQ14432 1141 aa12.4□□□□□ -0.42
CLN3-261ENST00000637686 SUPT20HQ8NEM7 779 aa12.4□□□□□ -0.42
CLN3-261ENST00000637686 CLUAP1Q96AJ1 413 aa12.4□□□□□ -0.42
CLN3-261ENST00000637686 TIAM2Q8IVF5 1701 aa12.4□□□□□ -0.43
CLN3-261ENST00000637686 ANKRD18BA2A2Z9 1011 aa12.39□□□□□ -0.43
CLN3-261ENST00000637686 GLTPD2A6NH11 291 aa12.39□□□□□ -0.43
CLN3-261ENST00000637686 PPIP5K2O43314 1243 aa12.39□□□□□ -0.43
CLN3-261ENST00000637686 NEFLP07196 543 aa12.39□□□□□ -0.43
CLN3-261ENST00000637686 IFIT5Q13325 482 aaKnown RBP12.39□□□□□ -0.43
CLN3-261ENST00000637686 AOC3Q16853 763 aa12.39□□□□□ -0.43
CLN3-261ENST00000637686 ZKSCAN2Q63HK3 967 aa12.39□□□□□ -0.43
CLN3-261ENST00000637686 LARGE2Q8N3Y3 721 aa12.39□□□□□ -0.43
CLN3-261ENST00000637686 BICC1Q9H694 974 aaKnown RBP12.39□□□□□ -0.43
CLN3-261ENST00000637686 BSDC1Q9NW68 430 aaPredicted RBP12.39□□□□□ -0.43
CLN3-261ENST00000637686 POLLQ9UGP5 575 aa12.39□□□□□ -0.43
CLN3-261ENST00000637686 LRRC37AA6NMS7 1700 aa12.39□□□□□ -0.43
CLN3-261ENST00000637686 KDM2BQ8NHM5 1336 aa12.38□□□□□ -0.43
CLN3-261ENST00000637686 C6orf229H3BNL8 230 aa12.38□□□□□ -0.43
CLN3-261ENST00000637686 CCDC57Q2TAC2 916 aa12.38□□□□□ -0.43
CLN3-261ENST00000637686 INTS3Q68E01 1043 aaKnown RBP12.38□□□□□ -0.43
CLN3-261ENST00000637686 DPY19L2Q6NUT2 758 aa12.38□□□□□ -0.43
CLN3-261ENST00000637686 JDP2Q8WYK2 163 aa12.38□□□□□ -0.43
CLN3-261ENST00000637686 MPHOSPH8Q99549 860 aa12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms