RNA–Protein interactions for RNA: ENST00000637551.2

CLN3-259, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,083 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-259ENST00000637551 RTL9Q8NET4 1388 aa23.21■■□□□ 1.31
CLN3-259ENST00000637551 LRRC37AA6NMS7 1700 aa23.21■■□□□ 1.31
CLN3-259ENST00000637551 SNED1Q8TER0 1413 aa23.2■■□□□ 1.3
CLN3-259ENST00000637551 H7C1W4 665 aa23.2■■□□□ 1.3
CLN3-259ENST00000637551 PDE8AO60658 829 aa23.2■■□□□ 1.3
CLN3-259ENST00000637551 BBOX1O75936 387 aa23.2■■□□□ 1.3
CLN3-259ENST00000637551 RARSP54136 660 aaKnown RBP23.2■■□□□ 1.3
CLN3-259ENST00000637551 CCDC93Q567U6 631 aa23.2■■□□□ 1.3
CLN3-259ENST00000637551 RTKN2Q8IZC4 609 aa23.2■■□□□ 1.3
CLN3-259ENST00000637551 HCLS1P14317 486 aaPredicted RBP23.19■■□□□ 1.3
CLN3-259ENST00000637551 HTRA3P83110 453 aa23.19■■□□□ 1.3
CLN3-259ENST00000637551 ARHGAP27Q6ZUM4 889 aa23.19■■□□□ 1.3
CLN3-259ENST00000637551 DDX46Q7L014 1031 aaKnown RBP23.19■■□□□ 1.3
CLN3-259ENST00000637551 TNS4Q8IZW8 715 aa23.18■■□□□ 1.3
CLN3-259ENST00000637551 GRAPQ13588 217 aa23.17■■□□□ 1.3
CLN3-259ENST00000637551 CWF19L2Q2TBE0 894 aaKnown RBP23.17■■□□□ 1.3
CLN3-259ENST00000637551 CCDC152Q4G0S7 254 aa23.17■■□□□ 1.3
CLN3-259ENST00000637551 C3orf67Q6ZVT6 689 aa23.17■■□□□ 1.3
CLN3-259ENST00000637551 GRAPLQ8TC17 118 aaPredicted RBP23.17■■□□□ 1.3
CLN3-259ENST00000637551 SRCIN1Q9C0H9 1055 aa23.17■■□□□ 1.3
CLN3-259ENST00000637551 ABCC4O15439 1325 aa23.16■■□□□ 1.3
CLN3-259ENST00000637551 C21orf2O43822 256 aa23.16■■□□□ 1.3
CLN3-259ENST00000637551 LMNB1P20700 586 aa23.16■■□□□ 1.3
CLN3-259ENST00000637551 SYNE4Q8N205 404 aa23.16■■□□□ 1.3
CLN3-259ENST00000637551 PSMD1Q99460 953 aa23.16■■□□□ 1.3
CLN3-259ENST00000637551 API5Q9BZZ5 524 aaKnown RBP23.16■■□□□ 1.3
CLN3-259ENST00000637551 TMX4Q9H1E5 349 aaPredicted RBP23.16■■□□□ 1.3
CLN3-259ENST00000637551 TAOK3Q9H2K8 898 aa23.16■■□□□ 1.3
CLN3-259ENST00000637551 UTYO14607 1347 aa23.15■■□□□ 1.3
CLN3-259ENST00000637551 NFKBIEO00221 500 aa23.15■■□□□ 1.3
CLN3-259ENST00000637551 CASP7P55210 303 aa23.15■■□□□ 1.3
CLN3-259ENST00000637551 VPS33BQ9H267 617 aa23.15■■□□□ 1.3
CLN3-259ENST00000637551 ATP6V0A2Q9Y487 856 aa23.15■■□□□ 1.3
CLN3-259ENST00000637551 CCDC88AQ3V6T2 1871 aa23.15■■□□□ 1.3
CLN3-259ENST00000637551 F6X3S4 739 aa23.14■■□□□ 1.29
CLN3-259ENST00000637551 PPEF1O14829 653 aaPredicted RBP23.14■■□□□ 1.29
CLN3-259ENST00000637551 IPO8O15397 1037 aaKnown RBP23.14■■□□□ 1.29
CLN3-259ENST00000637551 CTSWP56202 376 aa23.14■■□□□ 1.29
CLN3-259ENST00000637551 FSTL1Q12841 308 aa23.14■■□□□ 1.29
CLN3-259ENST00000637551 GRM8O00222 908 aa23.13■■□□□ 1.29
CLN3-259ENST00000637551 FKBP4Q02790 459 aaKnown RBP eCLIP23.13■■□□□ 1.29
CLN3-259ENST00000637551 UBE3BQ7Z3V4 1068 aa23.13■■□□□ 1.29
CLN3-259ENST00000637551 SP8Q8IXZ3 490 aa23.13■■□□□ 1.29
CLN3-259ENST00000637551 CCT4P50991 539 aaKnown RBP23.12■■□□□ 1.29
CLN3-259ENST00000637551 TIAM2Q8IVF5 1701 aa23.12■■□□□ 1.29
CLN3-259ENST00000637551 C16orf71Q8IYS4 520 aaPredicted RBP23.11■■□□□ 1.29
CLN3-259ENST00000637551 TTLL11Q8NHH1 800 aa23.1■■□□□ 1.29
CLN3-259ENST00000637551 CDC5LQ99459 802 aaKnown RBP23.1■■□□□ 1.29
CLN3-259ENST00000637551 BCL2L13Q9BXK5 485 aa23.1■■□□□ 1.29
CLN3-259ENST00000637551 LTBP1Q14766 1721 aa23.09■■□□□ 1.29
CLN3-259ENST00000637551 CSF1RP07333 972 aa23.09■■□□□ 1.29
CLN3-259ENST00000637551 C9orf131Q5VYM1 1079 aa23.09■■□□□ 1.29
CLN3-259ENST00000637551 SLC4A10Q6U841 1118 aa23.09■■□□□ 1.29
CLN3-259ENST00000637551 SUPT20HQ8NEM7 779 aa23.09■■□□□ 1.29
CLN3-259ENST00000637551 RTFDC1Q9BY42 306 aaPredicted RBP23.09■■□□□ 1.29
CLN3-259ENST00000637551 C9orf78Q9NZ63 289 aaPredicted RBP23.09■■□□□ 1.29
CLN3-259ENST00000637551 HDAC5Q9UQL6 1122 aa23.09■■□□□ 1.29
CLN3-259ENST00000637551 RPS8P62241 208 aaKnown RBP23.08■■□□□ 1.29
CLN3-259ENST00000637551 RTL5Q5HYW3 569 aaPredicted RBP23.08■■□□□ 1.29
CLN3-259ENST00000637551 TAF1P21675 1872 aa23.08■■□□□ 1.29
CLN3-259ENST00000637551 RNF181Q9P0P0 153 aa23.07■■□□□ 1.28
CLN3-259ENST00000637551 NOB1Q9ULX3 412 aaKnown RBP23.07■■□□□ 1.28
CLN3-259ENST00000637551 RASSF7Q02833 373 aa23.05■■□□□ 1.28
CLN3-259ENST00000637551 INTS3Q68E01 1043 aaKnown RBP23.05■■□□□ 1.28
CLN3-259ENST00000637551 ATF7IPQ6VMQ6 1270 aa23.05■■□□□ 1.28
CLN3-259ENST00000637551 ANKRD18AQ8IVF6 992 aa23.04■■□□□ 1.28
CLN3-259ENST00000637551 CELF1Q92879 486 aaKnown RBP23.04■■□□□ 1.28
CLN3-259ENST00000637551 PODXL2Q9NZ53 605 aa23.04■■□□□ 1.28
CLN3-259ENST00000637551 KDM2BQ8NHM5 1336 aa23.04■■□□□ 1.28
CLN3-259ENST00000637551 BSDC1Q9NW68 430 aaPredicted RBP23.03■■□□□ 1.28
CLN3-259ENST00000637551 DUOX1Q9NRD9 1551 aa23.02■■□□□ 1.28
CLN3-259ENST00000637551 IARSP41252 1262 aaKnown RBP23.02■■□□□ 1.28
CLN3-259ENST00000637551 FOXO4P98177 505 aa23.02■■□□□ 1.28
CLN3-259ENST00000637551 RABL6Q3YEC7 729 aaPredicted RBP23.02■■□□□ 1.28
CLN3-259ENST00000637551 ZKSCAN2Q63HK3 967 aa23.02■■□□□ 1.28
CLN3-259ENST00000637551 MPNDQ8N594 471 aa23.02■■□□□ 1.28
CLN3-259ENST00000637551 ZNF219Q9P2Y4 722 aaPredicted RBP23.02■■□□□ 1.28
CLN3-259ENST00000637551 TRIM27P14373 513 aa23.01■■□□□ 1.27
CLN3-259ENST00000637551 DPP8Q6V1X1 898 aaPredicted RBP23.01■■□□□ 1.27
CLN3-259ENST00000637551 USP44Q9H0E7 712 aa23.01■■□□□ 1.27
CLN3-259ENST00000637551 GREM2Q9H772 168 aa23.01■■□□□ 1.27
CLN3-259ENST00000637551 RRAGCQ9HB90 399 aa23.01■■□□□ 1.27
CLN3-259ENST00000637551 SEC31BQ9NQW1 1179 aa23■■□□□ 1.27
CLN3-259ENST00000637551 COL4A1P02462 1669 aa23■■□□□ 1.27
CLN3-259ENST00000637551 NBPF7P0C2Y1 421 aaPredicted RBP22.99■■□□□ 1.27
CLN3-259ENST00000637551 MS4A1P11836 297 aa22.99■■□□□ 1.27
CLN3-259ENST00000637551 ITGA6P23229 1130 aa22.99■■□□□ 1.27
CLN3-259ENST00000637551 IGHMBP2P38935 993 aaKnown RBP22.99■■□□□ 1.27
CLN3-259ENST00000637551 SMC1BQ8NDV3 1235 aa22.99■■□□□ 1.27
CLN3-259ENST00000637551 JARID2Q92833 1246 aaPredicted RBP22.99■■□□□ 1.27
CLN3-259ENST00000637551 ANKRD18BA2A2Z9 1011 aa22.98■■□□□ 1.27
CLN3-259ENST00000637551 BCAR3O75815 825 aa22.98■■□□□ 1.27
CLN3-259ENST00000637551 HSPA1AP0DMV8 641 aaKnown RBP22.98■■□□□ 1.27
CLN3-259ENST00000637551 HSPA1BP0DMV9 641 aaKnown RBP22.98■■□□□ 1.27
CLN3-259ENST00000637551 IFIT5Q13325 482 aaKnown RBP22.98■■□□□ 1.27
CLN3-259ENST00000637551 DPY19L2Q6NUT2 758 aa22.98■■□□□ 1.27
CLN3-259ENST00000637551 OLFM4Q6UX06 510 aa22.98■■□□□ 1.27
CLN3-259ENST00000637551 JDP2Q8WYK2 163 aa22.98■■□□□ 1.27
CLN3-259ENST00000637551 XDHP47989 1333 aa22.98■■□□□ 1.27
CLN3-259ENST00000637551 SPEF2Q9C093 1822 aa22.98■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms