RNA–Protein interactions for RNA: ENST00000599322.5

LIG1-218, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 620 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-218ENST00000599322 GRAPQ13588 217 aa18.04■□□□□ 0.48
LIG1-218ENST00000599322 DIEXFQ68CQ4 756 aaKnown RBP18.04■□□□□ 0.48
LIG1-218ENST00000599322 C3orf67Q6ZVT6 689 aa18.04■□□□□ 0.48
LIG1-218ENST00000599322 GRAPLQ8TC17 118 aaPredicted RBP18.04■□□□□ 0.48
LIG1-218ENST00000599322 ZNF277Q9NRM2 450 aaPredicted RBP18.04■□□□□ 0.48
LIG1-218ENST00000599322 ATP6V0A2Q9Y487 856 aa18.04■□□□□ 0.48
LIG1-218ENST00000599322 SCN4AP35499 1836 aa18.04■□□□□ 0.48
LIG1-218ENST00000599322 ABCC4O15439 1325 aa18.03■□□□□ 0.48
LIG1-218ENST00000599322 SF3B3Q15393 1217 aaKnown RBP18.03■□□□□ 0.48
LIG1-218ENST00000599322 SP8Q8IXZ3 490 aa18.03■□□□□ 0.48
LIG1-218ENST00000599322 CCDC152Q4G0S7 254 aa18.02■□□□□ 0.48
LIG1-218ENST00000599322 OLFM4Q6UX06 510 aa18.02■□□□□ 0.48
LIG1-218ENST00000599322 DPP8Q6V1X1 898 aaPredicted RBP18.02■□□□□ 0.48
LIG1-218ENST00000599322 LARGE2Q8N3Y3 721 aa18.02■□□□□ 0.48
LIG1-218ENST00000599322 VPS33BQ9H267 617 aa18.02■□□□□ 0.48
LIG1-218ENST00000599322 PDE8AO60658 829 aa18.01■□□□□ 0.47
LIG1-218ENST00000599322 EIF6P56537 245 aaKnown RBP18.01■□□□□ 0.47
LIG1-218ENST00000599322 MPNDQ8N594 471 aa18.01■□□□□ 0.47
LIG1-218ENST00000599322 DNAAF4Q8WXU2 420 aa18.01■□□□□ 0.47
LIG1-218ENST00000599322 IQCA1LA6NCM1 817 aa18■□□□□ 0.47
LIG1-218ENST00000599322 G2E3Q7L622 706 aa18■□□□□ 0.47
LIG1-218ENST00000599322 SPINK5Q9NQ38 1064 aaPredicted RBP18■□□□□ 0.47
LIG1-218ENST00000599322 DDNO94850 711 aaPredicted RBP17.99■□□□□ 0.47
LIG1-218ENST00000599322 NIM1KQ8IY84 436 aa17.99■□□□□ 0.47
LIG1-218ENST00000599322 PPIP5K2O43314 1243 aa17.98■□□□□ 0.47
LIG1-218ENST00000599322 RPS8P62241 208 aaKnown RBP17.98■□□□□ 0.47
LIG1-218ENST00000599322 LINS1Q8NG48 757 aa17.98■□□□□ 0.47
LIG1-218ENST00000599322 ZNF521Q96K83 1311 aa17.98■□□□□ 0.47
LIG1-218ENST00000599322 CDHR2Q9BYE9 1310 aa17.98■□□□□ 0.47
LIG1-218ENST00000599322 NEURL1BA8MQ27 555 aa17.97■□□□□ 0.47
LIG1-218ENST00000599322 POTEIP0CG38 1075 aa17.97■□□□□ 0.47
LIG1-218ENST00000599322 POTEJP0CG39 1038 aa17.97■□□□□ 0.47
LIG1-218ENST00000599322 IGKV5-2P06315 115 aa17.96■□□□□ 0.47
LIG1-218ENST00000599322 CWF19L2Q2TBE0 894 aaKnown RBP17.96■□□□□ 0.47
LIG1-218ENST00000599322 COL13A1Q5TAT6 717 aaPredicted RBP17.96■□□□□ 0.47
LIG1-218ENST00000599322 JARID2Q92833 1246 aaPredicted RBP17.96■□□□□ 0.47
LIG1-218ENST00000599322 CDC5LQ99459 802 aaKnown RBP17.96■□□□□ 0.47
LIG1-218ENST00000599322 NSFL1CQ9UNZ2 370 aaKnown RBP17.96■□□□□ 0.47
LIG1-218ENST00000599322 ADAMTSL1Q8N6G6 1762 aa17.96■□□□□ 0.47
LIG1-218ENST00000599322 G3V3G9 751 aa17.95■□□□□ 0.46
LIG1-218ENST00000599322 SLFN5Q08AF3 891 aa17.95■□□□□ 0.46
LIG1-218ENST00000599322 GCKRQ14397 625 aa17.95■□□□□ 0.46
LIG1-218ENST00000599322 DCAF8Q5TAQ9 597 aa17.95■□□□□ 0.46
LIG1-218ENST00000599322 UBE3BQ7Z3V4 1068 aa17.95■□□□□ 0.46
LIG1-218ENST00000599322 ANKRD18AQ8IVF6 992 aa17.95■□□□□ 0.46
LIG1-218ENST00000599322 EYA3Q99504 573 aa17.95■□□□□ 0.46
LIG1-218ENST00000599322 GJA3Q9Y6H8 435 aa17.95■□□□□ 0.46
LIG1-218ENST00000599322 SNED1Q8TER0 1413 aa17.95■□□□□ 0.46
LIG1-218ENST00000599322 CACNA1FO60840 1977 aa17.95■□□□□ 0.46
LIG1-218ENST00000599322 C6orf229H3BNL8 230 aa17.94■□□□□ 0.46
LIG1-218ENST00000599322 FZD9O00144 591 aa17.94■□□□□ 0.46
LIG1-218ENST00000599322 LMOD1P29536 600 aaPredicted RBP17.94■□□□□ 0.46
LIG1-218ENST00000599322 CTSWP56202 376 aa17.94■□□□□ 0.46
LIG1-218ENST00000599322 CHADLQ6NUI6 762 aa17.94■□□□□ 0.46
LIG1-218ENST00000599322 GPC2Q8N158 579 aa17.94■□□□□ 0.46
LIG1-218ENST00000599322 CELF1Q92879 486 aaKnown RBP17.94■□□□□ 0.46
LIG1-218ENST00000599322 RTFDC1Q9BY42 306 aaPredicted RBP17.94■□□□□ 0.46
LIG1-218ENST00000599322 LAMB2P55268 1798 aa17.94■□□□□ 0.46
LIG1-218ENST00000599322 H7C1W4 665 aa17.93■□□□□ 0.46
LIG1-218ENST00000599322 AOC3Q16853 763 aa17.93■□□□□ 0.46
LIG1-218ENST00000599322 SLC4A10Q6U841 1118 aa17.93■□□□□ 0.46
LIG1-218ENST00000599322 CCDC85AQ96PX6 553 aaPredicted RBP17.93■□□□□ 0.46
LIG1-218ENST00000599322 ANKIB1Q9P2G1 1089 aa17.93■□□□□ 0.46
LIG1-218ENST00000599322 ZNF541Q9H0D2 1346 aa17.93■□□□□ 0.46
LIG1-218ENST00000599322 CT47B1P0C2W7 299 aaPredicted RBP17.92■□□□□ 0.46
LIG1-218ENST00000599322 WASHC4Q2M389 1173 aa17.92■□□□□ 0.46
LIG1-218ENST00000599322 L3MBTL3Q96JM7 780 aaPredicted RBP17.92■□□□□ 0.46
LIG1-218ENST00000599322 C9orf78Q9NZ63 289 aaPredicted RBP17.92■□□□□ 0.46
LIG1-218ENST00000599322 HACL1Q9UJ83 578 aa17.92■□□□□ 0.46
LIG1-218ENST00000599322 ZNRF3Q9ULT6 936 aa17.92■□□□□ 0.46
LIG1-218ENST00000599322 COL4A5P29400 1685 aa17.92■□□□□ 0.46
LIG1-218ENST00000599322 IGHMBP2P38935 993 aaKnown RBP17.91■□□□□ 0.46
LIG1-218ENST00000599322 KIAA2012Q0VF49 1180 aa17.91■□□□□ 0.46
LIG1-218ENST00000599322 TNIP1Q15025 636 aa17.91■□□□□ 0.46
LIG1-218ENST00000599322 PNMA8AQ86V59 439 aaPredicted RBP17.91■□□□□ 0.46
LIG1-218ENST00000599322 MIER1Q8N108 512 aa17.91■□□□□ 0.46
LIG1-218ENST00000599322 ZC3H12CQ9C0D7 883 aaKnown RBP17.91■□□□□ 0.46
LIG1-218ENST00000599322 SRCIN1Q9C0H9 1055 aa17.91■□□□□ 0.46
LIG1-218ENST00000599322 SEC31BQ9NQW1 1179 aa17.91■□□□□ 0.46
LIG1-218ENST00000599322 LTBP1Q14766 1721 aa17.9■□□□□ 0.46
LIG1-218ENST00000599322 DDX60Q8IY21 1712 aaKnown RBP17.9■□□□□ 0.46
LIG1-218ENST00000599322 F6X3S4 739 aa17.9■□□□□ 0.46
LIG1-218ENST00000599322 ALDH1L1O75891 902 aa17.9■□□□□ 0.46
LIG1-218ENST00000599322 HSPA1AP0DMV8 641 aaKnown RBP17.9■□□□□ 0.46
LIG1-218ENST00000599322 HSPA1BP0DMV9 641 aaKnown RBP17.9■□□□□ 0.46
LIG1-218ENST00000599322 ALDH1L2Q3SY69 923 aa17.9■□□□□ 0.46
LIG1-218ENST00000599322 TTLL11Q8NHH1 800 aa17.9■□□□□ 0.46
LIG1-218ENST00000599322 TAF1DQ9H5J8 278 aaPredicted RBP17.9■□□□□ 0.46
LIG1-218ENST00000599322 CLEC11AQ9Y240 323 aa17.9■□□□□ 0.46
LIG1-218ENST00000599322 PTPRCP08575 1304 aa17.9■□□□□ 0.46
LIG1-218ENST00000599322 EAPPQ56P03 285 aaPredicted RBP17.89■□□□□ 0.45
LIG1-218ENST00000599322 BEND3Q5T5X7 828 aa17.89■□□□□ 0.45
LIG1-218ENST00000599322 MPHOSPH8Q99549 860 aa17.89■□□□□ 0.45
LIG1-218ENST00000599322 GGA1Q9UJY5 639 aa17.89■□□□□ 0.45
LIG1-218ENST00000599322 PASKQ96RG2 1323 aa17.89■□□□□ 0.45
LIG1-218ENST00000599322 GPSM2P81274 684 aa17.88■□□□□ 0.45
LIG1-218ENST00000599322 CIAPIN1Q6FI81 312 aa17.88■□□□□ 0.45
LIG1-218ENST00000599322 SLC51AQ86UW1 340 aa17.88■□□□□ 0.45
LIG1-218ENST00000599322 LDHDQ86WU2 507 aa17.88■□□□□ 0.45
LIG1-218ENST00000599322 MRPL50Q8N5N7 158 aaKnown RBP17.88■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms