RNA–Protein interactions for RNA: ENST00000591475.5

VPS4B-206, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 1 (best)

Gene VPS4B, Length 2,008 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-206ENST00000591475 KCNB2Q92953 911 aa12.93□□□□□ -0.34
VPS4B-206ENST00000591475 GJD4Q96KN9 370 aaPredicted RBP12.93□□□□□ -0.34
VPS4B-206ENST00000591475 ZSWIM6Q9HCJ5 1215 aa12.93□□□□□ -0.34
VPS4B-206ENST00000591475 CHPF2Q9P2E5 772 aa12.93□□□□□ -0.34
VPS4B-206ENST00000591475 MTMR6Q9Y217 621 aa12.93□□□□□ -0.34
VPS4B-206ENST00000591475 WNK3Q9BYP7 1800 aa12.92□□□□□ -0.34
VPS4B-206ENST00000591475 SHANK3Q9BYB0 1731 aa12.92□□□□□ -0.34
VPS4B-206ENST00000591475 PI4KAP2A4QPH2 592 aa12.92□□□□□ -0.34
VPS4B-206ENST00000591475 CPA1P15085 419 aa12.92□□□□□ -0.34
VPS4B-206ENST00000591475 DNM1Q05193 864 aaKnown RBP12.92□□□□□ -0.34
VPS4B-206ENST00000591475 GIMAP6Q6P9H5 292 aa12.92□□□□□ -0.34
VPS4B-206ENST00000591475 ZNF790Q6PG37 636 aa12.92□□□□□ -0.34
VPS4B-206ENST00000591475 MPNDQ8N594 471 aa12.92□□□□□ -0.34
VPS4B-206ENST00000591475 PI4KAP1Q8N8J0 262 aa12.92□□□□□ -0.34
VPS4B-206ENST00000591475 TTC12Q9H892 705 aaPredicted RBP12.92□□□□□ -0.34
VPS4B-206ENST00000591475 ECHDC1Q9NTX5 307 aa12.92□□□□□ -0.34
VPS4B-206ENST00000591475 SPTLC3Q9NUV7 552 aa12.92□□□□□ -0.34
VPS4B-206ENST00000591475 TPM3P06753 285 aa12.91□□□□□ -0.34
VPS4B-206ENST00000591475 PDIA4P13667 645 aaKnown RBP12.91□□□□□ -0.34
VPS4B-206ENST00000591475 PTH1RQ03431 593 aa12.91□□□□□ -0.34
VPS4B-206ENST00000591475 MTX1Q13505 466 aa12.91□□□□□ -0.34
VPS4B-206ENST00000591475 PRPF40BQ6NWY9 871 aaKnown RBP12.91□□□□□ -0.34
VPS4B-206ENST00000591475 ERC1Q8IUD2 1116 aa12.91□□□□□ -0.34
VPS4B-206ENST00000591475 ADCY9O60503 1353 aa12.9□□□□□ -0.34
VPS4B-206ENST00000591475 VPS37CA5D8V6 355 aaPredicted RBP12.9□□□□□ -0.34
VPS4B-206ENST00000591475 IFIT2P09913 472 aaKnown RBP12.9□□□□□ -0.34
VPS4B-206ENST00000591475 ZKSCAN1P17029 563 aaPredicted RBP12.9□□□□□ -0.34
VPS4B-206ENST00000591475 GTF2F1P35269 517 aaKnown RBP eCLIP12.9□□□□□ -0.34
VPS4B-206ENST00000591475 ADCK5Q3MIX3 580 aa12.9□□□□□ -0.34
VPS4B-206ENST00000591475 TTC5Q8N0Z6 440 aa12.9□□□□□ -0.34
VPS4B-206ENST00000591475 EVI5LQ96CN4 794 aa12.9□□□□□ -0.34
VPS4B-206ENST00000591475 HDAC5Q9UQL6 1122 aa12.9□□□□□ -0.34
VPS4B-206ENST00000591475 ATRNO75882 1429 aa12.9□□□□□ -0.34
VPS4B-206ENST00000591475 SIPA1L3O60292 1781 aaPredicted RBP12.9□□□□□ -0.34
VPS4B-206ENST00000591475 A0A0G2JS52 829 aa12.89□□□□□ -0.35
VPS4B-206ENST00000591475 KCNQ3O43525 872 aa12.89□□□□□ -0.35
VPS4B-206ENST00000591475 CCDC192P0DO97 292 aa12.89□□□□□ -0.35
VPS4B-206ENST00000591475 PLCB2Q00722 1185 aa12.89□□□□□ -0.35
VPS4B-206ENST00000591475 NECTIN1Q15223 517 aa12.89□□□□□ -0.35
VPS4B-206ENST00000591475 QTRT2Q9H974 415 aaKnown RBP12.89□□□□□ -0.35
VPS4B-206ENST00000591475 TMOD3Q9NYL9 352 aa12.89□□□□□ -0.35
VPS4B-206ENST00000591475 CCDC171Q6TFL3 1326 aa12.89□□□□□ -0.35
VPS4B-206ENST00000591475 GOLGA6L6A8MZA4 724 aa12.89□□□□□ -0.35
VPS4B-206ENST00000591475 HIP1O00291 1037 aa12.89□□□□□ -0.35
VPS4B-206ENST00000591475 ONECUT3O60422 494 aaPredicted RBP12.89□□□□□ -0.35
VPS4B-206ENST00000591475 ALDH1L1O75891 902 aa12.89□□□□□ -0.35
VPS4B-206ENST00000591475 HEG1Q9ULI3 1381 aa12.89□□□□□ -0.35
VPS4B-206ENST00000591475 SLC39A6Q13433 755 aa12.88□□□□□ -0.35
VPS4B-206ENST00000591475 ME3Q16798 604 aa12.88□□□□□ -0.35
VPS4B-206ENST00000591475 ZNF772Q68DY9 489 aaPredicted RBP12.88□□□□□ -0.35
VPS4B-206ENST00000591475 MARCH10Q8NA82 808 aaPredicted RBP12.88□□□□□ -0.35
VPS4B-206ENST00000591475 C9orf78Q9NZ63 289 aaPredicted RBP12.88□□□□□ -0.35
VPS4B-206ENST00000591475 RBM8AQ9Y5S9 174 aaKnown RBP12.88□□□□□ -0.35
VPS4B-206ENST00000591475 GIGYF1O75420 1035 aaPredicted RBP12.88□□□□□ -0.35
VPS4B-206ENST00000591475 PSMA5P28066 241 aa12.88□□□□□ -0.35
VPS4B-206ENST00000591475 KCNJ4P48050 445 aa12.88□□□□□ -0.35
VPS4B-206ENST00000591475 KRT85P78386 507 aa12.88□□□□□ -0.35
VPS4B-206ENST00000591475 ST3GAL1Q11201 340 aa12.88□□□□□ -0.35
VPS4B-206ENST00000591475 CREB3L3Q68CJ9 461 aa12.88□□□□□ -0.35
VPS4B-206ENST00000591475 C17orf53Q8N3J3 647 aaPredicted RBP12.88□□□□□ -0.35
VPS4B-206ENST00000591475 CCDC94Q9BW85 323 aaPredicted RBP12.88□□□□□ -0.35
VPS4B-206ENST00000591475 DBF4Q9UBU7 674 aaPredicted RBP12.88□□□□□ -0.35
VPS4B-206ENST00000591475 GLI3P10071 1580 aa12.87□□□□□ -0.35
VPS4B-206ENST00000591475 PDCP20941 246 aa12.87□□□□□ -0.35
VPS4B-206ENST00000591475 LARP1BQ659C4 914 aaKnown RBP12.87□□□□□ -0.35
VPS4B-206ENST00000591475 NECAB1Q8N987 351 aa12.87□□□□□ -0.35
VPS4B-206ENST00000591475 FMNL2Q96PY5 1086 aa12.87□□□□□ -0.35
VPS4B-206ENST00000591475 ELP1O95163 1332 aa12.87□□□□□ -0.35
VPS4B-206ENST00000591475 AP5Z1O43299 807 aa12.86□□□□□ -0.35
VPS4B-206ENST00000591475 ANXA1P04083 346 aa12.86□□□□□ -0.35
VPS4B-206ENST00000591475 ANKRD1Q15327 319 aa12.86□□□□□ -0.35
VPS4B-206ENST00000591475 MAP3K11Q16584 847 aa12.86□□□□□ -0.35
VPS4B-206ENST00000591475 AACSQ86V21 672 aa12.86□□□□□ -0.35
VPS4B-206ENST00000591475 SMAP1Q8IYB5 467 aaPredicted RBP12.86□□□□□ -0.35
VPS4B-206ENST00000591475 KIAA1524Q8TCG1 905 aa12.86□□□□□ -0.35
VPS4B-206ENST00000591475 TPCN1Q9ULQ1 816 aa12.86□□□□□ -0.35
VPS4B-206ENST00000591475 KIF3AQ9Y496 699 aa12.86□□□□□ -0.35
VPS4B-206ENST00000591475 FAM200AQ8TCP9 573 aa12.86□□□□□ -0.35
VPS4B-206ENST00000591475 PIGBQ92521 554 aa12.86□□□□□ -0.35
VPS4B-206ENST00000591475 MAP4K1Q92918 833 aa12.86□□□□□ -0.35
VPS4B-206ENST00000591475 ZNF496Q96IT1 587 aaPredicted RBP12.86□□□□□ -0.35
VPS4B-206ENST00000591475 NUP62CLQ9H1M0 184 aa12.86□□□□□ -0.35
VPS4B-206ENST00000591475 MAP3K2Q9Y2U5 619 aa12.86□□□□□ -0.35
VPS4B-206ENST00000591475 SLC27A2O14975 620 aa12.85□□□□□ -0.35
VPS4B-206ENST00000591475 SNRPA1P09661 255 aaKnown RBP12.85□□□□□ -0.35
VPS4B-206ENST00000591475 CHAF1AQ13111 956 aaPredicted RBP12.85□□□□□ -0.35
VPS4B-206ENST00000591475 NMIQ13287 307 aaPredicted RBP12.85□□□□□ -0.35
VPS4B-206ENST00000591475 RNF20Q5VTR2 975 aa12.85□□□□□ -0.35
VPS4B-206ENST00000591475 TTC6Q86TZ1 520 aa12.85□□□□□ -0.35
VPS4B-206ENST00000591475 SYTL4Q96C24 671 aaPredicted RBP12.85□□□□□ -0.35
VPS4B-206ENST00000591475 KCNF1Q9H3M0 494 aa12.85□□□□□ -0.35
VPS4B-206ENST00000591475 SNRKQ9NRH2 765 aa12.85□□□□□ -0.35
VPS4B-206ENST00000591475 PA2G4Q9UQ80 394 aaKnown RBP12.85□□□□□ -0.35
VPS4B-206ENST00000591475 BCL9O00512 1426 aa12.85□□□□□ -0.35
VPS4B-206ENST00000591475 THSD7AQ9UPZ6 1657 aa12.85□□□□□ -0.35
VPS4B-206ENST00000591475 KSR2Q6VAB6 950 aa12.84□□□□□ -0.35
VPS4B-206ENST00000591475 SPC24Q8NBT2 197 aa12.84□□□□□ -0.35
VPS4B-206ENST00000591475 ARID3AQ99856 593 aa12.84□□□□□ -0.35
VPS4B-206ENST00000591475 ALDH8A1Q9H2A2 487 aaPredicted RBP12.84□□□□□ -0.35
VPS4B-206ENST00000591475 TOGARAM1Q9Y4F4 1720 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 89.5 ms