RNA–Protein interactions for RNA: ENST00000600289.6

LSM4-206, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 1,113 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-206ENST00000600289 VEGFBP49765 207 aa20.7■□□□□ 0.9
LSM4-206ENST00000600289 PI4KAP1Q8N8J0 262 aa20.7■□□□□ 0.9
LSM4-206ENST00000600289 ZNF428Q96B54 188 aa20.7■□□□□ 0.9
LSM4-206ENST00000600289 MYD88Q99836 296 aa20.7■□□□□ 0.9
LSM4-206ENST00000600289 LTBP3Q9NS15 1303 aa20.7■□□□□ 0.9
LSM4-206ENST00000600289 SNED1Q8TER0 1413 aa20.7■□□□□ 0.9
LSM4-206ENST00000600289 NFKBIEO00221 500 aa20.69■□□□□ 0.9
LSM4-206ENST00000600289 C3orf67Q6ZVT6 689 aa20.69■□□□□ 0.9
LSM4-206ENST00000600289 RPGRQ92834 1020 aaKnown RBP20.69■□□□□ 0.9
LSM4-206ENST00000600289 CRAMP1Q96RY5 1269 aa20.69■□□□□ 0.9
LSM4-206ENST00000600289 PASKQ96RG2 1323 aa20.69■□□□□ 0.9
LSM4-206ENST00000600289 TAF1P21675 1872 aa20.69■□□□□ 0.9
LSM4-206ENST00000600289 THSD7BQ9C0I4 1608 aa20.68■□□□□ 0.9
LSM4-206ENST00000600289 C21orf2O43822 256 aa20.68■□□□□ 0.9
LSM4-206ENST00000600289 ZBTB38Q8NAP3 1195 aaPredicted RBP20.68■□□□□ 0.9
LSM4-206ENST00000600289 CDCA7LQ96GN5 454 aa20.68■□□□□ 0.9
LSM4-206ENST00000600289 CWC25Q9NXE8 425 aaPredicted RBP20.68■□□□□ 0.9
LSM4-206ENST00000600289 SCN4AP35499 1836 aa20.67■□□□□ 0.9
LSM4-206ENST00000600289 NEXNQ0ZGT2 675 aa20.67■□□□□ 0.9
LSM4-206ENST00000600289 RBM17Q96I25 401 aaKnown RBP20.67■□□□□ 0.9
LSM4-206ENST00000600289 PCCAP05165 728 aaPredicted RBP20.66■□□□□ 0.9
LSM4-206ENST00000600289 IGKV5-2P06315 115 aa20.66■□□□□ 0.9
LSM4-206ENST00000600289 CT47B1P0C2W7 299 aaPredicted RBP20.66■□□□□ 0.9
LSM4-206ENST00000600289 HSP90B1P14625 803 aaKnown RBP20.66■□□□□ 0.9
LSM4-206ENST00000600289 FKBP5Q13451 457 aaPredicted RBP20.66■□□□□ 0.9
LSM4-206ENST00000600289 SYNE4Q8N205 404 aa20.66■□□□□ 0.9
LSM4-206ENST00000600289 FAM89AQ96GI7 184 aa20.66■□□□□ 0.9
LSM4-206ENST00000600289 ADAMTSL1Q8N6G6 1762 aa20.66■□□□□ 0.9
LSM4-206ENST00000600289 CDHR2Q9BYE9 1310 aa20.65■□□□□ 0.9
LSM4-206ENST00000600289 HCLS1P14317 486 aaPredicted RBP20.65■□□□□ 0.9
LSM4-206ENST00000600289 SF3B3Q15393 1217 aaKnown RBP20.65■□□□□ 0.9
LSM4-206ENST00000600289 CCDC93Q567U6 631 aa20.65■□□□□ 0.9
LSM4-206ENST00000600289 DNAAF4Q8WXU2 420 aa20.65■□□□□ 0.9
LSM4-206ENST00000600289 CC2D2BQ6DHV5 1058 aa20.64■□□□□ 0.89
LSM4-206ENST00000600289 PDE4DIPQ5VU43 2346 aa20.64■□□□□ 0.89
LSM4-206ENST00000600289 ABCC4O15439 1325 aa20.63■□□□□ 0.89
LSM4-206ENST00000600289 CCDC85CA6NKD9 419 aa20.63■□□□□ 0.89
LSM4-206ENST00000600289 NEURL1BA8MQ27 555 aa20.63■□□□□ 0.89
LSM4-206ENST00000600289 IRS4O14654 1257 aaPredicted RBP20.63■□□□□ 0.89
LSM4-206ENST00000600289 ALDH1L2Q3SY69 923 aa20.63■□□□□ 0.89
LSM4-206ENST00000600289 GRIPAP1Q4V328 841 aa20.63■□□□□ 0.89
LSM4-206ENST00000600289 LTBP1Q14766 1721 aa20.62■□□□□ 0.89
LSM4-206ENST00000600289 DPY19L2Q6NUT2 758 aa20.62■□□□□ 0.89
LSM4-206ENST00000600289 RTKN2Q8IZC4 609 aa20.62■□□□□ 0.89
LSM4-206ENST00000600289 MRPL50Q8N5N7 158 aaKnown RBP20.62■□□□□ 0.89
LSM4-206ENST00000600289 LINS1Q8NG48 757 aa20.62■□□□□ 0.89
LSM4-206ENST00000600289 TAOK3Q9H2K8 898 aa20.62■□□□□ 0.89
LSM4-206ENST00000600289 ZNF219Q9P2Y4 722 aaPredicted RBP20.62■□□□□ 0.89
LSM4-206ENST00000600289 PPEF1O14829 653 aaPredicted RBP20.61■□□□□ 0.89
LSM4-206ENST00000600289 COL4A1P02462 1669 aa20.61■□□□□ 0.89
LSM4-206ENST00000600289 PTPRCP08575 1304 aa20.6■□□□□ 0.89
LSM4-206ENST00000600289 BBOX1O75936 387 aa20.6■□□□□ 0.89
LSM4-206ENST00000600289 HNRNPUQ00839 825 aaKnown RBP eCLIP20.6■□□□□ 0.89
LSM4-206ENST00000600289 FKBP4Q02790 459 aaKnown RBP eCLIP20.6■□□□□ 0.89
LSM4-206ENST00000600289 GRAPQ13588 217 aa20.6■□□□□ 0.89
LSM4-206ENST00000600289 CWF19L2Q2TBE0 894 aaKnown RBP20.6■□□□□ 0.89
LSM4-206ENST00000600289 DDX46Q7L014 1031 aaKnown RBP20.6■□□□□ 0.89
LSM4-206ENST00000600289 TMC4Q7Z404 712 aa20.6■□□□□ 0.89
LSM4-206ENST00000600289 GRAPLQ8TC17 118 aaPredicted RBP20.6■□□□□ 0.89
LSM4-206ENST00000600289 SPEF2Q9C093 1822 aa20.6■□□□□ 0.89
LSM4-206ENST00000600289 TMEM88BA6NKF7 163 aa20.59■□□□□ 0.89
LSM4-206ENST00000600289 PDE8AO60658 829 aa20.59■□□□□ 0.89
LSM4-206ENST00000600289 GCKRQ14397 625 aa20.59■□□□□ 0.89
LSM4-206ENST00000600289 SSH1Q8WYL5 1049 aa20.59■□□□□ 0.89
LSM4-206ENST00000600289 PSMD1Q99460 953 aa20.59■□□□□ 0.89
LSM4-206ENST00000600289 ATP6V0A2Q9Y487 856 aa20.59■□□□□ 0.89
LSM4-206ENST00000600289 H7C1W4 665 aa20.58■□□□□ 0.89
LSM4-206ENST00000600289 BEND3Q5T5X7 828 aa20.58■□□□□ 0.89
LSM4-206ENST00000600289 RTL9Q8NET4 1388 aa20.58■□□□□ 0.88
LSM4-206ENST00000600289 ZBED9Q6R2W3 1325 aa20.57■□□□□ 0.88
LSM4-206ENST00000600289 ITGBL1O95965 494 aaPredicted RBP20.57■□□□□ 0.88
LSM4-206ENST00000600289 BRPF1P55201 1214 aaPredicted RBP20.57■□□□□ 0.88
LSM4-206ENST00000600289 RTL5Q5HYW3 569 aaPredicted RBP20.57■□□□□ 0.88
LSM4-206ENST00000600289 OLFM4Q6UX06 510 aa20.57■□□□□ 0.88
LSM4-206ENST00000600289 DUOX1Q9NRD9 1551 aa20.57■□□□□ 0.88
LSM4-206ENST00000600289 RASSF10A6NK89 507 aa20.56■□□□□ 0.88
LSM4-206ENST00000600289 F6X3S4 739 aa20.56■□□□□ 0.88
LSM4-206ENST00000600289 DDNO94850 711 aaPredicted RBP20.56■□□□□ 0.88
LSM4-206ENST00000600289 CASP7P55210 303 aa20.56■□□□□ 0.88
LSM4-206ENST00000600289 LDHDQ86WU2 507 aa20.56■□□□□ 0.88
LSM4-206ENST00000600289 SP8Q8IXZ3 490 aa20.56■□□□□ 0.88
LSM4-206ENST00000600289 PLA2G12BQ9BX93 195 aa20.56■□□□□ 0.88
LSM4-206ENST00000600289 CCDC152Q4G0S7 254 aa20.55■□□□□ 0.88
LSM4-206ENST00000600289 ALDH1L1O75891 902 aa20.54■□□□□ 0.88
LSM4-206ENST00000600289 A0A1B0GUL6 1792 aa20.54■□□□□ 0.88
LSM4-206ENST00000600289 CTSWP56202 376 aa20.53■□□□□ 0.88
LSM4-206ENST00000600289 UBE3BQ7Z3V4 1068 aa20.53■□□□□ 0.88
LSM4-206ENST00000600289 TMX4Q9H1E5 349 aaPredicted RBP20.53■□□□□ 0.88
LSM4-206ENST00000600289 SMC4Q9NTJ3 1288 aa20.53■□□□□ 0.88
LSM4-206ENST00000600289 MAP2K1Q02750 393 aaPredicted RBP20.52■□□□□ 0.88
LSM4-206ENST00000600289 JARID2Q92833 1246 aaPredicted RBP20.52■□□□□ 0.88
LSM4-206ENST00000600289 CELF1Q92879 486 aaKnown RBP20.52■□□□□ 0.88
LSM4-206ENST00000600289 RTFDC1Q9BY42 306 aaPredicted RBP20.52■□□□□ 0.88
LSM4-206ENST00000600289 VPS33BQ9H267 617 aa20.52■□□□□ 0.88
LSM4-206ENST00000600289 CASP8AP2Q9UKL3 1982 aa20.52■□□□□ 0.87
LSM4-206ENST00000600289 WDR33Q9C0J8 1336 aaKnown RBP20.52■□□□□ 0.87
LSM4-206ENST00000600289 COL4A5P29400 1685 aa20.51■□□□□ 0.87
LSM4-206ENST00000600289 IARSP41252 1262 aaKnown RBP20.51■□□□□ 0.87
LSM4-206ENST00000600289 DEFB115Q30KQ5 88 aa20.51■□□□□ 0.87
LSM4-206ENST00000600289 TTLL11Q8NHH1 800 aa20.51■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 53.5 ms