RNA–Protein interactions for RNA: ENST00000596332.1

LIG1-210, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 584 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-210ENST00000596332 SNED1Q8TER0 1413 aa13.37□□□□□ -0.27
LIG1-210ENST00000596332 H0YIN7 160 aa13.36□□□□□ -0.27
LIG1-210ENST00000596332 NPR1P16066 1061 aa13.36□□□□□ -0.27
LIG1-210ENST00000596332 CTSWP56202 376 aa13.36□□□□□ -0.27
LIG1-210ENST00000596332 MASTLQ96GX5 879 aa13.36□□□□□ -0.27
LIG1-210ENST00000596332 CRAMP1Q96RY5 1269 aa13.36□□□□□ -0.27
LIG1-210ENST00000596332 C9orf78Q9NZ63 289 aaPredicted RBP13.36□□□□□ -0.27
LIG1-210ENST00000596332 OLFM4Q6UX06 510 aa13.35□□□□□ -0.27
LIG1-210ENST00000596332 CELF1Q92879 486 aaKnown RBP13.35□□□□□ -0.27
LIG1-210ENST00000596332 GREM2Q9H772 168 aa13.35□□□□□ -0.27
LIG1-210ENST00000596332 PIM2Q9P1W9 311 aa13.35□□□□□ -0.27
LIG1-210ENST00000596332 WWC3Q9ULE0 1092 aa13.35□□□□□ -0.27
LIG1-210ENST00000596332 PDZRN3Q9UPQ7 1066 aa13.35□□□□□ -0.27
LIG1-210ENST00000596332 COG6Q9Y2V7 657 aa13.35□□□□□ -0.27
LIG1-210ENST00000596332 SUPT16HQ9Y5B9 1047 aaKnown RBP13.35□□□□□ -0.27
LIG1-210ENST00000596332 RTL9Q8NET4 1388 aa13.34□□□□□ -0.27
LIG1-210ENST00000596332 RFX5P48382 616 aaPredicted RBP13.34□□□□□ -0.27
LIG1-210ENST00000596332 MVPQ14764 893 aaKnown RBP13.34□□□□□ -0.27
LIG1-210ENST00000596332 LMBR1LQ6UX01 489 aa13.34□□□□□ -0.27
LIG1-210ENST00000596332 CCDC85AQ96PX6 553 aaPredicted RBP13.34□□□□□ -0.27
LIG1-210ENST00000596332 BICC1Q9H694 974 aaKnown RBP13.34□□□□□ -0.27
LIG1-210ENST00000596332 SLX4Q8IY92 1834 aa13.34□□□□□ -0.27
LIG1-210ENST00000596332 TAF1P21675 1872 aa13.33□□□□□ -0.27
LIG1-210ENST00000596332 PRELPP51888 382 aa13.33□□□□□ -0.28
LIG1-210ENST00000596332 PRPF40BQ6NWY9 871 aaKnown RBP13.33□□□□□ -0.28
LIG1-210ENST00000596332 TTLL6Q8N841 843 aa13.33□□□□□ -0.28
LIG1-210ENST00000596332 ZNF622Q969S3 477 aaKnown RBP eCLIP13.33□□□□□ -0.28
LIG1-210ENST00000596332 ZBTB40Q9NUA8 1239 aa13.33□□□□□ -0.28
LIG1-210ENST00000596332 NPHP1O15259 732 aa13.32□□□□□ -0.28
LIG1-210ENST00000596332 FAM161AQ3B820 660 aa13.32□□□□□ -0.28
LIG1-210ENST00000596332 LRRFIP2Q9Y608 721 aaKnown RBP13.32□□□□□ -0.28
LIG1-210ENST00000596332 UTRNP46939 3433 aa13.32□□□□□ -0.28
LIG1-210ENST00000596332 ALDH1B1P30837 517 aa13.31□□□□□ -0.28
LIG1-210ENST00000596332 MTX1Q13505 466 aa13.31□□□□□ -0.28
LIG1-210ENST00000596332 GRAPQ13588 217 aa13.31□□□□□ -0.28
LIG1-210ENST00000596332 DALRD3Q5D0E6 543 aaKnown RBP13.31□□□□□ -0.28
LIG1-210ENST00000596332 ITPRIPQ8IWB1 547 aa13.31□□□□□ -0.28
LIG1-210ENST00000596332 GRAPLQ8TC17 118 aaPredicted RBP13.31□□□□□ -0.28
LIG1-210ENST00000596332 CNKSR1Q969H4 720 aa13.31□□□□□ -0.28
LIG1-210ENST00000596332 RBM17Q96I25 401 aaKnown RBP13.31□□□□□ -0.28
LIG1-210ENST00000596332 WTIPA6NIX2 430 aaPredicted RBP13.3□□□□□ -0.28
LIG1-210ENST00000596332 C21orf2O43822 256 aa13.3□□□□□ -0.28
LIG1-210ENST00000596332 GNAI3P08754 354 aa13.3□□□□□ -0.28
LIG1-210ENST00000596332 UBTFL1P0CB47 393 aaPredicted RBP13.3□□□□□ -0.28
LIG1-210ENST00000596332 ITGA6P23229 1130 aa13.3□□□□□ -0.28
LIG1-210ENST00000596332 RPS8P62241 208 aaKnown RBP13.3□□□□□ -0.28
LIG1-210ENST00000596332 CCDC152Q4G0S7 254 aa13.3□□□□□ -0.28
LIG1-210ENST00000596332 SIRT2Q8IXJ6 389 aa13.3□□□□□ -0.28
LIG1-210ENST00000596332 FTSJ3Q8IY81 847 aaKnown RBP13.3□□□□□ -0.28
LIG1-210ENST00000596332 RPGRQ92834 1020 aaKnown RBP13.3□□□□□ -0.28
LIG1-210ENST00000596332 ZNF594Q96JF6 807 aaPredicted RBP13.3□□□□□ -0.28
LIG1-210ENST00000596332 BCS1LQ9Y276 419 aa13.3□□□□□ -0.28
LIG1-210ENST00000596332 PNMA6EA0A0J9YXQ4 647 aa13.29□□□□□ -0.28
LIG1-210ENST00000596332 BBOX1O75936 387 aa13.29□□□□□ -0.28
LIG1-210ENST00000596332 MS4A1P11836 297 aa13.29□□□□□ -0.28
LIG1-210ENST00000596332 PTPN12Q05209 780 aaKnown RBP13.29□□□□□ -0.28
LIG1-210ENST00000596332 DDX46Q7L014 1031 aaKnown RBP13.29□□□□□ -0.28
LIG1-210ENST00000596332 SP8Q8IXZ3 490 aa13.29□□□□□ -0.28
LIG1-210ENST00000596332 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.29□□□□□ -0.28
LIG1-210ENST00000596332 C1orf115Q9H7X2 142 aa13.29□□□□□ -0.28
LIG1-210ENST00000596332 ATP6V0A2Q9Y487 856 aa13.29□□□□□ -0.28
LIG1-210ENST00000596332 NFKBIEO00221 500 aa13.28□□□□□ -0.28
LIG1-210ENST00000596332 GNAI2P04899 355 aa13.28□□□□□ -0.28
LIG1-210ENST00000596332 HSP90B1P14625 803 aaKnown RBP13.28□□□□□ -0.28
LIG1-210ENST00000596332 KLHDC4Q8TBB5 520 aa13.28□□□□□ -0.28
LIG1-210ENST00000596332 CRBNQ96SW2 442 aa13.28□□□□□ -0.28
LIG1-210ENST00000596332 PUS3Q9BZE2 481 aaKnown RBP13.28□□□□□ -0.28
LIG1-210ENST00000596332 DDX19BQ9UMR2 479 aa13.28□□□□□ -0.28
LIG1-210ENST00000596332 ARFGEF1Q9Y6D6 1849 aa13.27□□□□□ -0.28
LIG1-210ENST00000596332 MYH3P11055 1940 aa13.27□□□□□ -0.28
LIG1-210ENST00000596332 PPEF1O14829 653 aaPredicted RBP13.27□□□□□ -0.29
LIG1-210ENST00000596332 ATP8B2P98198 1209 aa13.27□□□□□ -0.29
LIG1-210ENST00000596332 POLA2Q14181 598 aa13.27□□□□□ -0.29
LIG1-210ENST00000596332 BSDC1Q9NW68 430 aaPredicted RBP13.27□□□□□ -0.29
LIG1-210ENST00000596332 ZNF219Q9P2Y4 722 aaPredicted RBP13.27□□□□□ -0.29
LIG1-210ENST00000596332 MINPP1Q9UNW1 487 aa13.27□□□□□ -0.29
LIG1-210ENST00000596332 RIPOR2Q9Y4F9 1068 aa13.27□□□□□ -0.29
LIG1-210ENST00000596332 LRRC37AA6NMS7 1700 aa13.26□□□□□ -0.29
LIG1-210ENST00000596332 LTBP1Q14766 1721 aa13.26□□□□□ -0.29
LIG1-210ENST00000596332 LRRC24Q50LG9 513 aa13.26□□□□□ -0.29
LIG1-210ENST00000596332 CEP85Q6P2H3 762 aa13.26□□□□□ -0.29
LIG1-210ENST00000596332 ATG9AQ7Z3C6 839 aa13.26□□□□□ -0.29
LIG1-210ENST00000596332 SSH3Q8TE77 659 aa13.26□□□□□ -0.29
LIG1-210ENST00000596332 RTFDC1Q9BY42 306 aaPredicted RBP13.26□□□□□ -0.29
LIG1-210ENST00000596332 DUOX1Q9NRD9 1551 aa13.26□□□□□ -0.29
LIG1-210ENST00000596332 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP13.26□□□□□ -0.29
LIG1-210ENST00000596332 IRS2Q9Y4H2 1338 aa13.25□□□□□ -0.29
LIG1-210ENST00000596332 ANKRD18BA2A2Z9 1011 aa13.25□□□□□ -0.29
LIG1-210ENST00000596332 GPSM2P81274 684 aa13.25□□□□□ -0.29
LIG1-210ENST00000596332 IFIT5Q13325 482 aaKnown RBP13.25□□□□□ -0.29
LIG1-210ENST00000596332 EXOC6Q8TAG9 804 aa13.25□□□□□ -0.29
LIG1-210ENST00000596332 PODXL2Q9NZ53 605 aa13.25□□□□□ -0.29
LIG1-210ENST00000596332 PA2G4Q9UQ80 394 aaKnown RBP13.25□□□□□ -0.29
LIG1-210ENST00000596332 PCDHB15Q9Y5E8 787 aa13.25□□□□□ -0.29
LIG1-210ENST00000596332 SNAP23O00161 211 aa13.24□□□□□ -0.29
LIG1-210ENST00000596332 GPR162Q16538 588 aa13.24□□□□□ -0.29
LIG1-210ENST00000596332 ANKRD18AQ8IVF6 992 aa13.24□□□□□ -0.29
LIG1-210ENST00000596332 COPRSQ9NQ92 184 aa13.24□□□□□ -0.29
LIG1-210ENST00000596332 POLLQ9UGP5 575 aa13.24□□□□□ -0.29
LIG1-210ENST00000596332 CACNA1SQ13698 1873 aa13.24□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms