RNA–Protein interactions for RNA: ENST00000593251.5

RETREG3-212, Transcript of reticulophagy regulator family member 3, humanhuman

TSL 4

Gene RETREG3, Length 565 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RETREG3-212ENST00000593251 VPS33BQ9H267 617 aa22.86■■□□□ 1.25
RETREG3-212ENST00000593251 CHPF2Q9P2E5 772 aa22.86■■□□□ 1.25
RETREG3-212ENST00000593251 LRRC37AA6NMS7 1700 aa22.85■■□□□ 1.25
RETREG3-212ENST00000593251 GMPSP49915 693 aaPredicted RBP22.85■■□□□ 1.25
RETREG3-212ENST00000593251 CST9Q5W186 159 aa22.85■■□□□ 1.25
RETREG3-212ENST00000593251 DDX46Q7L014 1031 aaKnown RBP22.85■■□□□ 1.25
RETREG3-212ENST00000593251 ADARB2Q9NS39 739 aaKnown RBP22.85■■□□□ 1.25
RETREG3-212ENST00000593251 DUOX1Q9NRD9 1551 aa22.84■■□□□ 1.25
RETREG3-212ENST00000593251 SH3TC1Q8TE82 1336 aa22.84■■□□□ 1.25
RETREG3-212ENST00000593251 CHL1O00533 1208 aa22.84■■□□□ 1.25
RETREG3-212ENST00000593251 HSPA8P11142 646 aaKnown RBP22.84■■□□□ 1.25
RETREG3-212ENST00000593251 GRAPQ13588 217 aa22.84■■□□□ 1.25
RETREG3-212ENST00000593251 CYP4F22Q6NT55 531 aa22.84■■□□□ 1.25
RETREG3-212ENST00000593251 GRAPLQ8TC17 118 aaPredicted RBP22.84■■□□□ 1.25
RETREG3-212ENST00000593251 TRIM35Q9UPQ4 493 aa22.84■■□□□ 1.25
RETREG3-212ENST00000593251 MYBBP1AQ9BQG0 1328 aaKnown RBP22.83■■□□□ 1.25
RETREG3-212ENST00000593251 RAD17O75943 681 aa22.83■■□□□ 1.25
RETREG3-212ENST00000593251 KIAA2012Q0VF49 1180 aa22.83■■□□□ 1.25
RETREG3-212ENST00000593251 DDX10Q13206 875 aaKnown RBP22.83■■□□□ 1.25
RETREG3-212ENST00000593251 CIAPIN1Q6FI81 312 aa22.83■■□□□ 1.25
RETREG3-212ENST00000593251 CAPNS2Q96L46 248 aa22.83■■□□□ 1.25
RETREG3-212ENST00000593251 COL4A1P02462 1669 aa22.82■■□□□ 1.24
RETREG3-212ENST00000593251 MAP2K1Q02750 393 aaPredicted RBP22.82■■□□□ 1.24
RETREG3-212ENST00000593251 HDGFL1Q5TGJ6 251 aa22.82■■□□□ 1.24
RETREG3-212ENST00000593251 RUNDC1Q96C34 613 aa22.81■■□□□ 1.24
RETREG3-212ENST00000593251 BCL2L13Q9BXK5 485 aa22.81■■□□□ 1.24
RETREG3-212ENST00000593251 GLIS2Q9BZE0 524 aaPredicted RBP22.8■■□□□ 1.24
RETREG3-212ENST00000593251 TLL2Q9Y6L7 1015 aa22.8■■□□□ 1.24
RETREG3-212ENST00000593251 SHTN1A0MZ66 631 aa22.79■■□□□ 1.24
RETREG3-212ENST00000593251 YDJCA8MPS7 323 aa22.79■■□□□ 1.24
RETREG3-212ENST00000593251 ATP5J2-PTCD1G3V325 749 aa22.79■■□□□ 1.24
RETREG3-212ENST00000593251 ECE1P42892 770 aa22.79■■□□□ 1.24
RETREG3-212ENST00000593251 WDR43Q15061 677 aaKnown RBP eCLIP22.79■■□□□ 1.24
RETREG3-212ENST00000593251 PLBD2Q8NHP8 589 aa22.79■■□□□ 1.24
RETREG3-212ENST00000593251 FAM89AQ96GI7 184 aa22.79■■□□□ 1.24
RETREG3-212ENST00000593251 POLR2AP24928 1970 aaKnown RBP22.78■■□□□ 1.24
RETREG3-212ENST00000593251 HIRAP54198 1017 aaPredicted RBP22.78■■□□□ 1.24
RETREG3-212ENST00000593251 TNIP1Q15025 636 aa22.78■■□□□ 1.24
RETREG3-212ENST00000593251 RTL5Q5HYW3 569 aaPredicted RBP22.78■■□□□ 1.24
RETREG3-212ENST00000593251 ANKRD13DQ6ZTN6 518 aa22.78■■□□□ 1.24
RETREG3-212ENST00000593251 TRPM4Q8TD43 1214 aa22.78■■□□□ 1.24
RETREG3-212ENST00000593251 GPR101Q96P66 508 aaPredicted RBP22.78■■□□□ 1.24
RETREG3-212ENST00000593251 AOC2O75106 756 aa22.77■■□□□ 1.24
RETREG3-212ENST00000593251 CELF2O95319 508 aaKnown RBP22.77■■□□□ 1.24
RETREG3-212ENST00000593251 CELF1Q92879 486 aaKnown RBP22.77■■□□□ 1.24
RETREG3-212ENST00000593251 ISCA1Q9BUE6 129 aa22.77■■□□□ 1.24
RETREG3-212ENST00000593251 ADAMTS8Q9UP79 889 aa22.77■■□□□ 1.24
RETREG3-212ENST00000593251 ZNF408Q9H9D4 720 aa22.76■■□□□ 1.23
RETREG3-212ENST00000593251 DBF4Q9UBU7 674 aaPredicted RBP22.76■■□□□ 1.23
RETREG3-212ENST00000593251 CNOT7Q9UIV1 285 aaKnown RBP22.76■■□□□ 1.23
RETREG3-212ENST00000593251 CDHR2Q9BYE9 1310 aa22.76■■□□□ 1.23
RETREG3-212ENST00000593251 TMC4Q7Z404 712 aa22.75■■□□□ 1.23
RETREG3-212ENST00000593251 DBNDD1Q9H9R9 158 aa22.75■■□□□ 1.23
RETREG3-212ENST00000593251 PGAP2Q9UHJ9 254 aa22.75■■□□□ 1.23
RETREG3-212ENST00000593251 NSFL1CQ9UNZ2 370 aaKnown RBP22.75■■□□□ 1.23
RETREG3-212ENST00000593251 ZBTB12Q9Y330 459 aaPredicted RBP22.75■■□□□ 1.23
RETREG3-212ENST00000593251 RIMBP2O15034 1052 aa22.74■■□□□ 1.23
RETREG3-212ENST00000593251 HOXB7P09629 217 aa22.74■■□□□ 1.23
RETREG3-212ENST00000593251 DUSP27Q5VZP5 1158 aa22.74■■□□□ 1.23
RETREG3-212ENST00000593251 SAPCD2Q86UD0 394 aa22.74■■□□□ 1.23
RETREG3-212ENST00000593251 BEGAINQ9BUH8 593 aa22.74■■□□□ 1.23
RETREG3-212ENST00000593251 TSKSQ9UJT2 592 aa22.74■■□□□ 1.23
RETREG3-212ENST00000593251 SF3B3Q15393 1217 aaKnown RBP22.73■■□□□ 1.23
RETREG3-212ENST00000593251 WASHC4Q2M389 1173 aa22.73■■□□□ 1.23
RETREG3-212ENST00000593251 MICALL2Q8IY33 904 aa22.73■■□□□ 1.23
RETREG3-212ENST00000593251 CFAP44Q96MT7 982 aa22.73■■□□□ 1.23
RETREG3-212ENST00000593251 MBIPQ9NS73 344 aa22.73■■□□□ 1.23
RETREG3-212ENST00000593251 C6orf229H3BNL8 230 aa22.72■■□□□ 1.23
RETREG3-212ENST00000593251 PSMD14O00487 310 aa22.72■■□□□ 1.23
RETREG3-212ENST00000593251 GPSM2P81274 684 aa22.72■■□□□ 1.23
RETREG3-212ENST00000593251 DLK2Q6UY11 383 aa22.72■■□□□ 1.23
RETREG3-212ENST00000593251 ABHD8Q96I13 439 aa22.72■■□□□ 1.23
RETREG3-212ENST00000593251 HYPKQ9NX55 129 aa22.72■■□□□ 1.23
RETREG3-212ENST00000593251 POLLQ9UGP5 575 aa22.72■■□□□ 1.23
RETREG3-212ENST00000593251 SCN9AQ15858 1988 aa22.72■■□□□ 1.23
RETREG3-212ENST00000593251 H7C1D1 291 aa22.71■■□□□ 1.23
RETREG3-212ENST00000593251 IRS4O14654 1257 aaPredicted RBP22.71■■□□□ 1.23
RETREG3-212ENST00000593251 CDC37L1Q7L3B6 337 aa22.71■■□□□ 1.23
RETREG3-212ENST00000593251 SAMD7Q7Z3H4 446 aa22.71■■□□□ 1.23
RETREG3-212ENST00000593251 ZC3H15Q8WU90 426 aaKnown RBP22.71■■□□□ 1.23
RETREG3-212ENST00000593251 CASP8AP2Q9UKL3 1982 aa22.7■■□□□ 1.23
RETREG3-212ENST00000593251 DOK7Q18PE1 504 aa22.7■■□□□ 1.22
RETREG3-212ENST00000593251 USP48Q86UV5 1035 aa22.7■■□□□ 1.22
RETREG3-212ENST00000593251 KCNQ5Q9NR82 932 aa22.7■■□□□ 1.22
RETREG3-212ENST00000593251 MAP2K2P36507 400 aa22.69■■□□□ 1.22
RETREG3-212ENST00000593251 PHAXQ9H814 394 aaKnown RBP22.69■■□□□ 1.22
RETREG3-212ENST00000593251 ELL2O00472 640 aaPredicted RBP22.68■■□□□ 1.22
RETREG3-212ENST00000593251 ECE2O60344 883 aa22.68■■□□□ 1.22
RETREG3-212ENST00000593251 EGFRP00533 1210 aa22.68■■□□□ 1.22
RETREG3-212ENST00000593251 TBC1D10BQ4KMP7 808 aaPredicted RBP22.68■■□□□ 1.22
RETREG3-212ENST00000593251 RIC3Q7Z5B4 369 aa22.68■■□□□ 1.22
RETREG3-212ENST00000593251 RTL9Q8NET4 1388 aa22.67■■□□□ 1.22
RETREG3-212ENST00000593251 RPS8P62241 208 aaKnown RBP22.67■■□□□ 1.22
RETREG3-212ENST00000593251 TRIM28Q13263 835 aaKnown RBP22.67■■□□□ 1.22
RETREG3-212ENST00000593251 RBM26Q5T8P6 1007 aaKnown RBP22.67■■□□□ 1.22
RETREG3-212ENST00000593251 DPF2Q92785 391 aa22.67■■□□□ 1.22
RETREG3-212ENST00000593251 SEC31BQ9NQW1 1179 aa22.67■■□□□ 1.22
RETREG3-212ENST00000593251 ZNF853P0CG23 659 aa22.66■■□□□ 1.22
RETREG3-212ENST00000593251 GOLGA2Q08379 1002 aa22.66■■□□□ 1.22
RETREG3-212ENST00000593251 TBC1D16Q8TBP0 767 aa22.66■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms