RNA–Protein interactions for RNA: ENST00000595631.5

SHKBP1-207, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 4

Gene SHKBP1, Length 552 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-207ENST00000595631 BRPF1P55201 1214 aaPredicted RBP17.49■□□□□ 0.39
SHKBP1-207ENST00000595631 SF3B3Q15393 1217 aaKnown RBP17.49■□□□□ 0.39
SHKBP1-207ENST00000595631 SRCIN1Q9C0H9 1055 aa17.49■□□□□ 0.39
SHKBP1-207ENST00000595631 TNNQ9UQP3 1299 aa17.49■□□□□ 0.39
SHKBP1-207ENST00000595631 SNED1Q8TER0 1413 aa17.48■□□□□ 0.39
SHKBP1-207ENST00000595631 PPEF1O14829 653 aaPredicted RBP17.48■□□□□ 0.39
SHKBP1-207ENST00000595631 DDX46Q7L014 1031 aaKnown RBP17.48■□□□□ 0.39
SHKBP1-207ENST00000595631 ALDH1L1O75891 902 aa17.47■□□□□ 0.39
SHKBP1-207ENST00000595631 CTSWP56202 376 aa17.47■□□□□ 0.39
SHKBP1-207ENST00000595631 CELF1Q92879 486 aaKnown RBP17.47■□□□□ 0.39
SHKBP1-207ENST00000595631 SEC31BQ9NQW1 1179 aa17.47■□□□□ 0.39
SHKBP1-207ENST00000595631 A0A1B0GUL6 1792 aa17.47■□□□□ 0.39
SHKBP1-207ENST00000595631 GRM8O00222 908 aa17.46■□□□□ 0.39
SHKBP1-207ENST00000595631 GRAPQ13588 217 aa17.46■□□□□ 0.39
SHKBP1-207ENST00000595631 CCDC93Q567U6 631 aa17.46■□□□□ 0.39
SHKBP1-207ENST00000595631 GRAPLQ8TC17 118 aaPredicted RBP17.46■□□□□ 0.39
SHKBP1-207ENST00000595631 FRAT1Q92837 279 aaPredicted RBP17.46■□□□□ 0.39
SHKBP1-207ENST00000595631 LTBP1Q14766 1721 aa17.46■□□□□ 0.39
SHKBP1-207ENST00000595631 KIF16BQ96L93 1317 aa17.46■□□□□ 0.38
SHKBP1-207ENST00000595631 C9orf131Q5VYM1 1079 aa17.45■□□□□ 0.38
SHKBP1-207ENST00000595631 TTLL11Q8NHH1 800 aa17.45■□□□□ 0.38
SHKBP1-207ENST00000595631 C9orf78Q9NZ63 289 aaPredicted RBP17.45■□□□□ 0.38
SHKBP1-207ENST00000595631 NBPF7P0C2Y1 421 aaPredicted RBP17.44■□□□□ 0.38
SHKBP1-207ENST00000595631 HSP90B1P14625 803 aaKnown RBP17.44■□□□□ 0.38
SHKBP1-207ENST00000595631 CCDC152Q4G0S7 254 aa17.44■□□□□ 0.38
SHKBP1-207ENST00000595631 EPHA10Q5JZY3 1008 aa17.44■□□□□ 0.38
SHKBP1-207ENST00000595631 SOGA3Q5TF21 947 aa17.44■□□□□ 0.38
SHKBP1-207ENST00000595631 PLA2G12BQ9BX93 195 aa17.44■□□□□ 0.38
SHKBP1-207ENST00000595631 API5Q9BZZ5 524 aaKnown RBP17.44■□□□□ 0.38
SHKBP1-207ENST00000595631 TAOK3Q9H2K8 898 aa17.44■□□□□ 0.38
SHKBP1-207ENST00000595631 GREM2Q9H772 168 aa17.44■□□□□ 0.38
SHKBP1-207ENST00000595631 RNF181Q9P0P0 153 aa17.44■□□□□ 0.38
SHKBP1-207ENST00000595631 DUOX1Q9NRD9 1551 aa17.44■□□□□ 0.38
SHKBP1-207ENST00000595631 TRIM27P14373 513 aa17.43■□□□□ 0.38
SHKBP1-207ENST00000595631 FOXO4P98177 505 aa17.43■□□□□ 0.38
SHKBP1-207ENST00000595631 ATP6V0A2Q9Y487 856 aa17.43■□□□□ 0.38
SHKBP1-207ENST00000595631 BBOX1O75936 387 aa17.42■□□□□ 0.38
SHKBP1-207ENST00000595631 LMNB1P20700 586 aa17.42■□□□□ 0.38
SHKBP1-207ENST00000595631 FAM161AQ3B820 660 aa17.42■□□□□ 0.38
SHKBP1-207ENST00000595631 SUCLG2Q96I99 432 aa17.42■□□□□ 0.38
SHKBP1-207ENST00000595631 LTBP3Q9NS15 1303 aa17.42■□□□□ 0.38
SHKBP1-207ENST00000595631 COL4A5P29400 1685 aa17.42■□□□□ 0.38
SHKBP1-207ENST00000595631 FKBP4Q02790 459 aaKnown RBP eCLIP17.41■□□□□ 0.38
SHKBP1-207ENST00000595631 ATF7IPQ6VMQ6 1270 aa17.41■□□□□ 0.38
SHKBP1-207ENST00000595631 SP8Q8IXZ3 490 aa17.41■□□□□ 0.38
SHKBP1-207ENST00000595631 RTKN2Q8IZC4 609 aa17.41■□□□□ 0.38
SHKBP1-207ENST00000595631 ARHGAP45Q92619 1136 aa17.41■□□□□ 0.38
SHKBP1-207ENST00000595631 CLUAP1Q96AJ1 413 aa17.41■□□□□ 0.38
SHKBP1-207ENST00000595631 KAZALD1Q96I82 304 aa17.41■□□□□ 0.38
SHKBP1-207ENST00000595631 USP44Q9H0E7 712 aa17.41■□□□□ 0.38
SHKBP1-207ENST00000595631 ZNF277Q9NRM2 450 aaPredicted RBP17.41■□□□□ 0.38
SHKBP1-207ENST00000595631 UTYO14607 1347 aa17.41■□□□□ 0.38
SHKBP1-207ENST00000595631 RTL9Q8NET4 1388 aa17.4■□□□□ 0.38
SHKBP1-207ENST00000595631 CSF1RP07333 972 aa17.4■□□□□ 0.38
SHKBP1-207ENST00000595631 CCT4P50991 539 aaKnown RBP17.4■□□□□ 0.38
SHKBP1-207ENST00000595631 RPS8P62241 208 aaKnown RBP17.4■□□□□ 0.38
SHKBP1-207ENST00000595631 CC2D2BQ6DHV5 1058 aa17.4■□□□□ 0.38
SHKBP1-207ENST00000595631 IPO8O15397 1037 aaKnown RBP17.39■□□□□ 0.37
SHKBP1-207ENST00000595631 ITGA6P23229 1130 aa17.39■□□□□ 0.37
SHKBP1-207ENST00000595631 ZKSCAN2Q63HK3 967 aa17.39■□□□□ 0.37
SHKBP1-207ENST00000595631 LMBR1LQ6UX01 489 aa17.39■□□□□ 0.37
SHKBP1-207ENST00000595631 ZNF526Q8TF50 670 aaPredicted RBP17.39■□□□□ 0.37
SHKBP1-207ENST00000595631 CHMP3Q9Y3E7 222 aa17.39■□□□□ 0.37
SHKBP1-207ENST00000595631 ANKRD18AQ8IVF6 992 aa17.38■□□□□ 0.37
SHKBP1-207ENST00000595631 ZNF784Q8NCA9 323 aaPredicted RBP17.38■□□□□ 0.37
SHKBP1-207ENST00000595631 IARSP41252 1262 aaKnown RBP17.37■□□□□ 0.37
SHKBP1-207ENST00000595631 GPSM2P81274 684 aa17.37■□□□□ 0.37
SHKBP1-207ENST00000595631 INTS3Q68E01 1043 aaKnown RBP17.37■□□□□ 0.37
SHKBP1-207ENST00000595631 TMC4Q7Z404 712 aa17.37■□□□□ 0.37
SHKBP1-207ENST00000595631 MPNDQ8N594 471 aa17.37■□□□□ 0.37
SHKBP1-207ENST00000595631 CDC5LQ99459 802 aaKnown RBP17.37■□□□□ 0.37
SHKBP1-207ENST00000595631 PSMD1Q99460 953 aa17.37■□□□□ 0.37
SHKBP1-207ENST00000595631 MEIS3Q99687 375 aa17.37■□□□□ 0.37
SHKBP1-207ENST00000595631 TMX4Q9H1E5 349 aaPredicted RBP17.37■□□□□ 0.37
SHKBP1-207ENST00000595631 BICC1Q9H694 974 aaKnown RBP17.37■□□□□ 0.37
SHKBP1-207ENST00000595631 RCAN3Q9UKA8 241 aa17.37■□□□□ 0.37
SHKBP1-207ENST00000595631 RLBP1P12271 317 aa17.36■□□□□ 0.37
SHKBP1-207ENST00000595631 DPP8Q6V1X1 898 aaPredicted RBP17.36■□□□□ 0.37
SHKBP1-207ENST00000595631 TMEM57Q8N5G2 664 aa17.36■□□□□ 0.37
SHKBP1-207ENST00000595631 ANKRD44Q8N8A2 993 aa17.36■□□□□ 0.37
SHKBP1-207ENST00000595631 NSFL1CQ9UNZ2 370 aaKnown RBP17.36■□□□□ 0.37
SHKBP1-207ENST00000595631 ZNF594Q96JF6 807 aaPredicted RBP17.35■□□□□ 0.37
SHKBP1-207ENST00000595631 GPR101Q96P66 508 aaPredicted RBP17.35■□□□□ 0.37
SHKBP1-207ENST00000595631 ANKRD18BA2A2Z9 1011 aa17.34■□□□□ 0.37
SHKBP1-207ENST00000595631 UBTFL1P0CB47 393 aaPredicted RBP17.34■□□□□ 0.37
SHKBP1-207ENST00000595631 AOC3Q16853 763 aa17.34■□□□□ 0.37
SHKBP1-207ENST00000595631 GRIPAP1Q4V328 841 aa17.34■□□□□ 0.37
SHKBP1-207ENST00000595631 RTFDC1Q9BY42 306 aaPredicted RBP17.34■□□□□ 0.37
SHKBP1-207ENST00000595631 WTIPA6NIX2 430 aaPredicted RBP17.33■□□□□ 0.36
SHKBP1-207ENST00000595631 PPIP5K2O43314 1243 aa17.33■□□□□ 0.36
SHKBP1-207ENST00000595631 PLIN1O60240 522 aa17.33■□□□□ 0.36
SHKBP1-207ENST00000595631 IGHMBP2P38935 993 aaKnown RBP17.33■□□□□ 0.36
SHKBP1-207ENST00000595631 IFIT5Q13325 482 aaKnown RBP17.33■□□□□ 0.36
SHKBP1-207ENST00000595631 RABL6Q3YEC7 729 aaPredicted RBP17.33■□□□□ 0.36
SHKBP1-207ENST00000595631 DZIP1LQ8IYY4 767 aaKnown RBP17.33■□□□□ 0.36
SHKBP1-207ENST00000595631 PANK1Q8TE04 598 aa17.33■□□□□ 0.36
SHKBP1-207ENST00000595631 POLLQ9UGP5 575 aa17.33■□□□□ 0.36
SHKBP1-207ENST00000595631 LRRFIP2Q9Y608 721 aaKnown RBP17.33■□□□□ 0.36
SHKBP1-207ENST00000595631 SCN9AQ15858 1988 aa17.33■□□□□ 0.36
SHKBP1-207ENST00000595631 FTSJ3Q8IY81 847 aaKnown RBP17.32■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms