RNA–Protein interactions for RNA: ENST00000594090.5

VRK3-206, Transcript of vaccinia related kinase 3, humanhuman

TSL 1 (best)

Gene VRK3, Length 1,448 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-206ENST00000594090 COL4A1P02462 1669 aa18.51■□□□□ 0.55
VRK3-206ENST00000594090 LRRC37AA6NMS7 1700 aa18.5■□□□□ 0.55
VRK3-206ENST00000594090 H7C1W4 665 aa18.5■□□□□ 0.55
VRK3-206ENST00000594090 GRAPQ13588 217 aa18.5■□□□□ 0.55
VRK3-206ENST00000594090 SLC51AQ86UW1 340 aa18.5■□□□□ 0.55
VRK3-206ENST00000594090 GRAPLQ8TC17 118 aaPredicted RBP18.5■□□□□ 0.55
VRK3-206ENST00000594090 DICER1Q9UPY3 1922 aaKnown RBP18.5■□□□□ 0.55
VRK3-206ENST00000594090 RARSP54136 660 aaKnown RBP18.49■□□□□ 0.55
VRK3-206ENST00000594090 CASP7P55210 303 aa18.49■□□□□ 0.55
VRK3-206ENST00000594090 CC2D2BQ6DHV5 1058 aa18.49■□□□□ 0.55
VRK3-206ENST00000594090 SLC4A10Q6U841 1118 aa18.49■□□□□ 0.55
VRK3-206ENST00000594090 RTKN2Q8IZC4 609 aa18.49■□□□□ 0.55
VRK3-206ENST00000594090 BBOX1O75936 387 aa18.49■□□□□ 0.55
VRK3-206ENST00000594090 BRPF1P55201 1214 aaPredicted RBP18.49■□□□□ 0.55
VRK3-206ENST00000594090 CTSWP56202 376 aa18.49■□□□□ 0.55
VRK3-206ENST00000594090 FKBP4Q02790 459 aaKnown RBP eCLIP18.49■□□□□ 0.55
VRK3-206ENST00000594090 ATP6V0A2Q9Y487 856 aa18.49■□□□□ 0.55
VRK3-206ENST00000594090 ALDH1L1O75891 902 aa18.48■□□□□ 0.55
VRK3-206ENST00000594090 CCDC152Q4G0S7 254 aa18.48■□□□□ 0.55
VRK3-206ENST00000594090 ZC3H4Q9UPT8 1303 aaKnown RBP18.47■□□□□ 0.55
VRK3-206ENST00000594090 GRIPAP1Q4V328 841 aa18.47■□□□□ 0.55
VRK3-206ENST00000594090 CELF1Q92879 486 aaKnown RBP18.47■□□□□ 0.55
VRK3-206ENST00000594090 PLA2G12BQ9BX93 195 aa18.47■□□□□ 0.55
VRK3-206ENST00000594090 SRCIN1Q9C0H9 1055 aa18.47■□□□□ 0.55
VRK3-206ENST00000594090 TMC4Q7Z404 712 aa18.46■□□□□ 0.55
VRK3-206ENST00000594090 PSMD1Q99460 953 aa18.46■□□□□ 0.55
VRK3-206ENST00000594090 KIF16BQ96L93 1317 aa18.45■□□□□ 0.54
VRK3-206ENST00000594090 GRM8O00222 908 aa18.45■□□□□ 0.54
VRK3-206ENST00000594090 SP8Q8IXZ3 490 aa18.45■□□□□ 0.54
VRK3-206ENST00000594090 TTLL11Q8NHH1 800 aa18.45■□□□□ 0.54
VRK3-206ENST00000594090 ZNF526Q8TF50 670 aaPredicted RBP18.45■□□□□ 0.54
VRK3-206ENST00000594090 CCDC85AQ96PX6 553 aaPredicted RBP18.45■□□□□ 0.54
VRK3-206ENST00000594090 TMX4Q9H1E5 349 aaPredicted RBP18.45■□□□□ 0.54
VRK3-206ENST00000594090 SEC31BQ9NQW1 1179 aa18.45■□□□□ 0.54
VRK3-206ENST00000594090 ZNF277Q9NRM2 450 aaPredicted RBP18.45■□□□□ 0.54
VRK3-206ENST00000594090 RTL9Q8NET4 1388 aa18.44■□□□□ 0.54
VRK3-206ENST00000594090 NOB1Q9ULX3 412 aaKnown RBP18.44■□□□□ 0.54
VRK3-206ENST00000594090 DUOX1Q9NRD9 1551 aa18.43■□□□□ 0.54
VRK3-206ENST00000594090 GREM2Q9H772 168 aa18.43■□□□□ 0.54
VRK3-206ENST00000594090 C9orf78Q9NZ63 289 aaPredicted RBP18.43■□□□□ 0.54
VRK3-206ENST00000594090 LTBP1Q14766 1721 aa18.42■□□□□ 0.54
VRK3-206ENST00000594090 IARSP41252 1262 aaKnown RBP18.42■□□□□ 0.54
VRK3-206ENST00000594090 RPS8P62241 208 aaKnown RBP18.42■□□□□ 0.54
VRK3-206ENST00000594090 GPBP1L1Q9HC44 474 aaPredicted RBP18.42■□□□□ 0.54
VRK3-206ENST00000594090 SPEF2Q9C093 1822 aa18.42■□□□□ 0.54
VRK3-206ENST00000594090 API5Q9BZZ5 524 aaKnown RBP18.41■□□□□ 0.54
VRK3-206ENST00000594090 COL4A5P29400 1685 aa18.41■□□□□ 0.54
VRK3-206ENST00000594090 UTYO14607 1347 aa18.41■□□□□ 0.54
VRK3-206ENST00000594090 BCAR3O75815 825 aa18.4■□□□□ 0.54
VRK3-206ENST00000594090 CSF1RP07333 972 aa18.4■□□□□ 0.54
VRK3-206ENST00000594090 FAM161AQ3B820 660 aa18.4■□□□□ 0.54
VRK3-206ENST00000594090 DPP8Q6V1X1 898 aaPredicted RBP18.4■□□□□ 0.54
VRK3-206ENST00000594090 ANKRD18AQ8IVF6 992 aa18.4■□□□□ 0.54
VRK3-206ENST00000594090 MPNDQ8N594 471 aa18.4■□□□□ 0.54
VRK3-206ENST00000594090 CDC5LQ99459 802 aaKnown RBP18.4■□□□□ 0.54
VRK3-206ENST00000594090 RTFDC1Q9BY42 306 aaPredicted RBP18.4■□□□□ 0.54
VRK3-206ENST00000594090 FOXO4P98177 505 aa18.4■□□□□ 0.54
VRK3-206ENST00000594090 ARHGAP45Q92619 1136 aa18.4■□□□□ 0.54
VRK3-206ENST00000594090 KDM2BQ8NHM5 1336 aa18.39■□□□□ 0.53
VRK3-206ENST00000594090 NBPF7P0C2Y1 421 aaPredicted RBP18.39■□□□□ 0.53
VRK3-206ENST00000594090 SUPT20HQ8NEM7 779 aa18.39■□□□□ 0.53
VRK3-206ENST00000594090 ITGA6P23229 1130 aa18.38■□□□□ 0.53
VRK3-206ENST00000594090 CCT4P50991 539 aaKnown RBP18.38■□□□□ 0.53
VRK3-206ENST00000594090 EPHA10Q5JZY3 1008 aa18.38■□□□□ 0.53
VRK3-206ENST00000594090 SUCLG2Q96I99 432 aa18.38■□□□□ 0.53
VRK3-206ENST00000594090 GLTPD2A6NH11 291 aa18.37■□□□□ 0.53
VRK3-206ENST00000594090 PPIP5K2O43314 1243 aa18.37■□□□□ 0.53
VRK3-206ENST00000594090 GPSM2P81274 684 aa18.37■□□□□ 0.53
VRK3-206ENST00000594090 VPS33BQ9H267 617 aa18.37■□□□□ 0.53
VRK3-206ENST00000594090 NSFL1CQ9UNZ2 370 aaKnown RBP18.37■□□□□ 0.53
VRK3-206ENST00000594090 IPO8O15397 1037 aaKnown RBP18.36■□□□□ 0.53
VRK3-206ENST00000594090 TRIM27P14373 513 aa18.36■□□□□ 0.53
VRK3-206ENST00000594090 AOC3Q16853 763 aa18.36■□□□□ 0.53
VRK3-206ENST00000594090 LMBR1LQ6UX01 489 aa18.36■□□□□ 0.53
VRK3-206ENST00000594090 LARGE2Q8N3Y3 721 aa18.36■□□□□ 0.53
VRK3-206ENST00000594090 FRAT1Q92837 279 aaPredicted RBP18.36■□□□□ 0.53
VRK3-206ENST00000594090 KAZALD1Q96I82 304 aa18.36■□□□□ 0.53
VRK3-206ENST00000594090 USP44Q9H0E7 712 aa18.36■□□□□ 0.53
VRK3-206ENST00000594090 CHMP3Q9Y3E7 222 aa18.36■□□□□ 0.53
VRK3-206ENST00000594090 WDR90Q96KV7 1748 aa18.36■□□□□ 0.53
VRK3-206ENST00000594090 DPY19L2Q6NUT2 758 aa18.35■□□□□ 0.53
VRK3-206ENST00000594090 ATF7IPQ6VMQ6 1270 aa18.35■□□□□ 0.53
VRK3-206ENST00000594090 JDP2Q8WYK2 163 aa18.35■□□□□ 0.53
VRK3-206ENST00000594090 NMRK2Q9NPI5 230 aa18.35■□□□□ 0.53
VRK3-206ENST00000594090 BSDC1Q9NW68 430 aaPredicted RBP18.35■□□□□ 0.53
VRK3-206ENST00000594090 PODXL2Q9NZ53 605 aa18.35■□□□□ 0.53
VRK3-206ENST00000594090 ZNF541Q9H0D2 1346 aa18.35■□□□□ 0.53
VRK3-206ENST00000594090 ANKRD18BA2A2Z9 1011 aa18.34■□□□□ 0.53
VRK3-206ENST00000594090 FZD9O00144 591 aa18.34■□□□□ 0.53
VRK3-206ENST00000594090 IGHMBP2P38935 993 aaKnown RBP18.34■□□□□ 0.53
VRK3-206ENST00000594090 KIAA2012Q0VF49 1180 aa18.34■□□□□ 0.53
VRK3-206ENST00000594090 IFIT5Q13325 482 aaKnown RBP18.34■□□□□ 0.53
VRK3-206ENST00000594090 TNNQ9UQP3 1299 aa18.34■□□□□ 0.53
VRK3-206ENST00000594090 KIF3CO14782 793 aa18.33■□□□□ 0.53
VRK3-206ENST00000594090 INTS3Q68E01 1043 aaKnown RBP18.33■□□□□ 0.53
VRK3-206ENST00000594090 NIM1KQ8IY84 436 aa18.33■□□□□ 0.53
VRK3-206ENST00000594090 BICC1Q9H694 974 aaKnown RBP18.33■□□□□ 0.53
VRK3-206ENST00000594090 ANKIB1Q9P2G1 1089 aa18.33■□□□□ 0.53
VRK3-206ENST00000594090 POLLQ9UGP5 575 aa18.33■□□□□ 0.53
VRK3-206ENST00000594090 A0A1B0GUL6 1792 aa18.33■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms