RNA–Protein interactions for RNA: ENST00000617339.4

SHROOM1-208, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 3,638 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-208ENST00000617339 SPDYE4A6NLX3 237 aa17.27■□□□□ 0.35
SHROOM1-208ENST00000617339 RUFY2Q8WXA3 655 aa17.27■□□□□ 0.35
SHROOM1-208ENST00000617339 PDLIM2Q96JY6 352 aa17.27■□□□□ 0.35
SHROOM1-208ENST00000617339 DBNLQ9UJU6 430 aaKnown RBP17.27■□□□□ 0.35
SHROOM1-208ENST00000617339 MST1RQ04912 1400 aa17.26■□□□□ 0.35
SHROOM1-208ENST00000617339 ERC1Q8IUD2 1116 aa17.26■□□□□ 0.35
SHROOM1-208ENST00000617339 HELBQ8NG08 1087 aaPredicted RBP17.26■□□□□ 0.35
SHROOM1-208ENST00000617339 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP17.26■□□□□ 0.35
SHROOM1-208ENST00000617339 HSP90B1P14625 803 aaKnown RBP17.26■□□□□ 0.35
SHROOM1-208ENST00000617339 ZKSCAN1P17029 563 aaPredicted RBP17.26■□□□□ 0.35
SHROOM1-208ENST00000617339 HS1BP3Q53T59 392 aa17.26■□□□□ 0.35
SHROOM1-208ENST00000617339 RAB11FIP4Q86YS3 637 aa17.26■□□□□ 0.35
SHROOM1-208ENST00000617339 PDRG1Q9NUG6 133 aa17.26■□□□□ 0.35
SHROOM1-208ENST00000617339 HDAC5Q9UQL6 1122 aa17.26■□□□□ 0.35
SHROOM1-208ENST00000617339 KIAA2012Q0VF49 1180 aa17.26■□□□□ 0.35
SHROOM1-208ENST00000617339 FAM182BQ5T319 152 aa17.26■□□□□ 0.35
SHROOM1-208ENST00000617339 SMC3Q9UQE7 1217 aa17.26■□□□□ 0.35
SHROOM1-208ENST00000617339 CHD2O14647 1828 aaKnown RBP17.25■□□□□ 0.35
SHROOM1-208ENST00000617339 KDM4FA0A1W2PPD8 638 aa17.25■□□□□ 0.35
SHROOM1-208ENST00000617339 PTPN12Q05209 780 aaKnown RBP17.25■□□□□ 0.35
SHROOM1-208ENST00000617339 LRSAM1Q6UWE0 723 aa17.25■□□□□ 0.35
SHROOM1-208ENST00000617339 CCDC94Q9BW85 323 aaPredicted RBP17.25■□□□□ 0.35
SHROOM1-208ENST00000617339 LSG1Q9H089 658 aaKnown RBP17.25■□□□□ 0.35
SHROOM1-208ENST00000617339 SNAP23O00161 211 aa17.25■□□□□ 0.35
SHROOM1-208ENST00000617339 MTERF4Q7Z6M4 381 aaKnown RBP17.24■□□□□ 0.35
SHROOM1-208ENST00000617339 DDX11Q96FC9 970 aa17.24■□□□□ 0.35
SHROOM1-208ENST00000617339 BCL11BQ9C0K0 894 aaPredicted RBP17.24■□□□□ 0.35
SHROOM1-208ENST00000617339 HSPA4P34932 840 aa17.24■□□□□ 0.35
SHROOM1-208ENST00000617339 EVI5LQ96CN4 794 aa17.24■□□□□ 0.35
SHROOM1-208ENST00000617339 CWC25Q9NXE8 425 aaPredicted RBP17.24■□□□□ 0.35
SHROOM1-208ENST00000617339 GADD45BO75293 160 aaPredicted RBP17.23■□□□□ 0.35
SHROOM1-208ENST00000617339 WASHC4Q2M389 1173 aa17.23■□□□□ 0.35
SHROOM1-208ENST00000617339 PI16Q6UXB8 463 aa17.23■□□□□ 0.35
SHROOM1-208ENST00000617339 WDR17Q8IZU2 1322 aa17.23■□□□□ 0.35
SHROOM1-208ENST00000617339 HAND2P61296 217 aa17.23■□□□□ 0.35
SHROOM1-208ENST00000617339 CEBPZQ03701 1054 aaKnown RBP17.23■□□□□ 0.35
SHROOM1-208ENST00000617339 PIGBQ92521 554 aa17.23■□□□□ 0.35
SHROOM1-208ENST00000617339 TTC12Q9H892 705 aaPredicted RBP17.23■□□□□ 0.35
SHROOM1-208ENST00000617339 CYP46A1Q9Y6A2 500 aa17.23■□□□□ 0.35
SHROOM1-208ENST00000617339 TNNI3KQ59H18 835 aa17.22■□□□□ 0.35
SHROOM1-208ENST00000617339 PPP4R3BQ5MIZ7 849 aa17.22■□□□□ 0.35
SHROOM1-208ENST00000617339 RUFY3Q7L099 469 aa17.22■□□□□ 0.35
SHROOM1-208ENST00000617339 FPGT-TNNI3KV9GXZ4 949 aa17.22■□□□□ 0.35
SHROOM1-208ENST00000617339 CCDC57Q2TAC2 916 aa17.22■□□□□ 0.35
SHROOM1-208ENST00000617339 KIF6Q6ZMV9 814 aa17.22■□□□□ 0.35
SHROOM1-208ENST00000617339 PLBD2Q8NHP8 589 aa17.22■□□□□ 0.35
SHROOM1-208ENST00000617339 RAD50Q92878 1312 aa17.21■□□□□ 0.35
SHROOM1-208ENST00000617339 CNPY2Q9Y2B0 182 aa17.21■□□□□ 0.35
SHROOM1-208ENST00000617339 PCDH11XQ9BZA7 1347 aa17.21■□□□□ 0.35
SHROOM1-208ENST00000617339 PCDH11YQ9BZA8 1340 aa17.21■□□□□ 0.35
SHROOM1-208ENST00000617339 A0A0G2JLW4 131 aa17.21■□□□□ 0.35
SHROOM1-208ENST00000617339 CREB3L3Q68CJ9 461 aa17.21■□□□□ 0.35
SHROOM1-208ENST00000617339 HLFQ16534 295 aa17.2■□□□□ 0.34
SHROOM1-208ENST00000617339 CWC22Q9HCG8 908 aaKnown RBP17.2■□□□□ 0.34
SHROOM1-208ENST00000617339 TSPY26PQ9H489 355 aa17.2■□□□□ 0.34
SHROOM1-208ENST00000617339 USP25Q9UHP3 1055 aa17.2■□□□□ 0.34
SHROOM1-208ENST00000617339 DMTNQ08495 405 aa17.2■□□□□ 0.34
SHROOM1-208ENST00000617339 CCDC24Q8N4L8 307 aa17.2■□□□□ 0.34
SHROOM1-208ENST00000617339 TNS3Q68CZ2 1445 aa17.2■□□□□ 0.34
SHROOM1-208ENST00000617339 VPS53Q5VIR6 699 aa17.19■□□□□ 0.34
SHROOM1-208ENST00000617339 CLEC17AQ6ZS10 378 aa17.19■□□□□ 0.34
SHROOM1-208ENST00000617339 TFIP11Q9UBB9 837 aaKnown RBP17.19■□□□□ 0.34
SHROOM1-208ENST00000617339 GJB2P29033 226 aa17.19■□□□□ 0.34
SHROOM1-208ENST00000617339 LIMCH1Q9UPQ0 1083 aa17.19■□□□□ 0.34
SHROOM1-208ENST00000617339 RGPD5Q99666 1765 aa17.19■□□□□ 0.34
SHROOM1-208ENST00000617339 TTC41PQ6P2S7 1318 aa17.19■□□□□ 0.34
SHROOM1-208ENST00000617339 ZSCAN20P17040 1043 aaPredicted RBP17.19■□□□□ 0.34
SHROOM1-208ENST00000617339 IQSEC3Q9UPP2 1182 aaPredicted RBP17.19■□□□□ 0.34
SHROOM1-208ENST00000617339 CCDC171Q6TFL3 1326 aa17.18■□□□□ 0.34
SHROOM1-208ENST00000617339 ADORA1P30542 326 aa17.18■□□□□ 0.34
SHROOM1-208ENST00000617339 ATP2B3Q16720 1220 aa17.18■□□□□ 0.34
SHROOM1-208ENST00000617339 TOMM22Q9NS69 142 aa17.18■□□□□ 0.34
SHROOM1-208ENST00000617339 BLOC1S2Q6QNY1 142 aa17.18■□□□□ 0.34
SHROOM1-208ENST00000617339 CEP126Q9P2H0 1117 aa17.18■□□□□ 0.34
SHROOM1-208ENST00000617339 TRMT112Q9UI30 125 aaKnown RBP17.18■□□□□ 0.34
SHROOM1-208ENST00000617339 IFIT1P09914 478 aaKnown RBP17.17■□□□□ 0.34
SHROOM1-208ENST00000617339 CCT2P78371 535 aaKnown RBP17.17■□□□□ 0.34
SHROOM1-208ENST00000617339 ZNF710Q8N1W2 664 aa17.17■□□□□ 0.34
SHROOM1-208ENST00000617339 CNNM1Q9NRU3 951 aa17.17■□□□□ 0.34
SHROOM1-208ENST00000617339 HCLS1P14317 486 aaPredicted RBP17.17■□□□□ 0.34
SHROOM1-208ENST00000617339 MYRIPQ8NFW9 859 aa17.17■□□□□ 0.34
SHROOM1-208ENST00000617339 TOM1O60784 492 aa17.17■□□□□ 0.34
SHROOM1-208ENST00000617339 APPP05067 770 aa17.17■□□□□ 0.34
SHROOM1-208ENST00000617339 CYP2E1P05181 493 aaPredicted RBP17.17■□□□□ 0.34
SHROOM1-208ENST00000617339 SYT1P21579 422 aa17.17■□□□□ 0.34
SHROOM1-208ENST00000617339 GUCY1B3Q02153 619 aa17.17■□□□□ 0.34
SHROOM1-208ENST00000617339 MTX1Q13505 466 aa17.17■□□□□ 0.34
SHROOM1-208ENST00000617339 ME3Q16798 604 aa17.17■□□□□ 0.34
SHROOM1-208ENST00000617339 TTLL5Q6EMB2 1281 aa17.17■□□□□ 0.34
SHROOM1-208ENST00000617339 A0A1B0GUL7 405 aa17.16■□□□□ 0.34
SHROOM1-208ENST00000617339 SLC27A2O14975 620 aa17.16■□□□□ 0.34
SHROOM1-208ENST00000617339 STARD3NLO95772 234 aa17.16■□□□□ 0.34
SHROOM1-208ENST00000617339 MCM5P33992 734 aa17.16■□□□□ 0.34
SHROOM1-208ENST00000617339 DDB1Q16531 1140 aa17.16■□□□□ 0.34
SHROOM1-208ENST00000617339 USP48Q86UV5 1035 aa17.16■□□□□ 0.34
SHROOM1-208ENST00000617339 ZBTB1Q9Y2K1 713 aa17.16■□□□□ 0.34
SHROOM1-208ENST00000617339 MED1Q15648 1581 aaPredicted RBP17.16■□□□□ 0.34
SHROOM1-208ENST00000617339 FAM98CQ17RN3 349 aaKnown RBP17.16■□□□□ 0.34
SHROOM1-208ENST00000617339 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP17.16■□□□□ 0.34
SHROOM1-208ENST00000617339 TPCN1Q9ULQ1 816 aa17.16■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms