RNA–Protein interactions for RNA: ENST00000596672.5

LIG1-213, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 792 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-213ENST00000596672 YDJCA8MPS7 323 aa13.57□□□□□ -0.24
LIG1-213ENST00000596672 IRS4O14654 1257 aaPredicted RBP13.57□□□□□ -0.24
LIG1-213ENST00000596672 BBOX1O75936 387 aa13.57□□□□□ -0.24
LIG1-213ENST00000596672 EPS15P42566 896 aa13.57□□□□□ -0.24
LIG1-213ENST00000596672 RIC3Q7Z5B4 369 aa13.57□□□□□ -0.24
LIG1-213ENST00000596672 LARGE2Q8N3Y3 721 aa13.57□□□□□ -0.24
LIG1-213ENST00000596672 JMYQ8N9B5 988 aa13.57□□□□□ -0.24
LIG1-213ENST00000596672 GPR101Q96P66 508 aaPredicted RBP13.57□□□□□ -0.24
LIG1-213ENST00000596672 SCN9AQ15858 1988 aa13.57□□□□□ -0.24
LIG1-213ENST00000596672 EPHX2P34913 555 aa13.56□□□□□ -0.24
LIG1-213ENST00000596672 CALD1Q05682 793 aaKnown RBP13.56□□□□□ -0.24
LIG1-213ENST00000596672 CXCL9Q07325 125 aa13.56□□□□□ -0.24
LIG1-213ENST00000596672 GPC2Q8N158 579 aa13.56□□□□□ -0.24
LIG1-213ENST00000596672 METTL22Q9BUU2 404 aaPredicted RBP13.56□□□□□ -0.24
LIG1-213ENST00000596672 KCNQ5Q9NR82 932 aa13.56□□□□□ -0.24
LIG1-213ENST00000596672 GJA3Q9Y6H8 435 aa13.56□□□□□ -0.24
LIG1-213ENST00000596672 FANCIQ9NVI1 1328 aa13.56□□□□□ -0.24
LIG1-213ENST00000596672 PI4KAP2A4QPH2 592 aa13.55□□□□□ -0.24
LIG1-213ENST00000596672 PPIP5K2O43314 1243 aa13.55□□□□□ -0.24
LIG1-213ENST00000596672 ANP32CO43423 234 aa13.55□□□□□ -0.24
LIG1-213ENST00000596672 VAMP4O75379 141 aa13.55□□□□□ -0.24
LIG1-213ENST00000596672 GPSM2P81274 684 aa13.55□□□□□ -0.24
LIG1-213ENST00000596672 TWISTNBQ3B726 338 aaPredicted RBP13.55□□□□□ -0.24
LIG1-213ENST00000596672 DDX46Q7L014 1031 aaKnown RBP13.55□□□□□ -0.24
LIG1-213ENST00000596672 MPNDQ8N594 471 aa13.55□□□□□ -0.24
LIG1-213ENST00000596672 PI4KAP1Q8N8J0 262 aa13.55□□□□□ -0.24
LIG1-213ENST00000596672 ZBTB38Q8NAP3 1195 aaPredicted RBP13.55□□□□□ -0.24
LIG1-213ENST00000596672 POLLQ9UGP5 575 aa13.55□□□□□ -0.24
LIG1-213ENST00000596672 HACL1Q9UJ83 578 aa13.55□□□□□ -0.24
LIG1-213ENST00000596672 MAP3K2Q9Y2U5 619 aa13.55□□□□□ -0.24
LIG1-213ENST00000596672 IL16Q14005 1332 aa13.55□□□□□ -0.24
LIG1-213ENST00000596672 PCCAP05165 728 aaPredicted RBP13.54□□□□□ -0.24
LIG1-213ENST00000596672 GOLGA2Q08379 1002 aa13.54□□□□□ -0.24
LIG1-213ENST00000596672 KIAA2012Q0VF49 1180 aa13.54□□□□□ -0.24
LIG1-213ENST00000596672 CWF19L2Q2TBE0 894 aaKnown RBP13.54□□□□□ -0.24
LIG1-213ENST00000596672 NCBP3Q53F19 620 aaKnown RBP13.54□□□□□ -0.24
LIG1-213ENST00000596672 EAPPQ56P03 285 aaPredicted RBP13.54□□□□□ -0.24
LIG1-213ENST00000596672 CCDC30Q5VVM6 783 aa13.54□□□□□ -0.24
LIG1-213ENST00000596672 MAP1SQ66K74 1059 aaPredicted RBP13.54□□□□□ -0.24
LIG1-213ENST00000596672 KSR2Q6VAB6 950 aa13.54□□□□□ -0.24
LIG1-213ENST00000596672 LDHDQ86WU2 507 aa13.54□□□□□ -0.24
LIG1-213ENST00000596672 JDP2Q8WYK2 163 aa13.54□□□□□ -0.24
LIG1-213ENST00000596672 CCDC85AQ96PX6 553 aaPredicted RBP13.54□□□□□ -0.24
LIG1-213ENST00000596672 POLR2AP24928 1970 aaKnown RBP13.53□□□□□ -0.24
LIG1-213ENST00000596672 IQCA1LA6NCM1 817 aa13.53□□□□□ -0.24
LIG1-213ENST00000596672 SLC4A2P04920 1241 aa13.53□□□□□ -0.24
LIG1-213ENST00000596672 EXOSC9Q06265 439 aaKnown RBP13.53□□□□□ -0.24
LIG1-213ENST00000596672 DPP8Q6V1X1 898 aaPredicted RBP13.53□□□□□ -0.24
LIG1-213ENST00000596672 CCDC191Q8NCU4 936 aa13.53□□□□□ -0.24
LIG1-213ENST00000596672 CACNA1FO60840 1977 aa13.52□□□□□ -0.24
LIG1-213ENST00000596672 RAD17O75943 681 aa13.52□□□□□ -0.25
LIG1-213ENST00000596672 HIRAP54198 1017 aaPredicted RBP13.52□□□□□ -0.25
LIG1-213ENST00000596672 CASP7P55210 303 aa13.52□□□□□ -0.25
LIG1-213ENST00000596672 EIF6P56537 245 aaKnown RBP13.52□□□□□ -0.25
LIG1-213ENST00000596672 GRIPAP1Q4V328 841 aa13.52□□□□□ -0.25
LIG1-213ENST00000596672 NIM1KQ8IY84 436 aa13.52□□□□□ -0.25
LIG1-213ENST00000596672 FAM9BQ8IZU0 186 aa13.52□□□□□ -0.25
LIG1-213ENST00000596672 CWC25Q9NXE8 425 aaPredicted RBP13.52□□□□□ -0.25
LIG1-213ENST00000596672 ZNRF3Q9ULT6 936 aa13.52□□□□□ -0.25
LIG1-213ENST00000596672 ZNF521Q96K83 1311 aa13.52□□□□□ -0.25
LIG1-213ENST00000596672 MYH3P11055 1940 aa13.51□□□□□ -0.25
LIG1-213ENST00000596672 SPEF2Q9C093 1822 aa13.51□□□□□ -0.25
LIG1-213ENST00000596672 NEURL1BA8MQ27 555 aa13.51□□□□□ -0.25
LIG1-213ENST00000596672 GMPSP49915 693 aaPredicted RBP13.51□□□□□ -0.25
LIG1-213ENST00000596672 RPS8P62241 208 aaKnown RBP13.51□□□□□ -0.25
LIG1-213ENST00000596672 WDR63Q8IWG1 891 aa13.51□□□□□ -0.25
LIG1-213ENST00000596672 RTL9Q8NET4 1388 aa13.5□□□□□ -0.25
LIG1-213ENST00000596672 H7C1W4 665 aa13.5□□□□□ -0.25
LIG1-213ENST00000596672 TRAF5O00463 557 aa13.5□□□□□ -0.25
LIG1-213ENST00000596672 RIMBP2O15034 1052 aa13.5□□□□□ -0.25
LIG1-213ENST00000596672 DLK2Q6UY11 383 aa13.5□□□□□ -0.25
LIG1-213ENST00000596672 CNTROBQ8N137 903 aa13.5□□□□□ -0.25
LIG1-213ENST00000596672 TBC1D16Q8TBP0 767 aa13.5□□□□□ -0.25
LIG1-213ENST00000596672 VPS33BQ9H267 617 aa13.5□□□□□ -0.25
LIG1-213ENST00000596672 DBNDD1Q9H9R9 158 aa13.5□□□□□ -0.25
LIG1-213ENST00000596672 GPRC5DQ9NZD1 345 aa13.5□□□□□ -0.25
LIG1-213ENST00000596672 MKRN1Q9UHC7 482 aaKnown RBP13.5□□□□□ -0.25
LIG1-213ENST00000596672 NSFL1CQ9UNZ2 370 aaKnown RBP13.5□□□□□ -0.25
LIG1-213ENST00000596672 ZBTB12Q9Y330 459 aaPredicted RBP13.5□□□□□ -0.25
LIG1-213ENST00000596672 CDHR2Q9BYE9 1310 aa13.49□□□□□ -0.25
LIG1-213ENST00000596672 ZNF646O15015 1829 aaPredicted RBP13.49□□□□□ -0.25
LIG1-213ENST00000596672 PDE8AO60658 829 aa13.49□□□□□ -0.25
LIG1-213ENST00000596672 EGFRP00533 1210 aa13.49□□□□□ -0.25
LIG1-213ENST00000596672 FLIIQ13045 1269 aa13.49□□□□□ -0.25
LIG1-213ENST00000596672 DOK7Q18PE1 504 aa13.49□□□□□ -0.25
LIG1-213ENST00000596672 TTLL11Q8NHH1 800 aa13.49□□□□□ -0.25
LIG1-213ENST00000596672 TRPM4Q8TD43 1214 aa13.49□□□□□ -0.25
LIG1-213ENST00000596672 CREBZFQ9NS37 354 aa13.49□□□□□ -0.25
LIG1-213ENST00000596672 CLEC11AQ9Y240 323 aa13.49□□□□□ -0.25
LIG1-213ENST00000596672 F6X3S4 739 aa13.48□□□□□ -0.25
LIG1-213ENST00000596672 PSMD14O00487 310 aa13.48□□□□□ -0.25
LIG1-213ENST00000596672 CST9Q5W186 159 aa13.48□□□□□ -0.25
LIG1-213ENST00000596672 CIAPIN1Q6FI81 312 aa13.48□□□□□ -0.25
LIG1-213ENST00000596672 SUPT20HQ8NEM7 779 aa13.48□□□□□ -0.25
LIG1-213ENST00000596672 GREM2Q9H772 168 aa13.48□□□□□ -0.25
LIG1-213ENST00000596672 PODXL2Q9NZ53 605 aa13.48□□□□□ -0.25
LIG1-213ENST00000596672 TRPM7Q96QT4 1865 aa13.47□□□□□ -0.25
LIG1-213ENST00000596672 CTSWP56202 376 aa13.47□□□□□ -0.25
LIG1-213ENST00000596672 GCKRQ14397 625 aa13.47□□□□□ -0.25
LIG1-213ENST00000596672 WASHC4Q2M389 1173 aa13.47□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms