RNA–Protein interactions for RNA: ENST00000599138.5

VRK3-215, Transcript of vaccinia related kinase 3, humanhuman

TSL 4

Gene VRK3, Length 503 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-215ENST00000599138 DNAAF4Q8WXU2 420 aa12.41□□□□□ -0.42
VRK3-215ENST00000599138 CDCA7LQ96GN5 454 aa12.41□□□□□ -0.42
VRK3-215ENST00000599138 ZNF277Q9NRM2 450 aaPredicted RBP12.41□□□□□ -0.42
VRK3-215ENST00000599138 H7C1W4 665 aa12.4□□□□□ -0.42
VRK3-215ENST00000599138 CWF19L2Q2TBE0 894 aaKnown RBP12.4□□□□□ -0.42
VRK3-215ENST00000599138 TMC4Q7Z404 712 aa12.4□□□□□ -0.42
VRK3-215ENST00000599138 LRRC37AA6NMS7 1700 aa12.4□□□□□ -0.43
VRK3-215ENST00000599138 COL4A1P02462 1669 aa12.39□□□□□ -0.43
VRK3-215ENST00000599138 PDE8AO60658 829 aa12.39□□□□□ -0.43
VRK3-215ENST00000599138 IARSP41252 1262 aaKnown RBP12.39□□□□□ -0.43
VRK3-215ENST00000599138 GCKRQ14397 625 aa12.39□□□□□ -0.43
VRK3-215ENST00000599138 LINS1Q8NG48 757 aa12.39□□□□□ -0.43
VRK3-215ENST00000599138 JARID2Q92833 1246 aaPredicted RBP12.39□□□□□ -0.43
VRK3-215ENST00000599138 CELF1Q92879 486 aaKnown RBP12.39□□□□□ -0.43
VRK3-215ENST00000599138 RTFDC1Q9BY42 306 aaPredicted RBP12.39□□□□□ -0.43
VRK3-215ENST00000599138 WDR90Q96KV7 1748 aa12.39□□□□□ -0.43
VRK3-215ENST00000599138 MYH3P11055 1940 aa12.39□□□□□ -0.43
VRK3-215ENST00000599138 COL4A5P29400 1685 aa12.38□□□□□ -0.43
VRK3-215ENST00000599138 POTECB2RU33 542 aa12.38□□□□□ -0.43
VRK3-215ENST00000599138 FZD9O00144 591 aa12.38□□□□□ -0.43
VRK3-215ENST00000599138 CASP7P55210 303 aa12.38□□□□□ -0.43
VRK3-215ENST00000599138 DPY19L2Q6NUT2 758 aa12.38□□□□□ -0.43
VRK3-215ENST00000599138 RRAGCQ9HB90 399 aa12.38□□□□□ -0.43
VRK3-215ENST00000599138 F6X3S4 739 aa12.37□□□□□ -0.43
VRK3-215ENST00000599138 TOMM70O94826 608 aa12.37□□□□□ -0.43
VRK3-215ENST00000599138 RPS8P62241 208 aaKnown RBP12.37□□□□□ -0.43
VRK3-215ENST00000599138 CCDC152Q4G0S7 254 aa12.37□□□□□ -0.43
VRK3-215ENST00000599138 BEND3Q5T5X7 828 aa12.37□□□□□ -0.43
VRK3-215ENST00000599138 MRPL50Q8N5N7 158 aaKnown RBP12.37□□□□□ -0.43
VRK3-215ENST00000599138 PLA2G12BQ9BX93 195 aa12.37□□□□□ -0.43
VRK3-215ENST00000599138 TMX4Q9H1E5 349 aaPredicted RBP12.37□□□□□ -0.43
VRK3-215ENST00000599138 VPS33BQ9H267 617 aa12.37□□□□□ -0.43
VRK3-215ENST00000599138 SEC31BQ9NQW1 1179 aa12.37□□□□□ -0.43
VRK3-215ENST00000599138 DUOX1Q9NRD9 1551 aa12.36□□□□□ -0.43
VRK3-215ENST00000599138 VEGFAP15692 232 aaPredicted RBP12.36□□□□□ -0.43
VRK3-215ENST00000599138 CTSWP56202 376 aa12.36□□□□□ -0.43
VRK3-215ENST00000599138 UBE3BQ7Z3V4 1068 aa12.36□□□□□ -0.43
VRK3-215ENST00000599138 MPNDQ8N594 471 aa12.36□□□□□ -0.43
VRK3-215ENST00000599138 TTLL11Q8NHH1 800 aa12.36□□□□□ -0.43
VRK3-215ENST00000599138 RBM46Q8TBY0 533 aaKnown RBP12.36□□□□□ -0.43
VRK3-215ENST00000599138 SSH1Q8WYL5 1049 aa12.36□□□□□ -0.43
VRK3-215ENST00000599138 L3MBTL3Q96JM7 780 aaPredicted RBP12.36□□□□□ -0.43
VRK3-215ENST00000599138 LTBP1Q14766 1721 aa12.36□□□□□ -0.43
VRK3-215ENST00000599138 ZNF541Q9H0D2 1346 aa12.36□□□□□ -0.43
VRK3-215ENST00000599138 RTL9Q8NET4 1388 aa12.35□□□□□ -0.43
VRK3-215ENST00000599138 DDNO94850 711 aaPredicted RBP12.35□□□□□ -0.43
VRK3-215ENST00000599138 CT47B1P0C2W7 299 aaPredicted RBP12.35□□□□□ -0.43
VRK3-215ENST00000599138 DPP8Q6V1X1 898 aaPredicted RBP12.35□□□□□ -0.43
VRK3-215ENST00000599138 SUPT20HQ8NEM7 779 aa12.35□□□□□ -0.43
VRK3-215ENST00000599138 JDP2Q8WYK2 163 aa12.35□□□□□ -0.43
VRK3-215ENST00000599138 ALDH1L1O75891 902 aa12.34□□□□□ -0.43
VRK3-215ENST00000599138 CSF1RP07333 972 aa12.34□□□□□ -0.43
VRK3-215ENST00000599138 KIAA2012Q0VF49 1180 aa12.34□□□□□ -0.43
VRK3-215ENST00000599138 ALDH1L2Q3SY69 923 aa12.34□□□□□ -0.43
VRK3-215ENST00000599138 LARGE2Q8N3Y3 721 aa12.34□□□□□ -0.43
VRK3-215ENST00000599138 CEP350Q5VT06 3117 aa12.34□□□□□ -0.43
VRK3-215ENST00000599138 SCN4AP35499 1836 aa12.34□□□□□ -0.43
VRK3-215ENST00000599138 PPIP5K2O43314 1243 aa12.33□□□□□ -0.44
VRK3-215ENST00000599138 GPSM2P81274 684 aa12.33□□□□□ -0.44
VRK3-215ENST00000599138 AOC3Q16853 763 aa12.33□□□□□ -0.44
VRK3-215ENST00000599138 CCDC85AQ96PX6 553 aaPredicted RBP12.33□□□□□ -0.44
VRK3-215ENST00000599138 GREM2Q9H772 168 aa12.33□□□□□ -0.44
VRK3-215ENST00000599138 PODXL2Q9NZ53 605 aa12.33□□□□□ -0.44
VRK3-215ENST00000599138 PTPRCP08575 1304 aa12.33□□□□□ -0.44
VRK3-215ENST00000599138 BRPF1P55201 1214 aaPredicted RBP12.32□□□□□ -0.44
VRK3-215ENST00000599138 C16orf71Q8IYS4 520 aaPredicted RBP12.32□□□□□ -0.44
VRK3-215ENST00000599138 GPC2Q8N158 579 aa12.32□□□□□ -0.44
VRK3-215ENST00000599138 SRCIN1Q9C0H9 1055 aa12.32□□□□□ -0.44
VRK3-215ENST00000599138 POLLQ9UGP5 575 aa12.32□□□□□ -0.44
VRK3-215ENST00000599138 NSFL1CQ9UNZ2 370 aaKnown RBP12.32□□□□□ -0.44
VRK3-215ENST00000599138 GRM8O00222 908 aa12.31□□□□□ -0.44
VRK3-215ENST00000599138 HSPA6P17066 643 aa12.31□□□□□ -0.44
VRK3-215ENST00000599138 EIF6P56537 245 aaKnown RBP12.31□□□□□ -0.44
VRK3-215ENST00000599138 FOXO4P98177 505 aa12.31□□□□□ -0.44
VRK3-215ENST00000599138 FSTL1Q12841 308 aa12.31□□□□□ -0.44
VRK3-215ENST00000599138 ANKRD18AQ8IVF6 992 aa12.31□□□□□ -0.44
VRK3-215ENST00000599138 NIM1KQ8IY84 436 aa12.31□□□□□ -0.44
VRK3-215ENST00000599138 TBC1D16Q8TBP0 767 aa12.31□□□□□ -0.44
VRK3-215ENST00000599138 CDC5LQ99459 802 aaKnown RBP12.31□□□□□ -0.44
VRK3-215ENST00000599138 BCL2L13Q9BXK5 485 aa12.31□□□□□ -0.44
VRK3-215ENST00000599138 BSDC1Q9NW68 430 aaPredicted RBP12.31□□□□□ -0.44
VRK3-215ENST00000599138 ZNRF3Q9ULT6 936 aa12.31□□□□□ -0.44
VRK3-215ENST00000599138 UTYO14607 1347 aa12.31□□□□□ -0.44
VRK3-215ENST00000599138 IQCA1LA6NCM1 817 aa12.3□□□□□ -0.44
VRK3-215ENST00000599138 SLC4A10Q6U841 1118 aa12.3□□□□□ -0.44
VRK3-215ENST00000599138 SMC1BQ8NDV3 1235 aa12.3□□□□□ -0.44
VRK3-215ENST00000599138 SMC4Q9NTJ3 1288 aa12.3□□□□□ -0.44
VRK3-215ENST00000599138 ITGA6P23229 1130 aa12.29□□□□□ -0.44
VRK3-215ENST00000599138 RARSP54136 660 aaKnown RBP12.29□□□□□ -0.44
VRK3-215ENST00000599138 HNRNPUQ00839 825 aaKnown RBP eCLIP12.29□□□□□ -0.44
VRK3-215ENST00000599138 CXCL9Q07325 125 aa12.29□□□□□ -0.44
VRK3-215ENST00000599138 WASHC4Q2M389 1173 aa12.29□□□□□ -0.44
VRK3-215ENST00000599138 FAM161AQ3B820 660 aa12.29□□□□□ -0.44
VRK3-215ENST00000599138 EPHA10Q5JZY3 1008 aa12.29□□□□□ -0.44
VRK3-215ENST00000599138 TAF1DQ9H5J8 278 aaPredicted RBP12.29□□□□□ -0.44
VRK3-215ENST00000599138 MINPP1Q9UNW1 487 aa12.29□□□□□ -0.44
VRK3-215ENST00000599138 XDHP47989 1333 aa12.29□□□□□ -0.44
VRK3-215ENST00000599138 SPEF2Q9C093 1822 aa12.28□□□□□ -0.44
VRK3-215ENST00000599138 YDJCA8MPS7 323 aa12.28□□□□□ -0.44
VRK3-215ENST00000599138 C6orf229H3BNL8 230 aa12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms