RNA–Protein interactions for RNA: ENST00000600026.5

LTBP4-227, Transcript of latent transforming growth factor beta binding protein 4, human

TSL 3

Gene LTBP4, Length 723 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LTBP4-227	ENST00000600026	IRX6	P78412	446 aa	Predicted RBP	27.62	■■■□□ 2.01
LTBP4-227	ENST00000600026	MVP	Q14764	893 aa	Known RBP	27.62	■■■□□ 2.01
LTBP4-227	ENST00000600026	STYK1	Q6J9G0	422 aa		27.62	■■■□□ 2.01
LTBP4-227	ENST00000600026	ZNF622	Q969S3	477 aa	Known RBP eCLIP	27.62	■■■□□ 2.01
LTBP4-227	ENST00000600026	NBPF7	P0C2Y1	421 aa	Predicted RBP	27.61	■■■□□ 2.01
LTBP4-227	ENST00000600026	RPGR	Q92834	1020 aa	Known RBP	27.61	■■■□□ 2.01
LTBP4-227	ENST00000600026	USP44	Q9H0E7	712 aa		27.61	■■■□□ 2.01
LTBP4-227	ENST00000600026	PIM2	Q9P1W9	311 aa		27.61	■■■□□ 2.01
LTBP4-227	ENST00000600026	DDX19B	Q9UMR2	479 aa		27.61	■■■□□ 2.01
LTBP4-227	ENST00000600026	SLX4	Q8IY92	1834 aa		27.61	■■■□□ 2.01
LTBP4-227	ENST00000600026	SF3B3	Q15393	1217 aa	Known RBP	27.6	■■■□□ 2.01
LTBP4-227	ENST00000600026	PLA2G12B	Q9BX93	195 aa		27.6	■■■□□ 2.01
LTBP4-227	ENST00000600026	CHMP4B	Q9H444	224 aa	Known RBP	27.6	■■■□□ 2.01
LTBP4-227	ENST00000600026	CTSW	P56202	376 aa		27.59	■■■□□ 2.01
LTBP4-227	ENST00000600026	CRBN	Q96SW2	442 aa		27.59	■■■□□ 2.01
LTBP4-227	ENST00000600026	HOXA10	P31260	410 aa	Predicted RBP	27.58	■■■□□ 2.01
LTBP4-227	ENST00000600026	SUCLG2	Q96I99	432 aa		27.58	■■■□□ 2.01
LTBP4-227	ENST00000600026	COL4A1	P02462	1669 aa		27.58	■■■□□ 2.01
LTBP4-227	ENST00000600026	CNKSR1	Q969H4	720 aa		27.57	■■■□□ 2
LTBP4-227	ENST00000600026	RBM17	Q96I25	401 aa	Known RBP	27.57	■■■□□ 2
LTBP4-227	ENST00000600026	MEIS3	Q99687	375 aa		27.57	■■■□□ 2
LTBP4-227	ENST00000600026	SPEF2	Q9C093	1822 aa		27.56	■■■□□ 2
LTBP4-227	ENST00000600026	DALRD3	Q5D0E6	543 aa	Known RBP	27.56	■■■□□ 2
LTBP4-227	ENST00000600026	PELP1	Q8IZL8	1130 aa	Known RBP	27.56	■■■□□ 2
LTBP4-227	ENST00000600026	TTLL6	Q8N841	843 aa		27.56	■■■□□ 2
LTBP4-227	ENST00000600026	FOXO4	P98177	505 aa		27.55	■■■□□ 2
LTBP4-227	ENST00000600026	CCDC152	Q4G0S7	254 aa		27.55	■■■□□ 2
LTBP4-227	ENST00000600026	EPHA10	Q5JZY3	1008 aa		27.55	■■■□□ 2
LTBP4-227	ENST00000600026	TTLL11	Q8NHH1	800 aa		27.55	■■■□□ 2
LTBP4-227	ENST00000600026	KAZALD1	Q96I82	304 aa		27.55	■■■□□ 2
LTBP4-227	ENST00000600026	CCDC85A	Q96PX6	553 aa	Predicted RBP	27.55	■■■□□ 2
LTBP4-227	ENST00000600026	BCS1L	Q9Y276	419 aa		27.55	■■■□□ 2
LTBP4-227	ENST00000600026	PRPF40B	Q6NWY9	871 aa	Known RBP	27.54	■■■□□ 2
LTBP4-227	ENST00000600026	DDX46	Q7L014	1031 aa	Known RBP	27.54	■■■□□ 2
LTBP4-227	ENST00000600026	CRAMP1	Q96RY5	1269 aa		27.54	■■■□□ 2
LTBP4-227	ENST00000600026	UBTFL1	P0CB47	393 aa	Predicted RBP	27.53	■■■□□ 2
LTBP4-227	ENST00000600026	YBX3	P16989	372 aa	Known RBP eCLIP	27.53	■■■□□ 2
LTBP4-227	ENST00000600026	ALDH1B1	P30837	517 aa		27.53	■■■□□ 2
LTBP4-227	ENST00000600026	RTL9	Q8NET4	1388 aa		27.52	■■■□□ 2
LTBP4-227	ENST00000600026	CSF1R	P07333	972 aa		27.52	■■■□□ 2
LTBP4-227	ENST00000600026	GNAI3	P08754	354 aa		27.52	■■■□□ 2
LTBP4-227	ENST00000600026	EXOC6	Q8TAG9	804 aa		27.52	■■■□□ 2
LTBP4-227	ENST00000600026	GREM2	Q9H772	168 aa		27.52	■■■□□ 2
LTBP4-227	ENST00000600026	GPR162	Q16538	588 aa		27.51	■■□□□ 1.99
LTBP4-227	ENST00000600026	BICC1	Q9H694	974 aa	Known RBP	27.51	■■□□□ 1.99
LTBP4-227	ENST00000600026	SEC31B	Q9NQW1	1179 aa		27.51	■■□□□ 1.99
LTBP4-227	ENST00000600026	LRRC37A	A6NMS7	1700 aa		27.5	■■□□□ 1.99
LTBP4-227	ENST00000600026	ZBTB7B	O15156	539 aa	Predicted RBP	27.5	■■□□□ 1.99
LTBP4-227	ENST00000600026	GRAP	Q13588	217 aa		27.5	■■□□□ 1.99
LTBP4-227	ENST00000600026	AAMP	Q13685	434 aa		27.5	■■□□□ 1.99
LTBP4-227	ENST00000600026	FAM161A	Q3B820	660 aa		27.5	■■□□□ 1.99
LTBP4-227	ENST00000600026	LMBR1L	Q6UX01	489 aa		27.5	■■□□□ 1.99
LTBP4-227	ENST00000600026	GRAPL	Q8TC17	118 aa	Predicted RBP	27.5	■■□□□ 1.99
LTBP4-227	ENST00000600026	HDAC5	Q9UQL6	1122 aa		27.5	■■□□□ 1.99
LTBP4-227	ENST00000600026	RABL6	Q3YEC7	729 aa	Predicted RBP	27.49	■■□□□ 1.99
LTBP4-227	ENST00000600026	ANKRD44	Q8N8A2	993 aa		27.49	■■□□□ 1.99
LTBP4-227	ENST00000600026	CELF1	Q92879	486 aa	Known RBP	27.49	■■□□□ 1.99
LTBP4-227	ENST00000600026	PPEF1	O14829	653 aa	Predicted RBP	27.48	■■□□□ 1.99
LTBP4-227	ENST00000600026	ZNF219	Q9P2Y4	722 aa	Predicted RBP	27.48	■■□□□ 1.99
LTBP4-227	ENST00000600026	CHMP3	Q9Y3E7	222 aa		27.48	■■□□□ 1.99
LTBP4-227	ENST00000600026	LRRFIP2	Q9Y608	721 aa	Known RBP	27.48	■■□□□ 1.99
LTBP4-227	ENST00000600026	FER1L6	Q2WGJ9	1857 aa		27.47	■■□□□ 1.99
LTBP4-227	ENST00000600026	ITGA6	P23229	1130 aa		27.46	■■□□□ 1.99
LTBP4-227	ENST00000600026	IFFO2	Q5TF58	517 aa		27.46	■■□□□ 1.99
LTBP4-227	ENST00000600026	ERICH6B	Q5W0A0	696 aa		27.46	■■□□□ 1.99
LTBP4-227	ENST00000600026	C21orf2	O43822	256 aa		27.45	■■□□□ 1.98
LTBP4-227	ENST00000600026	SLC51A	Q86UW1	340 aa		27.45	■■□□□ 1.98
LTBP4-227	ENST00000600026	C7orf43	Q8WVR3	580 aa		27.45	■■□□□ 1.98
LTBP4-227	ENST00000600026	BBOX1	O75936	387 aa		27.44	■■□□□ 1.98
LTBP4-227	ENST00000600026	CDC5L	Q99459	802 aa	Known RBP	27.44	■■□□□ 1.98
LTBP4-227	ENST00000600026	ZBTB40	Q9NUA8	1239 aa		27.44	■■□□□ 1.98
LTBP4-227	ENST00000600026	GNAI2	P04899	355 aa		27.43	■■□□□ 1.98
LTBP4-227	ENST00000600026	RPS8	P62241	208 aa	Known RBP	27.43	■■□□□ 1.98
LTBP4-227	ENST00000600026	OLFM4	Q6UX06	510 aa		27.43	■■□□□ 1.98
LTBP4-227	ENST00000600026	ANKRD18B	A2A2Z9	1011 aa		27.42	■■□□□ 1.98
LTBP4-227	ENST00000600026	IFIT5	Q13325	482 aa	Known RBP	27.42	■■□□□ 1.98
LTBP4-227	ENST00000600026	ANKRD18A	Q8IVF6	992 aa		27.42	■■□□□ 1.98
LTBP4-227	ENST00000600026		A0A1B0GUL6	1792 aa		27.42	■■□□□ 1.98
LTBP4-227	ENST00000600026	SNED1	Q8TER0	1413 aa		27.41	■■□□□ 1.98
LTBP4-227	ENST00000600026	GRIN3B	O60391	1043 aa		27.41	■■□□□ 1.98
LTBP4-227	ENST00000600026	CCDC57	Q2TAC2	916 aa		27.41	■■□□□ 1.98
LTBP4-227	ENST00000600026	TMC4	Q7Z404	712 aa		27.41	■■□□□ 1.98
LTBP4-227	ENST00000600026	C1orf115	Q9H7X2	142 aa		27.41	■■□□□ 1.98
LTBP4-227	ENST00000600026	ATP6V0A2	Q9Y487	856 aa		27.41	■■□□□ 1.98
LTBP4-227	ENST00000600026	CCDC93	Q567U6	631 aa		27.4	■■□□□ 1.98
LTBP4-227	ENST00000600026	SOGA3	Q5TF21	947 aa		27.4	■■□□□ 1.98
LTBP4-227	ENST00000600026	LTBP1	Q14766	1721 aa		27.4	■■□□□ 1.98
LTBP4-227	ENST00000600026	IGHMBP2	P38935	993 aa	Known RBP	27.39	■■□□□ 1.98
LTBP4-227	ENST00000600026	SP8	Q8IXZ3	490 aa		27.39	■■□□□ 1.98
LTBP4-227	ENST00000600026	CC2D2B	Q6DHV5	1058 aa		27.38	■■□□□ 1.97
LTBP4-227	ENST00000600026	SBF1	O95248	1867 aa		27.38	■■□□□ 1.97
LTBP4-227	ENST00000600026	CCDC88A	Q3V6T2	1871 aa		27.38	■■□□□ 1.97
LTBP4-227	ENST00000600026	GOLGB1	Q14789	3259 aa	Known RBP	27.38	■■□□□ 1.97
LTBP4-227	ENST00000600026	TAF7L	Q5H9L4	462 aa		27.37	■■□□□ 1.97
LTBP4-227	ENST00000600026	ARHGAP27	Q6ZUM4	889 aa		27.37	■■□□□ 1.97
LTBP4-227	ENST00000600026	ZNF594	Q96JF6	807 aa	Predicted RBP	27.37	■■□□□ 1.97
LTBP4-227	ENST00000600026	MTX1	Q13505	466 aa		27.36	■■□□□ 1.97
LTBP4-227	ENST00000600026	TMX4	Q9H1E5	349 aa	Predicted RBP	27.36	■■□□□ 1.97
LTBP4-227	ENST00000600026	DUOX1	Q9NRD9	1551 aa		27.35	■■□□□ 1.97
LTBP4-227	ENST00000600026	NFKBIE	O00221	500 aa		27.35	■■□□□ 1.97

Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms