RNA–Protein interactions for RNA: ENST00000593919.5

VRK3-205, Transcript of vaccinia related kinase 3, humanhuman

TSL 1 (best) BASIC

Gene VRK3, Length 1,979 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-205ENST00000593919 SALL3Q9BXA9 1300 aa16.28■□□□□ 0.2
VRK3-205ENST00000593919 BICDL1Q6ZP65 573 aa16.27■□□□□ 0.2
VRK3-205ENST00000593919 PDE8AO60658 829 aa16.27■□□□□ 0.19
VRK3-205ENST00000593919 SEC24BO95487 1268 aa16.27■□□□□ 0.19
VRK3-205ENST00000593919 CSF1RP07333 972 aa16.27■□□□□ 0.19
VRK3-205ENST00000593919 SSFA2P28290 1259 aa16.27■□□□□ 0.19
VRK3-205ENST00000593919 CTSWP56202 376 aa16.27■□□□□ 0.19
VRK3-205ENST00000593919 CCDC85AQ96PX6 553 aaPredicted RBP16.27■□□□□ 0.19
VRK3-205ENST00000593919 SASH1O94885 1247 aa16.26■□□□□ 0.19
VRK3-205ENST00000593919 HMGB2P26583 209 aaKnown RBP16.26■□□□□ 0.19
VRK3-205ENST00000593919 NUTM1Q86Y26 1132 aa16.26■□□□□ 0.19
VRK3-205ENST00000593919 TTLL11Q8NHH1 800 aa16.26■□□□□ 0.19
VRK3-205ENST00000593919 HCLS1P14317 486 aaPredicted RBP16.26■□□□□ 0.19
VRK3-205ENST00000593919 ZNF827Q17R98 1081 aa16.26■□□□□ 0.19
VRK3-205ENST00000593919 BMP2KLQ5H9B9 411 aa16.26■□□□□ 0.19
VRK3-205ENST00000593919 SLC4A3P48751 1232 aa16.25■□□□□ 0.19
VRK3-205ENST00000593919 PDE1AP54750 535 aa16.25■□□□□ 0.19
VRK3-205ENST00000593919 CCDC57Q2TAC2 916 aa16.25■□□□□ 0.19
VRK3-205ENST00000593919 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP16.25■□□□□ 0.19
VRK3-205ENST00000593919 GSPT1P15170 499 aaKnown RBP16.24■□□□□ 0.19
VRK3-205ENST00000593919 MX1P20591 662 aa16.24■□□□□ 0.19
VRK3-205ENST00000593919 ILDR1Q86SU0 546 aaPredicted RBP16.24■□□□□ 0.19
VRK3-205ENST00000593919 CLASRPQ8N2M8 674 aaKnown RBP16.24■□□□□ 0.19
VRK3-205ENST00000593919 ZNF594Q96JF6 807 aaPredicted RBP16.24■□□□□ 0.19
VRK3-205ENST00000593919 SETDB2Q96T68 719 aa16.24■□□□□ 0.19
VRK3-205ENST00000593919 OSBPL3Q9H4L5 887 aa16.24■□□□□ 0.19
VRK3-205ENST00000593919 GREM2Q9H772 168 aa16.24■□□□□ 0.19
VRK3-205ENST00000593919 TTC22Q5TAA0 569 aa16.24■□□□□ 0.19
VRK3-205ENST00000593919 TSHZ3Q63HK5 1081 aa16.24■□□□□ 0.19
VRK3-205ENST00000593919 AKT1S1Q96B36 256 aa16.24■□□□□ 0.19
VRK3-205ENST00000593919 IFIT5Q13325 482 aaKnown RBP16.23■□□□□ 0.19
VRK3-205ENST00000593919 TFCP2L1Q9NZI6 479 aa16.23■□□□□ 0.19
VRK3-205ENST00000593919 SPEF2Q9C093 1822 aa16.23■□□□□ 0.19
VRK3-205ENST00000593919 ITGA6P23229 1130 aa16.22■□□□□ 0.19
VRK3-205ENST00000593919 ATG9AQ7Z3C6 839 aa16.22■□□□□ 0.19
VRK3-205ENST00000593919 AK9Q5TCS8 1911 aa16.22■□□□□ 0.19
VRK3-205ENST00000593919 GYS1P13807 737 aa16.22■□□□□ 0.19
VRK3-205ENST00000593919 EN1Q05925 392 aaPredicted RBP16.22■□□□□ 0.19
VRK3-205ENST00000593919 ERFEQ4G0M1 354 aa16.22■□□□□ 0.19
VRK3-205ENST00000593919 LRRC24Q50LG9 513 aa16.22■□□□□ 0.19
VRK3-205ENST00000593919 STAP2Q9UGK3 403 aa16.22■□□□□ 0.19
VRK3-205ENST00000593919 ABCC12Q96J65 1359 aa16.21■□□□□ 0.19
VRK3-205ENST00000593919 EYA2O00167 538 aa16.21■□□□□ 0.19
VRK3-205ENST00000593919 HSP90B1P14625 803 aaKnown RBP16.21■□□□□ 0.19
VRK3-205ENST00000593919 TFCP2Q12800 502 aa16.21■□□□□ 0.19
VRK3-205ENST00000593919 EZH2Q15910 746 aaKnown RBP16.21■□□□□ 0.19
VRK3-205ENST00000593919 AACSQ86V21 672 aa16.21■□□□□ 0.19
VRK3-205ENST00000593919 NBPF5PQ86XG9 351 aaPredicted RBP16.21■□□□□ 0.19
VRK3-205ENST00000593919 CAMKK2Q96RR4 588 aa16.21■□□□□ 0.19
VRK3-205ENST00000593919 NYXQ9GZU5 481 aa16.21■□□□□ 0.19
VRK3-205ENST00000593919 TAF1P21675 1872 aa16.21■□□□□ 0.19
VRK3-205ENST00000593919 CARMIL3Q8ND23 1372 aa16.2■□□□□ 0.18
VRK3-205ENST00000593919 ANKRD18BA2A2Z9 1011 aa16.2■□□□□ 0.18
VRK3-205ENST00000593919 CIAO1O76071 339 aa16.2■□□□□ 0.18
VRK3-205ENST00000593919 NFIXQ14938 502 aa16.2■□□□□ 0.18
VRK3-205ENST00000593919 TAF7LQ5H9L4 462 aa16.2■□□□□ 0.18
VRK3-205ENST00000593919 EAF2Q96CJ1 260 aaPredicted RBP16.2■□□□□ 0.18
VRK3-205ENST00000593919 PUS3Q9BZE2 481 aaKnown RBP16.2■□□□□ 0.18
VRK3-205ENST00000593919 LRP5O75197 1615 aa16.2■□□□□ 0.18
VRK3-205ENST00000593919 GTF2E1P29083 439 aaPredicted RBP16.2■□□□□ 0.18
VRK3-205ENST00000593919 IL15P40933 162 aaPredicted RBP16.2■□□□□ 0.18
VRK3-205ENST00000593919 AOX1Q06278 1338 aa16.19■□□□□ 0.18
VRK3-205ENST00000593919 IFIT2P09913 472 aaKnown RBP16.19■□□□□ 0.18
VRK3-205ENST00000593919 UPF2Q9HAU5 1272 aaKnown RBP16.19■□□□□ 0.18
VRK3-205ENST00000593919 FBXO3Q9UK99 471 aa16.19■□□□□ 0.18
VRK3-205ENST00000593919 CCDC152Q4G0S7 254 aa16.18■□□□□ 0.18
VRK3-205ENST00000593919 TNNI3KQ59H18 835 aa16.18■□□□□ 0.18
VRK3-205ENST00000593919 TPTE2Q6XPS3 522 aa16.18■□□□□ 0.18
VRK3-205ENST00000593919 FPGT-TNNI3KV9GXZ4 949 aa16.18■□□□□ 0.18
VRK3-205ENST00000593919 C3orf67Q6ZVT6 689 aa16.18■□□□□ 0.18
VRK3-205ENST00000593919 PI4K2BQ8TCG2 481 aa16.18■□□□□ 0.18
VRK3-205ENST00000593919 CCDC8Q9H0W5 538 aaPredicted RBP16.18■□□□□ 0.18
VRK3-205ENST00000593919 TLR7Q9NYK1 1049 aaKnown RBP16.18■□□□□ 0.18
VRK3-205ENST00000593919 TNRC6CQ9HCJ0 1690 aaKnown RBP16.18■□□□□ 0.18
VRK3-205ENST00000593919 RTL9Q8NET4 1388 aa16.17■□□□□ 0.18
VRK3-205ENST00000593919 SDSP20132 328 aa16.17■□□□□ 0.18
VRK3-205ENST00000593919 SF3B2Q13435 895 aaKnown RBP16.17■□□□□ 0.18
VRK3-205ENST00000593919 SLC10A5Q5PT55 438 aa16.17■□□□□ 0.18
VRK3-205ENST00000593919 LDHAL6AQ6ZMR3 332 aa16.17■□□□□ 0.18
VRK3-205ENST00000593919 COL23A1Q86Y22 540 aaPredicted RBP16.17■□□□□ 0.18
VRK3-205ENST00000593919 SEC31BQ9NQW1 1179 aa16.17■□□□□ 0.18
VRK3-205ENST00000593919 TTC41PQ6P2S7 1318 aa16.17■□□□□ 0.18
VRK3-205ENST00000593919 COL4A1P02462 1669 aa16.17■□□□□ 0.18
VRK3-205ENST00000593919 QSER1Q2KHR3 1735 aa16.17■□□□□ 0.18
VRK3-205ENST00000593919 CCDC24Q8N4L8 307 aa16.17■□□□□ 0.18
VRK3-205ENST00000593919 ANO8Q9HCE9 1232 aaPredicted RBP16.17■□□□□ 0.18
VRK3-205ENST00000593919 PNPLA7Q6ZV29 1317 aa16.16■□□□□ 0.18
VRK3-205ENST00000593919 RIC1Q4ADV7 1423 aa16.16■□□□□ 0.18
VRK3-205ENST00000593919 NPHP1O15259 732 aa16.16■□□□□ 0.18
VRK3-205ENST00000593919 BAG6P46379 1132 aa16.16■□□□□ 0.18
VRK3-205ENST00000593919 DEFB132Q7Z7B7 95 aa16.16■□□□□ 0.18
VRK3-205ENST00000593919 GPATCH3Q96I76 525 aa16.16■□□□□ 0.18
VRK3-205ENST00000593919 ZNF609O15014 1411 aa16.16■□□□□ 0.18
VRK3-205ENST00000593919 TM4SF1P30408 202 aa16.15■□□□□ 0.18
VRK3-205ENST00000593919 SF3B3Q15393 1217 aaKnown RBP16.15■□□□□ 0.18
VRK3-205ENST00000593919 CNBD1Q8NA66 436 aa16.15■□□□□ 0.18
VRK3-205ENST00000593919 FLAD1Q8NFF5 587 aa16.15■□□□□ 0.18
VRK3-205ENST00000593919 CNNM1Q9NRU3 951 aa16.15■□□□□ 0.18
VRK3-205ENST00000593919 ECHDC1Q9NTX5 307 aa16.15■□□□□ 0.18
VRK3-205ENST00000593919 DBNLQ9UJU6 430 aaKnown RBP16.15■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 78.7 ms