RNA–Protein interactions for RNA: ENST00000616383.1

MMP28-206, Transcript of matrix metallopeptidase 28, humanhuman

TSL 3

Gene MMP28, Length 696 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28-206ENST00000616383 PCDHB15Q9Y5E8 787 aa13.76□□□□□ -0.21
MMP28-206ENST00000616383 UTYO14607 1347 aa13.75□□□□□ -0.21
MMP28-206ENST00000616383 UBN2Q6ZU65 1347 aa13.75□□□□□ -0.21
MMP28-206ENST00000616383 RGL2O15211 777 aa13.75□□□□□ -0.21
MMP28-206ENST00000616383 ZPR1O75312 459 aa13.75□□□□□ -0.21
MMP28-206ENST00000616383 GNAI2P04899 355 aa13.75□□□□□ -0.21
MMP28-206ENST00000616383 RFC4P35249 363 aa13.75□□□□□ -0.21
MMP28-206ENST00000616383 TRIM28Q13263 835 aaKnown RBP13.75□□□□□ -0.21
MMP28-206ENST00000616383 USPL1Q5W0Q7 1092 aa13.75□□□□□ -0.21
MMP28-206ENST00000616383 ZNF34Q8IZ26 560 aa13.75□□□□□ -0.21
MMP28-206ENST00000616383 BCL2L12Q9HB09 334 aa13.75□□□□□ -0.21
MMP28-206ENST00000616383 ANO8Q9HCE9 1232 aaPredicted RBP13.75□□□□□ -0.21
MMP28-206ENST00000616383 TFCP2L1Q9NZI6 479 aa13.75□□□□□ -0.21
MMP28-206ENST00000616383 LRRFIP2Q9Y608 721 aaKnown RBP13.75□□□□□ -0.21
MMP28-206ENST00000616383 UBE3BQ7Z3V4 1068 aa13.74□□□□□ -0.21
MMP28-206ENST00000616383 NLRP10Q86W26 655 aa13.74□□□□□ -0.21
MMP28-206ENST00000616383 CDAN1Q8IWY9 1227 aa13.74□□□□□ -0.21
MMP28-206ENST00000616383 CLEC4GQ6UXB4 293 aa13.73□□□□□ -0.21
MMP28-206ENST00000616383 JARID2Q92833 1246 aaPredicted RBP13.73□□□□□ -0.21
MMP28-206ENST00000616383 STK32BQ9NY57 414 aa13.73□□□□□ -0.21
MMP28-206ENST00000616383 NIP7Q9Y221 180 aaKnown RBP eCLIP13.73□□□□□ -0.21
MMP28-206ENST00000616383 PNPLA7Q6ZV29 1317 aa13.72□□□□□ -0.21
MMP28-206ENST00000616383 H7C1W4 665 aa13.72□□□□□ -0.21
MMP28-206ENST00000616383 CASP7P55210 303 aa13.72□□□□□ -0.21
MMP28-206ENST00000616383 CEP85Q6P2H3 762 aa13.72□□□□□ -0.21
MMP28-206ENST00000616383 SUCLG2Q96I99 432 aa13.72□□□□□ -0.21
MMP28-206ENST00000616383 PCCAP05165 728 aaPredicted RBP13.71□□□□□ -0.21
MMP28-206ENST00000616383 SLC15A2Q16348 729 aa13.71□□□□□ -0.21
MMP28-206ENST00000616383 PARP10Q53GL7 1025 aa13.71□□□□□ -0.21
MMP28-206ENST00000616383 RTL5Q5HYW3 569 aaPredicted RBP13.71□□□□□ -0.21
MMP28-206ENST00000616383 TBC1D9BQ66K14 1250 aa13.71□□□□□ -0.21
MMP28-206ENST00000616383 COL23A1Q86Y22 540 aaPredicted RBP13.71□□□□□ -0.21
MMP28-206ENST00000616383 ANKRD44Q8N8A2 993 aa13.71□□□□□ -0.21
MMP28-206ENST00000616383 FLAD1Q8NFF5 587 aa13.71□□□□□ -0.21
MMP28-206ENST00000616383 HDAC5Q9UQL6 1122 aa13.71□□□□□ -0.21
MMP28-206ENST00000616383 KDM2BQ8NHM5 1336 aa13.7□□□□□ -0.22
MMP28-206ENST00000616383 SPEF2Q9C093 1822 aa13.7□□□□□ -0.22
MMP28-206ENST00000616383 PSDA5PKW4 1024 aaPredicted RBP13.7□□□□□ -0.22
MMP28-206ENST00000616383 IGHDP01880 384 aa13.7□□□□□ -0.22
MMP28-206ENST00000616383 GYS1P13807 737 aa13.7□□□□□ -0.22
MMP28-206ENST00000616383 YY1P25490 414 aa13.7□□□□□ -0.22
MMP28-206ENST00000616383 HDAC1Q13547 482 aaPredicted RBP13.7□□□□□ -0.22
MMP28-206ENST00000616383 BICDL1Q6ZP65 573 aa13.7□□□□□ -0.22
MMP28-206ENST00000616383 SIRT2Q8IXJ6 389 aa13.7□□□□□ -0.22
MMP28-206ENST00000616383 RPAP2Q8IXW5 612 aaPredicted RBP13.7□□□□□ -0.22
MMP28-206ENST00000616383 KAZALD1Q96I82 304 aa13.7□□□□□ -0.22
MMP28-206ENST00000616383 TRMT112Q9UI30 125 aaKnown RBP13.7□□□□□ -0.22
MMP28-206ENST00000616383 FBXO3Q9UK99 471 aa13.7□□□□□ -0.22
MMP28-206ENST00000616383 NRXN2Q9P2S2 1712 aa13.7□□□□□ -0.22
MMP28-206ENST00000616383 TNRC6CQ9HCJ0 1690 aaKnown RBP13.69□□□□□ -0.22
MMP28-206ENST00000616383 CDHR2Q9BYE9 1310 aa13.69□□□□□ -0.22
MMP28-206ENST00000616383 FAM177BA6PVY3 158 aa13.69□□□□□ -0.22
MMP28-206ENST00000616383 NTSR2O95665 410 aa13.69□□□□□ -0.22
MMP28-206ENST00000616383 EPHA10Q5JZY3 1008 aa13.69□□□□□ -0.22
MMP28-206ENST00000616383 SUSD4Q5VX71 490 aa13.69□□□□□ -0.22
MMP28-206ENST00000616383 ZBTB38Q8NAP3 1195 aaPredicted RBP13.69□□□□□ -0.22
MMP28-206ENST00000616383 FAM89AQ96GI7 184 aa13.69□□□□□ -0.22
MMP28-206ENST00000616383 UTP14AQ9BVJ6 771 aaKnown RBP13.69□□□□□ -0.22
MMP28-206ENST00000616383 RWDD1Q9H446 243 aaPredicted RBP13.69□□□□□ -0.22
MMP28-206ENST00000616383 BICC1Q9H694 974 aaKnown RBP13.69□□□□□ -0.22
MMP28-206ENST00000616383 CARMIL3Q8ND23 1372 aa13.69□□□□□ -0.22
MMP28-206ENST00000616383 ST18O60284 1047 aa13.68□□□□□ -0.22
MMP28-206ENST00000616383 HMMRO75330 724 aa13.68□□□□□ -0.22
MMP28-206ENST00000616383 IRX5P78411 483 aaPredicted RBP13.68□□□□□ -0.22
MMP28-206ENST00000616383 CENPQQ7L2Z9 268 aaPredicted RBP13.68□□□□□ -0.22
MMP28-206ENST00000616383 PPP1R42Q7Z4L9 355 aa13.68□□□□□ -0.22
MMP28-206ENST00000616383 SYNE4Q8N205 404 aa13.68□□□□□ -0.22
MMP28-206ENST00000616383 KLHL34Q8N239 644 aa13.68□□□□□ -0.22
MMP28-206ENST00000616383 SETDB2Q96T68 719 aa13.68□□□□□ -0.22
MMP28-206ENST00000616383 OCEL1Q9H607 264 aa13.68□□□□□ -0.22
MMP28-206ENST00000616383 PCDHB8Q9UN66 801 aa13.68□□□□□ -0.22
MMP28-206ENST00000616383 SH3TC1Q8TE82 1336 aa13.67□□□□□ -0.22
MMP28-206ENST00000616383 PNMA6EA0A0J9YXQ4 647 aa13.67□□□□□ -0.22
MMP28-206ENST00000616383 ATP8B2P98198 1209 aa13.67□□□□□ -0.22
MMP28-206ENST00000616383 MTX1Q13505 466 aa13.67□□□□□ -0.22
MMP28-206ENST00000616383 NFIXQ14938 502 aa13.67□□□□□ -0.22
MMP28-206ENST00000616383 ANKRD31Q8N7Z5 1873 aa13.67□□□□□ -0.22
MMP28-206ENST00000616383 IRS4O14654 1257 aaPredicted RBP13.66□□□□□ -0.22
MMP28-206ENST00000616383 SRGAP3O43295 1099 aa13.66□□□□□ -0.22
MMP28-206ENST00000616383 FOXO4P98177 505 aa13.66□□□□□ -0.22
MMP28-206ENST00000616383 RABL6Q3YEC7 729 aaPredicted RBP13.66□□□□□ -0.22
MMP28-206ENST00000616383 NUTM1Q86Y26 1132 aa13.66□□□□□ -0.22
MMP28-206ENST00000616383 PLA2G12BQ9BX93 195 aa13.66□□□□□ -0.22
MMP28-206ENST00000616383 ABCC12Q96J65 1359 aa13.66□□□□□ -0.22
MMP28-206ENST00000616383 NBPF5PQ86XG9 351 aaPredicted RBP13.65□□□□□ -0.22
MMP28-206ENST00000616383 SSH3Q8TE77 659 aa13.65□□□□□ -0.22
MMP28-206ENST00000616383 NYXQ9GZU5 481 aa13.65□□□□□ -0.22
MMP28-206ENST00000616383 TAF1P21675 1872 aa13.65□□□□□ -0.22
MMP28-206ENST00000616383 LRP5O75197 1615 aa13.64□□□□□ -0.23
MMP28-206ENST00000616383 HCLS1P14317 486 aaPredicted RBP13.64□□□□□ -0.23
MMP28-206ENST00000616383 TM4SF1P30408 202 aa13.64□□□□□ -0.23
MMP28-206ENST00000616383 DDR1Q08345 913 aa13.64□□□□□ -0.23
MMP28-206ENST00000616383 ERFEQ4G0M1 354 aa13.64□□□□□ -0.23
MMP28-206ENST00000616383 LMBR1LQ6UX01 489 aa13.64□□□□□ -0.23
MMP28-206ENST00000616383 SMC5Q8IY18 1101 aa13.64□□□□□ -0.23
MMP28-206ENST00000616383 NLGN1Q8N2Q7 840 aa13.64□□□□□ -0.23
MMP28-206ENST00000616383 A0A1B0GUL6 1792 aa13.63□□□□□ -0.23
MMP28-206ENST00000616383 PDE8AO60658 829 aa13.63□□□□□ -0.23
MMP28-206ENST00000616383 GTF2E1P29083 439 aaPredicted RBP13.63□□□□□ -0.23
MMP28-206ENST00000616383 CTSWP56202 376 aa13.63□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms