RNA–Protein interactions for RNA: ENST00000589349.5

DNMT1-219, Transcript of DNA methyltransferase 1, human

TSL 4

Gene DNMT1, Length 603 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DNMT1-219	ENST00000589349	ITSN1	Q15811	1721 aa		11.53	□□□□□ -0.56
DNMT1-219	ENST00000589349	BMP1	P13497	986 aa		11.53	□□□□□ -0.56
DNMT1-219	ENST00000589349	SCARF1	Q14162	830 aa		11.53	□□□□□ -0.56
DNMT1-219	ENST00000589349	QRICH2	Q9H0J4	1663 aa		11.52	□□□□□ -0.56
DNMT1-219	ENST00000589349	MARF1	Q9Y4F3	1742 aa	Known RBP	11.52	□□□□□ -0.56
DNMT1-219	ENST00000589349	SLIT2	O94813	1529 aa		11.52	□□□□□ -0.57
DNMT1-219	ENST00000589349		Q6ZVU0	165 aa		11.52	□□□□□ -0.57
DNMT1-219	ENST00000589349	KRT27	Q7Z3Y8	459 aa		11.52	□□□□□ -0.57
DNMT1-219	ENST00000589349	RNF135	Q8IUD6	432 aa		11.52	□□□□□ -0.57
DNMT1-219	ENST00000589349	SUGP2	Q8IX01	1082 aa	Known RBP eCLIP	11.52	□□□□□ -0.57
DNMT1-219	ENST00000589349	PCDHB11	Q9Y5F2	797 aa		11.52	□□□□□ -0.57
DNMT1-219	ENST00000589349	POLR3A	O14802	1390 aa	Predicted RBP	11.52	□□□□□ -0.57
DNMT1-219	ENST00000589349	TRIM46	Q7Z4K8	759 aa		11.51	□□□□□ -0.57
DNMT1-219	ENST00000589349	CCER1	Q8TC90	406 aa	Predicted RBP	11.51	□□□□□ -0.57
DNMT1-219	ENST00000589349	KIFC2	Q96AC6	838 aa		11.51	□□□□□ -0.57
DNMT1-219	ENST00000589349	TSEN34	Q9BSV6	310 aa	Known RBP	11.51	□□□□□ -0.57
DNMT1-219	ENST00000589349	ALG2	Q9H553	416 aa		11.51	□□□□□ -0.57
DNMT1-219	ENST00000589349	TRPM1	Q7Z4N2	1603 aa		11.5	□□□□□ -0.57
DNMT1-219	ENST00000589349	GC	P02774	474 aa		11.5	□□□□□ -0.57
DNMT1-219	ENST00000589349	CSB-PGBD3	P0DP91	1061 aa		11.5	□□□□□ -0.57
DNMT1-219	ENST00000589349	HDGFL2	Q7Z4V5	671 aa	Predicted RBP	11.5	□□□□□ -0.57
DNMT1-219	ENST00000589349	CYLD	Q9NQC7	956 aa		11.5	□□□□□ -0.57
DNMT1-219	ENST00000589349	GMPR2	Q9P2T1	348 aa	Known RBP	11.5	□□□□□ -0.57
DNMT1-219	ENST00000589349	TRPM3	Q9HCF6	1732 aa	Predicted RBP	11.49	□□□□□ -0.57
DNMT1-219	ENST00000589349	POM121C	A8CG34	1229 aa		11.49	□□□□□ -0.57
DNMT1-219	ENST00000589349	CBLB	Q13191	982 aa		11.49	□□□□□ -0.57
DNMT1-219	ENST00000589349	FAM182B	Q5T319	152 aa		11.49	□□□□□ -0.57
DNMT1-219	ENST00000589349	ZNF787	Q6DD87	383 aa		11.49	□□□□□ -0.57
DNMT1-219	ENST00000589349	LINC00528	Q8N1L1	170 aa		11.49	□□□□□ -0.57
DNMT1-219	ENST00000589349	KTN1	Q86UP2	1357 aa	Known RBP	11.49	□□□□□ -0.57
DNMT1-219	ENST00000589349	LILRA1	O75019	489 aa		11.48	□□□□□ -0.57
DNMT1-219	ENST00000589349	ERVK-9	P63128	1117 aa		11.48	□□□□□ -0.57
DNMT1-219	ENST00000589349	PDE3B	Q13370	1112 aa		11.48	□□□□□ -0.57
DNMT1-219	ENST00000589349	CC2D2B	Q6DHV5	1058 aa		11.48	□□□□□ -0.57
DNMT1-219	ENST00000589349	PHTF2	Q8N3S3	785 aa		11.48	□□□□□ -0.57
DNMT1-219	ENST00000589349	POLR3GL	Q9BT43	218 aa		11.48	□□□□□ -0.57
DNMT1-219	ENST00000589349	DOLK	Q9UPQ8	538 aa		11.48	□□□□□ -0.57
DNMT1-219	ENST00000589349	PLCH1	Q4KWH8	1693 aa		11.47	□□□□□ -0.57
DNMT1-219	ENST00000589349	ALS2	Q96Q42	1657 aa		11.47	□□□□□ -0.57
DNMT1-219	ENST00000589349	SPATA31A5	Q5VU36	1347 aa		11.47	□□□□□ -0.57
DNMT1-219	ENST00000589349	TTC21B	Q7Z4L5	1316 aa		11.47	□□□□□ -0.57
DNMT1-219	ENST00000589349	SPATA31A7	Q8IWB4	1347 aa		11.47	□□□□□ -0.57
DNMT1-219	ENST00000589349	ST20-MTHFS	A0A0A6YYL1	179 aa		11.47	□□□□□ -0.57
DNMT1-219	ENST00000589349	ADH1A	P07327	375 aa		11.47	□□□□□ -0.57
DNMT1-219	ENST00000589349	BMP2	P12643	396 aa		11.47	□□□□□ -0.57
DNMT1-219	ENST00000589349	LARP1	Q6PKG0	1096 aa	Known RBP	11.47	□□□□□ -0.57
DNMT1-219	ENST00000589349	TOM1L2	Q6ZVM7	507 aa		11.47	□□□□□ -0.57
DNMT1-219	ENST00000589349	TRIM47	Q96LD4	638 aa		11.47	□□□□□ -0.57
DNMT1-219	ENST00000589349	CCDC85A	Q96PX6	553 aa	Predicted RBP	11.47	□□□□□ -0.57
DNMT1-219	ENST00000589349	PURB	Q96QR8	312 aa	Known RBP	11.47	□□□□□ -0.57
DNMT1-219	ENST00000589349	USP6	P35125	1406 aa		11.46	□□□□□ -0.57
DNMT1-219	ENST00000589349	C11orf95	C9JLR9	678 aa	Predicted RBP	11.46	□□□□□ -0.57
DNMT1-219	ENST00000589349	MYC	P01106	439 aa	Predicted RBP	11.46	□□□□□ -0.57
DNMT1-219	ENST00000589349	MAP7D1	Q3KQU3	841 aa		11.46	□□□□□ -0.57
DNMT1-219	ENST00000589349	ZFP42	Q96MM3	310 aa		11.46	□□□□□ -0.57
DNMT1-219	ENST00000589349	SLC12A5	Q9H2X9	1139 aa		11.46	□□□□□ -0.57
DNMT1-219	ENST00000589349	TERF2IP	Q9NYB0	399 aa		11.46	□□□□□ -0.57
DNMT1-219	ENST00000589349	COL14A1	Q05707	1796 aa	Known RBP	11.46	□□□□□ -0.58
DNMT1-219	ENST00000589349	ABCA3	Q99758	1704 aa		11.46	□□□□□ -0.58
DNMT1-219	ENST00000589349	GLI3	P10071	1580 aa		11.45	□□□□□ -0.58
DNMT1-219	ENST00000589349	C6orf118	Q5T5N4	469 aa		11.45	□□□□□ -0.58
DNMT1-219	ENST00000589349	HDGFL1	Q5TGJ6	251 aa		11.45	□□□□□ -0.58
DNMT1-219	ENST00000589349	DEFB132	Q7Z7B7	95 aa		11.45	□□□□□ -0.58
DNMT1-219	ENST00000589349	KCNH5	Q8NCM2	988 aa		11.45	□□□□□ -0.58
DNMT1-219	ENST00000589349	BRD4	O60885	1362 aa	Predicted RBP	11.44	□□□□□ -0.58
DNMT1-219	ENST00000589349	NWD2	Q9ULI1	1742 aa		11.44	□□□□□ -0.58
DNMT1-219	ENST00000589349	SPATA31A1	Q5TZJ5	1347 aa		11.44	□□□□□ -0.58
DNMT1-219	ENST00000589349	TOPAZ1	Q8N9V7	1692 aa		11.44	□□□□□ -0.58
DNMT1-219	ENST00000589349	TRAK2	O60296	914 aa		11.44	□□□□□ -0.58
DNMT1-219	ENST00000589349	BAG6	P46379	1132 aa		11.44	□□□□□ -0.58
DNMT1-219	ENST00000589349	TCP11L2	Q8N4U5	519 aa		11.44	□□□□□ -0.58
DNMT1-219	ENST00000589349	NFATC2IP	Q8NCF5	419 aa		11.44	□□□□□ -0.58
DNMT1-219	ENST00000589349	TNKS1BP1	Q9C0C2	1729 aa	Known RBP	11.43	□□□□□ -0.58
DNMT1-219	ENST00000589349	USP19	O94966	1318 aa		11.43	□□□□□ -0.58
DNMT1-219	ENST00000589349	TTC21A	Q8NDW8	1320 aa		11.43	□□□□□ -0.58
DNMT1-219	ENST00000589349	ADD1	P35611	737 aa	Known RBP	11.43	□□□□□ -0.58
DNMT1-219	ENST00000589349	TMF1	P82094	1093 aa		11.43	□□□□□ -0.58
DNMT1-219	ENST00000589349	CYP2U1	Q7Z449	544 aa		11.43	□□□□□ -0.58
DNMT1-219	ENST00000589349	NME9	Q86XW9	330 aa		11.43	□□□□□ -0.58
DNMT1-219	ENST00000589349	PLPP7	Q8NBV4	271 aa		11.43	□□□□□ -0.58
DNMT1-219	ENST00000589349	ADAMTS19	Q8TE59	1207 aa		11.43	□□□□□ -0.58
DNMT1-219	ENST00000589349	GLMN	Q92990	594 aa		11.43	□□□□□ -0.58
DNMT1-219	ENST00000589349	ZMYND15	Q9H091	742 aa		11.43	□□□□□ -0.58
DNMT1-219	ENST00000589349	POTEC	B2RU33	542 aa		11.42	□□□□□ -0.58
DNMT1-219	ENST00000589349	SCTR	P47872	440 aa		11.42	□□□□□ -0.58
DNMT1-219	ENST00000589349	RELB	Q01201	579 aa		11.42	□□□□□ -0.58
DNMT1-219	ENST00000589349	USP4	Q13107	963 aa		11.42	□□□□□ -0.58
DNMT1-219	ENST00000589349	AGBL1	Q96MI9	1066 aa		11.42	□□□□□ -0.58
DNMT1-219	ENST00000589349	BLM	P54132	1417 aa	Predicted RBP	11.42	□□□□□ -0.58
DNMT1-219	ENST00000589349	SSH2	Q76I76	1423 aa		11.42	□□□□□ -0.58
DNMT1-219	ENST00000589349	ATP5J2-PTCD1	G3V325	749 aa		11.41	□□□□□ -0.58
DNMT1-219	ENST00000589349	SPINT1	O43278	529 aa		11.41	□□□□□ -0.58
DNMT1-219	ENST00000589349	TRIM37	O94972	964 aa		11.41	□□□□□ -0.58
DNMT1-219	ENST00000589349	SKI	P12755	728 aa		11.41	□□□□□ -0.58
DNMT1-219	ENST00000589349	CDCA7	Q9BWT1	371 aa	Predicted RBP	11.41	□□□□□ -0.58
DNMT1-219	ENST00000589349	CPD	O75976	1380 aa		11.41	□□□□□ -0.58
DNMT1-219	ENST00000589349	USP47	Q96K76	1375 aa		11.41	□□□□□ -0.58
DNMT1-219	ENST00000589349	PHRF1	Q9P1Y6	1649 aa	Known RBP	11.4	□□□□□ -0.58
DNMT1-219	ENST00000589349	PIK3CD	O00329	1044 aa		11.4	□□□□□ -0.58
DNMT1-219	ENST00000589349	PTGIR	P43119	386 aa		11.4	□□□□□ -0.58

Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms