RNA–Protein interactions for RNA: ENST00000593564.2

LSM4-202, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 656 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-202ENST00000593564 DUSP27Q5VZP5 1158 aa31.11■■■□□ 2.57
LSM4-202ENST00000593564 TMC4Q7Z404 712 aa31.11■■■□□ 2.57
LSM4-202ENST00000593564 MBIPQ9NS73 344 aa31.11■■■□□ 2.57
LSM4-202ENST00000593564 HYPKQ9NX55 129 aa31.11■■■□□ 2.57
LSM4-202ENST00000593564 CXCL9Q07325 125 aa31.1■■■□□ 2.57
LSM4-202ENST00000593564 KIAA2012Q0VF49 1180 aa31.1■■■□□ 2.57
LSM4-202ENST00000593564 ZNF853P0CG23 659 aa31.09■■■□□ 2.57
LSM4-202ENST00000593564 GPRC5DQ9NZD1 345 aa31.09■■■□□ 2.57
LSM4-202ENST00000593564 DEFB115Q30KQ5 88 aa31.07■■■□□ 2.56
LSM4-202ENST00000593564 ZNF428Q96B54 188 aa31.07■■■□□ 2.56
LSM4-202ENST00000593564 ADARB2Q9NS39 739 aaKnown RBP31.07■■■□□ 2.56
LSM4-202ENST00000593564 ATP5J2-PTCD1G3V325 749 aa31.06■■■□□ 2.56
LSM4-202ENST00000593564 FOXN1O15353 648 aa31.06■■■□□ 2.56
LSM4-202ENST00000593564 FAM89AQ96GI7 184 aa31.06■■■□□ 2.56
LSM4-202ENST00000593564 DDX60Q8IY21 1712 aaKnown RBP31.05■■■□□ 2.56
LSM4-202ENST00000593564 TRIM28Q13263 835 aaKnown RBP31.05■■■□□ 2.56
LSM4-202ENST00000593564 SF3B3Q15393 1217 aaKnown RBP31.05■■■□□ 2.56
LSM4-202ENST00000593564 CIAPIN1Q6FI81 312 aa31.05■■■□□ 2.56
LSM4-202ENST00000593564 IFT57Q9NWB7 429 aa31.05■■■□□ 2.56
LSM4-202ENST00000593564 CDHR2Q9BYE9 1310 aa31.04■■■□□ 2.56
LSM4-202ENST00000593564 APAF1O14727 1248 aa31.04■■■□□ 2.56
LSM4-202ENST00000593564 GMPSP49915 693 aaPredicted RBP31.04■■■□□ 2.56
LSM4-202ENST00000593564 ABT1Q9ULW3 272 aaKnown RBP31.04■■■□□ 2.56
LSM4-202ENST00000593564 CALD1Q05682 793 aaKnown RBP31.03■■■□□ 2.56
LSM4-202ENST00000593564 AIDAQ96BJ3 306 aa31.03■■■□□ 2.56
LSM4-202ENST00000593564 DUOX1Q9NRD9 1551 aa31.03■■■□□ 2.56
LSM4-202ENST00000593564 LRRC37AA6NMS7 1700 aa31.03■■■□□ 2.56
LSM4-202ENST00000593564 CAPN15O75808 1086 aa31.02■■■□□ 2.56
LSM4-202ENST00000593564 GNAI1P63096 354 aa31.02■■■□□ 2.56
LSM4-202ENST00000593564 TNIP1Q15025 636 aa31.02■■■□□ 2.56
LSM4-202ENST00000593564 WBP1LQ9NX94 342 aa31.02■■■□□ 2.56
LSM4-202ENST00000593564 TAF1P21675 1872 aa31.01■■■□□ 2.56
LSM4-202ENST00000593564 FMR1Q06787 632 aaKnown RBP eCLIP31.01■■■□□ 2.55
LSM4-202ENST00000593564 CELF1Q92879 486 aaKnown RBP31.01■■■□□ 2.55
LSM4-202ENST00000593564 RAD17O75943 681 aa31■■■□□ 2.55
LSM4-202ENST00000593564 CTCFP49711 727 aaPredicted RBP31■■■□□ 2.55
LSM4-202ENST00000593564 PRDM10Q9NQV6 1147 aa31■■■□□ 2.55
LSM4-202ENST00000593564 WDR33Q9C0J8 1336 aaKnown RBP30.99■■■□□ 2.55
LSM4-202ENST00000593564 TRAF5O00463 557 aa30.99■■■□□ 2.55
LSM4-202ENST00000593564 IRS4O14654 1257 aaPredicted RBP30.99■■■□□ 2.55
LSM4-202ENST00000593564 GOLGA2Q08379 1002 aa30.99■■■□□ 2.55
LSM4-202ENST00000593564 YDJCA8MPS7 323 aa30.98■■■□□ 2.55
LSM4-202ENST00000593564 RIC3Q7Z5B4 369 aa30.98■■■□□ 2.55
LSM4-202ENST00000593564 BCL2L13Q9BXK5 485 aa30.98■■■□□ 2.55
LSM4-202ENST00000593564 RTL5Q5HYW3 569 aaPredicted RBP30.97■■■□□ 2.55
LSM4-202ENST00000593564 CST9Q5W186 159 aa30.97■■■□□ 2.55
LSM4-202ENST00000593564 PGAP2Q9UHJ9 254 aa30.97■■■□□ 2.55
LSM4-202ENST00000593564 WASHC4Q2M389 1173 aa30.96■■■□□ 2.55
LSM4-202ENST00000593564 ZBTB38Q8NAP3 1195 aaPredicted RBP30.96■■■□□ 2.55
LSM4-202ENST00000593564 PHAXQ9H814 394 aaKnown RBP30.96■■■□□ 2.55
LSM4-202ENST00000593564 NSFL1CQ9UNZ2 370 aaKnown RBP30.96■■■□□ 2.55
LSM4-202ENST00000593564 ELL2O00472 640 aaPredicted RBP30.95■■■□□ 2.55
LSM4-202ENST00000593564 ZC3H15Q8WU90 426 aaKnown RBP30.95■■■□□ 2.55
LSM4-202ENST00000593564 MAP2K1Q02750 393 aaPredicted RBP30.94■■■□□ 2.54
LSM4-202ENST00000593564 TRPM7Q96QT4 1865 aa30.94■■■□□ 2.54
LSM4-202ENST00000593564 COL4A1P02462 1669 aa30.93■■■□□ 2.54
LSM4-202ENST00000593564 HSP90B1P14625 803 aaKnown RBP30.93■■■□□ 2.54
LSM4-202ENST00000593564 GPSM2P81274 684 aa30.93■■■□□ 2.54
LSM4-202ENST00000593564 POLLQ9UGP5 575 aa30.93■■■□□ 2.54
LSM4-202ENST00000593564 CNOT7Q9UIV1 285 aaKnown RBP30.93■■■□□ 2.54
LSM4-202ENST00000593564 TLL2Q9Y6L7 1015 aa30.93■■■□□ 2.54
LSM4-202ENST00000593564 ECE1P42892 770 aa30.92■■■□□ 2.54
LSM4-202ENST00000593564 HIRAP54198 1017 aaPredicted RBP30.92■■■□□ 2.54
LSM4-202ENST00000593564 RPS8P62241 208 aaKnown RBP30.92■■■□□ 2.54
LSM4-202ENST00000593564 C8orf58Q8NAV2 365 aa30.92■■■□□ 2.54
LSM4-202ENST00000593564 CAPNS2Q96L46 248 aa30.92■■■□□ 2.54
LSM4-202ENST00000593564 MYD88Q99836 296 aa30.92■■■□□ 2.54
LSM4-202ENST00000593564 CHMP4AQ9BY43 222 aa30.92■■■□□ 2.54
LSM4-202ENST00000593564 C6orf229H3BNL8 230 aa30.91■■■□□ 2.54
LSM4-202ENST00000593564 CCDC191Q8NCU4 936 aa30.91■■■□□ 2.54
LSM4-202ENST00000593564 TRPM4Q8TD43 1214 aa30.91■■■□□ 2.54
LSM4-202ENST00000593564 THSD7BQ9C0I4 1608 aa30.91■■■□□ 2.54
LSM4-202ENST00000593564 PAXIP1Q6ZW49 1069 aaPredicted RBP30.9■■■□□ 2.54
LSM4-202ENST00000593564 DPF2Q92785 391 aa30.9■■■□□ 2.54
LSM4-202ENST00000593564 EYA3Q99504 573 aa30.9■■■□□ 2.54
LSM4-202ENST00000593564 GLIS2Q9BZE0 524 aaPredicted RBP30.9■■■□□ 2.54
LSM4-202ENST00000593564 DBNDD1Q9H9R9 158 aa30.9■■■□□ 2.54
LSM4-202ENST00000593564 H7C1D1 291 aa30.89■■■□□ 2.54
LSM4-202ENST00000593564 PSMD14O00487 310 aa30.89■■■□□ 2.54
LSM4-202ENST00000593564 LBX1P52954 281 aa30.89■■■□□ 2.54
LSM4-202ENST00000593564 CCDC30Q5VVM6 783 aa30.89■■■□□ 2.54
LSM4-202ENST00000593564 CYP4F22Q6NT55 531 aa30.89■■■□□ 2.54
LSM4-202ENST00000593564 MICALL2Q8IY33 904 aa30.89■■■□□ 2.54
LSM4-202ENST00000593564 SHTN1A0MZ66 631 aa30.88■■■□□ 2.53
LSM4-202ENST00000593564 RIMBP2O15034 1052 aa30.88■■■□□ 2.53
LSM4-202ENST00000593564 CELF2O95319 508 aaKnown RBP30.88■■■□□ 2.53
LSM4-202ENST00000593564 PCCAP05165 728 aaPredicted RBP30.88■■■□□ 2.53
LSM4-202ENST00000593564 HSPA8P11142 646 aaKnown RBP30.88■■■□□ 2.53
LSM4-202ENST00000593564 TBC1D16Q8TBP0 767 aa30.88■■■□□ 2.53
LSM4-202ENST00000593564 ZBTB12Q9Y330 459 aaPredicted RBP30.88■■■□□ 2.53
LSM4-202ENST00000593564 DDX58O95786 925 aaKnown RBP30.87■■■□□ 2.53
LSM4-202ENST00000593564 CWC25Q9NXE8 425 aaPredicted RBP30.87■■■□□ 2.53
LSM4-202ENST00000593564 PODXL2Q9NZ53 605 aa30.87■■■□□ 2.53
LSM4-202ENST00000593564 ECE2O60344 883 aa30.86■■■□□ 2.53
LSM4-202ENST00000593564 CDC37L1Q7L3B6 337 aa30.86■■■□□ 2.53
LSM4-202ENST00000593564 SAPCD2Q86UD0 394 aa30.86■■■□□ 2.53
LSM4-202ENST00000593564 GPR101Q96P66 508 aaPredicted RBP30.86■■■□□ 2.53
LSM4-202ENST00000593564 METTL22Q9BUU2 404 aaPredicted RBP30.86■■■□□ 2.53
LSM4-202ENST00000593564 SEC31BQ9NQW1 1179 aa30.86■■■□□ 2.53
LSM4-202ENST00000593564 RPS12P25398 132 aaKnown RBP30.85■■■□□ 2.53
Retrieved 100 of 20,778 RNA–protein pairs in 8.7 ms