RNA–Protein interactions for RNA: ENST00000594806.5

TRIM28-204, Transcript of tripartite motif containing 28, humanhuman

TSL 5

Gene TRIM28, Length 861 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-204ENST00000594806 FER1L6Q2WGJ9 1857 aa32.58■■■□□ 2.81
TRIM28-204ENST00000594806 BCAR3O75815 825 aa32.57■■■□□ 2.8
TRIM28-204ENST00000594806 CCT4P50991 539 aaKnown RBP32.57■■■□□ 2.8
TRIM28-204ENST00000594806 GRAPQ13588 217 aa32.57■■■□□ 2.8
TRIM28-204ENST00000594806 RTKN2Q8IZC4 609 aa32.57■■■□□ 2.8
TRIM28-204ENST00000594806 GRAPLQ8TC17 118 aaPredicted RBP32.57■■■□□ 2.8
TRIM28-204ENST00000594806 TMX4Q9H1E5 349 aaPredicted RBP32.57■■■□□ 2.8
TRIM28-204ENST00000594806 PPEF1O14829 653 aaPredicted RBP32.56■■■□□ 2.8
TRIM28-204ENST00000594806 CTSWP56202 376 aa32.56■■■□□ 2.8
TRIM28-204ENST00000594806 ZNF219Q9P2Y4 722 aaPredicted RBP32.56■■■□□ 2.8
TRIM28-204ENST00000594806 LTBP3Q9NS15 1303 aa32.55■■■□□ 2.8
TRIM28-204ENST00000594806 UTRNP46939 3433 aa32.54■■■□□ 2.8
TRIM28-204ENST00000594806 UTYO14607 1347 aa32.53■■■□□ 2.8
TRIM28-204ENST00000594806 SBF1O95248 1867 aa32.53■■■□□ 2.8
TRIM28-204ENST00000594806 YY1P25490 414 aa32.53■■■□□ 2.8
TRIM28-204ENST00000594806 TTLL11Q8NHH1 800 aa32.53■■■□□ 2.8
TRIM28-204ENST00000594806 ATP6V0A2Q9Y487 856 aa32.53■■■□□ 2.8
TRIM28-204ENST00000594806 RTL9Q8NET4 1388 aa32.53■■■□□ 2.8
TRIM28-204ENST00000594806 ATF7IPQ6VMQ6 1270 aa32.52■■■□□ 2.8
TRIM28-204ENST00000594806 SP8Q8IXZ3 490 aa32.52■■■□□ 2.8
TRIM28-204ENST00000594806 TAOK3Q9H2K8 898 aa32.52■■■□□ 2.8
TRIM28-204ENST00000594806 ZKSCAN2Q63HK3 967 aa32.51■■■□□ 2.79
TRIM28-204ENST00000594806 NFKBIEO00221 500 aa32.5■■■□□ 2.79
TRIM28-204ENST00000594806 RPS8P62241 208 aaKnown RBP32.5■■■□□ 2.79
TRIM28-204ENST00000594806 FRAT1Q92837 279 aaPredicted RBP32.5■■■□□ 2.79
TRIM28-204ENST00000594806 TAF1P21675 1872 aa32.5■■■□□ 2.79
TRIM28-204ENST00000594806 CSF1RP07333 972 aa32.49■■■□□ 2.79
TRIM28-204ENST00000594806 LMNB1P20700 586 aa32.49■■■□□ 2.79
TRIM28-204ENST00000594806 CDC5LQ99459 802 aaKnown RBP32.49■■■□□ 2.79
TRIM28-204ENST00000594806 TRIM27P14373 513 aa32.48■■■□□ 2.79
TRIM28-204ENST00000594806 CELF1Q92879 486 aaKnown RBP32.48■■■□□ 2.79
TRIM28-204ENST00000594806 FKBP4Q02790 459 aaKnown RBP eCLIP32.47■■■□□ 2.79
TRIM28-204ENST00000594806 RASSF7Q02833 373 aa32.47■■■□□ 2.79
TRIM28-204ENST00000594806 CCDC88AQ3V6T2 1871 aa32.47■■■□□ 2.79
TRIM28-204ENST00000594806 INTS3Q68E01 1043 aaKnown RBP32.47■■■□□ 2.79
TRIM28-204ENST00000594806 PSMD1Q99460 953 aa32.47■■■□□ 2.79
TRIM28-204ENST00000594806 USP44Q9H0E7 712 aa32.46■■■□□ 2.79
TRIM28-204ENST00000594806 SEC31BQ9NQW1 1179 aa32.46■■■□□ 2.79
TRIM28-204ENST00000594806 HDAC5Q9UQL6 1122 aa32.46■■■□□ 2.79
TRIM28-204ENST00000594806 SNED1Q8TER0 1413 aa32.45■■■□□ 2.79
TRIM28-204ENST00000594806 NBPF7P0C2Y1 421 aaPredicted RBP32.45■■■□□ 2.79
TRIM28-204ENST00000594806 FOXO4P98177 505 aa32.45■■■□□ 2.79
TRIM28-204ENST00000594806 C9orf131Q5VYM1 1079 aa32.45■■■□□ 2.79
TRIM28-204ENST00000594806 YTHDC1Q96MU7 727 aaKnown RBP32.45■■■□□ 2.79
TRIM28-204ENST00000594806 OLFM4Q6UX06 510 aa32.44■■■□□ 2.78
TRIM28-204ENST00000594806 ANKRD18AQ8IVF6 992 aa32.44■■■□□ 2.78
TRIM28-204ENST00000594806 GREM2Q9H772 168 aa32.44■■■□□ 2.78
TRIM28-204ENST00000594806 RCAN3Q9UKA8 241 aa32.44■■■□□ 2.78
TRIM28-204ENST00000594806 ZC3H4Q9UPT8 1303 aaKnown RBP32.44■■■□□ 2.78
TRIM28-204ENST00000594806 CCDC85AQ96PX6 553 aaPredicted RBP32.43■■■□□ 2.78
TRIM28-204ENST00000594806 RNF181Q9P0P0 153 aa32.43■■■□□ 2.78
TRIM28-204ENST00000594806 DICER1Q9UPY3 1922 aaKnown RBP32.43■■■□□ 2.78
TRIM28-204ENST00000594806 LRRC37AA6NMS7 1700 aa32.42■■■□□ 2.78
TRIM28-204ENST00000594806 SUPT20HQ8NEM7 779 aa32.41■■■□□ 2.78
TRIM28-204ENST00000594806 VPS33BQ9H267 617 aa32.41■■■□□ 2.78
TRIM28-204ENST00000594806 ITGA6P23229 1130 aa32.4■■■□□ 2.78
TRIM28-204ENST00000594806 MPNDQ8N594 471 aa32.4■■■□□ 2.78
TRIM28-204ENST00000594806 SUCLG2Q96I99 432 aa32.4■■■□□ 2.78
TRIM28-204ENST00000594806 ANKRD18BA2A2Z9 1011 aa32.39■■■□□ 2.78
TRIM28-204ENST00000594806 MS4A1P11836 297 aa32.39■■■□□ 2.78
TRIM28-204ENST00000594806 FAM161AQ3B820 660 aa32.39■■■□□ 2.78
TRIM28-204ENST00000594806 LMBR1LQ6UX01 489 aa32.39■■■□□ 2.78
TRIM28-204ENST00000594806 RTFDC1Q9BY42 306 aaPredicted RBP32.39■■■□□ 2.78
TRIM28-204ENST00000594806 BSDC1Q9NW68 430 aaPredicted RBP32.39■■■□□ 2.78
TRIM28-204ENST00000594806 IGHMBP2P38935 993 aaKnown RBP32.38■■■□□ 2.77
TRIM28-204ENST00000594806 IFIT5Q13325 482 aaKnown RBP32.38■■■□□ 2.77
TRIM28-204ENST00000594806 EPHA10Q5JZY3 1008 aa32.38■■■□□ 2.77
TRIM28-204ENST00000594806 DPP8Q6V1X1 898 aaPredicted RBP32.38■■■□□ 2.77
TRIM28-204ENST00000594806 UBTFL1P0CB47 393 aaPredicted RBP32.37■■■□□ 2.77
TRIM28-204ENST00000594806 PRELPP51888 382 aa32.37■■■□□ 2.77
TRIM28-204ENST00000594806 RABL6Q3YEC7 729 aaPredicted RBP32.37■■■□□ 2.77
TRIM28-204ENST00000594806 FTSJ3Q8IY81 847 aaKnown RBP32.37■■■□□ 2.77
TRIM28-204ENST00000594806 KAZALD1Q96I82 304 aa32.37■■■□□ 2.77
TRIM28-204ENST00000594806 CCDC57Q2TAC2 916 aa32.36■■■□□ 2.77
TRIM28-204ENST00000594806 DZIP1LQ8IYY4 767 aaKnown RBP32.36■■■□□ 2.77
TRIM28-204ENST00000594806 CLUAP1Q96AJ1 413 aa32.36■■■□□ 2.77
TRIM28-204ENST00000594806 CHMP3Q9Y3E7 222 aa32.36■■■□□ 2.77
TRIM28-204ENST00000594806 COL4A1P02462 1669 aa32.35■■■□□ 2.77
TRIM28-204ENST00000594806 GNAI3P08754 354 aa32.35■■■□□ 2.77
TRIM28-204ENST00000594806 IARSP41252 1262 aaKnown RBP32.35■■■□□ 2.77
TRIM28-204ENST00000594806 MPHOSPH8Q99549 860 aa32.34■■■□□ 2.77
TRIM28-204ENST00000594806 BICC1Q9H694 974 aaKnown RBP32.34■■■□□ 2.77
TRIM28-204ENST00000594806 ZNF277Q9NRM2 450 aaPredicted RBP32.34■■■□□ 2.77
TRIM28-204ENST00000594806 PODXL2Q9NZ53 605 aa32.34■■■□□ 2.77
TRIM28-204ENST00000594806 NSFL1CQ9UNZ2 370 aaKnown RBP32.33■■■□□ 2.77
TRIM28-204ENST00000594806 TNNQ9UQP3 1299 aa32.32■■■□□ 2.76
TRIM28-204ENST00000594806 TMEM57Q8N5G2 664 aa32.31■■■□□ 2.76
TRIM28-204ENST00000594806 GPSM2P81274 684 aa32.3■■■□□ 2.76
TRIM28-204ENST00000594806 SLC51AQ86UW1 340 aa32.3■■■□□ 2.76
TRIM28-204ENST00000594806 TIAM2Q8IVF5 1701 aa32.3■■■□□ 2.76
TRIM28-204ENST00000594806 ANKRD44Q8N8A2 993 aa32.3■■■□□ 2.76
TRIM28-204ENST00000594806 GOLGA6L2Q8N9W4 650 aaPredicted RBP32.3■■■□□ 2.76
TRIM28-204ENST00000594806 MEIS3Q99687 375 aa32.3■■■□□ 2.76
TRIM28-204ENST00000594806 SPEF2Q9C093 1822 aa32.3■■■□□ 2.76
TRIM28-204ENST00000594806 TAF7LQ5H9L4 462 aa32.29■■■□□ 2.76
TRIM28-204ENST00000594806 ZNF784Q8NCA9 323 aaPredicted RBP32.29■■■□□ 2.76
TRIM28-204ENST00000594806 JDP2Q8WYK2 163 aa32.29■■■□□ 2.76
TRIM28-204ENST00000594806 ANKIB1Q9P2G1 1089 aa32.29■■■□□ 2.76
TRIM28-204ENST00000594806 MINPP1Q9UNW1 487 aa32.29■■■□□ 2.76
TRIM28-204ENST00000594806 XDHP47989 1333 aa32.28■■■□□ 2.76
Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms