RNA–Protein interactions for RNA: ENST00000588131.1

VMP1-207, Transcript of vacuole membrane protein 1, humanhuman

TSL 2

Gene VMP1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-207ENST00000588131 KLHDC4Q8TBB5 520 aa14.05□□□□□ -0.16
VMP1-207ENST00000588131 CCDC85AQ96PX6 553 aaPredicted RBP14.05□□□□□ -0.16
VMP1-207ENST00000588131 CHMP3Q9Y3E7 222 aa14.05□□□□□ -0.16
VMP1-207ENST00000588131 TNRC6CQ9HCJ0 1690 aaKnown RBP14.04□□□□□ -0.16
VMP1-207ENST00000588131 APBB1O00213 710 aa14.04□□□□□ -0.16
VMP1-207ENST00000588131 SMARCA5O60264 1052 aaPredicted RBP14.04□□□□□ -0.16
VMP1-207ENST00000588131 PDE4AP27815 886 aa14.04□□□□□ -0.16
VMP1-207ENST00000588131 TM4SF1P30408 202 aa14.04□□□□□ -0.16
VMP1-207ENST00000588131 DDR1Q08345 913 aa14.04□□□□□ -0.16
VMP1-207ENST00000588131 FAM161AQ3B820 660 aa14.04□□□□□ -0.16
VMP1-207ENST00000588131 CHD1LQ86WJ1 897 aa14.04□□□□□ -0.16
VMP1-207ENST00000588131 NBPF5PQ86XG9 351 aaPredicted RBP14.04□□□□□ -0.16
VMP1-207ENST00000588131 CCDC24Q8N4L8 307 aa14.04□□□□□ -0.16
VMP1-207ENST00000588131 TTLL11Q8NHH1 800 aa14.04□□□□□ -0.16
VMP1-207ENST00000588131 NYXQ9GZU5 481 aa14.04□□□□□ -0.16
VMP1-207ENST00000588131 NOP58Q9Y2X3 529 aaKnown RBP14.04□□□□□ -0.16
VMP1-207ENST00000588131 PTPN12Q05209 780 aaKnown RBP14.03□□□□□ -0.16
VMP1-207ENST00000588131 C3orf67Q6ZVT6 689 aa14.03□□□□□ -0.16
VMP1-207ENST00000588131 LNPKQ9C0E8 428 aa14.03□□□□□ -0.16
VMP1-207ENST00000588131 COPRSQ9NQ92 184 aa14.03□□□□□ -0.16
VMP1-207ENST00000588131 POLRMTO00411 1230 aaKnown RBP14.02□□□□□ -0.17
VMP1-207ENST00000588131 GTF2E1P29083 439 aaPredicted RBP14.02□□□□□ -0.17
VMP1-207ENST00000588131 RGS3P49796 1198 aa14.02□□□□□ -0.17
VMP1-207ENST00000588131 SLC10A5Q5PT55 438 aa14.02□□□□□ -0.17
VMP1-207ENST00000588131 TPTE2Q6XPS3 522 aa14.02□□□□□ -0.17
VMP1-207ENST00000588131 ZNF594Q96JF6 807 aaPredicted RBP14.02□□□□□ -0.17
VMP1-207ENST00000588131 SIL1Q9H173 461 aa14.02□□□□□ -0.17
VMP1-207ENST00000588131 GREM2Q9H772 168 aa14.02□□□□□ -0.17
VMP1-207ENST00000588131 NRXN2Q9P2S2 1712 aa14.01□□□□□ -0.17
VMP1-207ENST00000588131 COL4A1P02462 1669 aa14.01□□□□□ -0.17
VMP1-207ENST00000588131 SERPINB2P05120 415 aa14.01□□□□□ -0.17
VMP1-207ENST00000588131 MSL1Q68DK7 614 aa14.01□□□□□ -0.17
VMP1-207ENST00000588131 PRR5LQ6MZQ0 368 aa14.01□□□□□ -0.17
VMP1-207ENST00000588131 NLGN1Q8N2Q7 840 aa14.01□□□□□ -0.17
VMP1-207ENST00000588131 PDGFDQ9GZP0 370 aaPredicted RBP14.01□□□□□ -0.17
VMP1-207ENST00000588131 LRP5O75197 1615 aa14.01□□□□□ -0.17
VMP1-207ENST00000588131 RAB11FIP3O75154 756 aa14□□□□□ -0.17
VMP1-207ENST00000588131 ITGA6P23229 1130 aa14□□□□□ -0.17
VMP1-207ENST00000588131 OS9Q13438 667 aaPredicted RBP14□□□□□ -0.17
VMP1-207ENST00000588131 CCDC57Q2TAC2 916 aa14□□□□□ -0.17
VMP1-207ENST00000588131 CNBD1Q8NA66 436 aa14□□□□□ -0.17
VMP1-207ENST00000588131 RHPN1Q8TCX5 695 aa14□□□□□ -0.17
VMP1-207ENST00000588131 LRRCC1Q9C099 1032 aa14□□□□□ -0.17
VMP1-207ENST00000588131 BCL11AQ9H165 835 aa14□□□□□ -0.17
VMP1-207ENST00000588131 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP14□□□□□ -0.17
VMP1-207ENST00000588131 RIC1Q4ADV7 1423 aa13.99□□□□□ -0.17
VMP1-207ENST00000588131 SASH1O94885 1247 aa13.99□□□□□ -0.17
VMP1-207ENST00000588131 HSP90B1P14625 803 aaKnown RBP13.99□□□□□ -0.17
VMP1-207ENST00000588131 G3BP1Q13283 466 aaKnown RBP eCLIP13.99□□□□□ -0.17
VMP1-207ENST00000588131 IFIT5Q13325 482 aaKnown RBP13.99□□□□□ -0.17
VMP1-207ENST00000588131 SF3B3Q15393 1217 aaKnown RBP13.99□□□□□ -0.17
VMP1-207ENST00000588131 HSP90AB4PQ58FF6 505 aa13.99□□□□□ -0.17
VMP1-207ENST00000588131 C16orf71Q8IYS4 520 aaPredicted RBP13.99□□□□□ -0.17
VMP1-207ENST00000588131 IL1RAPL2Q9NP60 686 aa13.99□□□□□ -0.17
VMP1-207ENST00000588131 SPEF2Q9C093 1822 aa13.99□□□□□ -0.17
VMP1-207ENST00000588131 RTL9Q8NET4 1388 aa13.98□□□□□ -0.17
VMP1-207ENST00000588131 ANKRD18BA2A2Z9 1011 aa13.98□□□□□ -0.17
VMP1-207ENST00000588131 NPHP1O15259 732 aa13.98□□□□□ -0.17
VMP1-207ENST00000588131 MMP10P09238 476 aa13.98□□□□□ -0.17
VMP1-207ENST00000588131 CCDC152Q4G0S7 254 aa13.98□□□□□ -0.17
VMP1-207ENST00000588131 LRRC24Q50LG9 513 aa13.98□□□□□ -0.17
VMP1-207ENST00000588131 ATG9AQ7Z3C6 839 aa13.98□□□□□ -0.17
VMP1-207ENST00000588131 OTUD7AQ8TE49 926 aaPredicted RBP13.98□□□□□ -0.17
VMP1-207ENST00000588131 KIF1BPQ96EK5 621 aa13.98□□□□□ -0.17
VMP1-207ENST00000588131 PUS3Q9BZE2 481 aaKnown RBP13.98□□□□□ -0.17
VMP1-207ENST00000588131 SEC31BQ9NQW1 1179 aa13.98□□□□□ -0.17
VMP1-207ENST00000588131 ANKRD31Q8N7Z5 1873 aa13.97□□□□□ -0.17
VMP1-207ENST00000588131 EYA2O00167 538 aa13.97□□□□□ -0.17
VMP1-207ENST00000588131 ERC1Q8IUD2 1116 aa13.97□□□□□ -0.17
VMP1-207ENST00000588131 ZBTB47Q9UFB7 747 aaPredicted RBP13.97□□□□□ -0.17
VMP1-207ENST00000588131 TAF1P21675 1872 aa13.97□□□□□ -0.17
VMP1-207ENST00000588131 CIAO1O76071 339 aa13.96□□□□□ -0.17
VMP1-207ENST00000588131 ST5P78524 1137 aa13.96□□□□□ -0.17
VMP1-207ENST00000588131 TAF7LQ5H9L4 462 aa13.96□□□□□ -0.17
VMP1-207ENST00000588131 NLRP3Q96P20 1036 aa13.96□□□□□ -0.17
VMP1-207ENST00000588131 PARP3Q9Y6F1 533 aa13.96□□□□□ -0.17
VMP1-207ENST00000588131 SALL3Q9BXA9 1300 aa13.95□□□□□ -0.18
VMP1-207ENST00000588131 TFCP2Q12800 502 aa13.95□□□□□ -0.18
VMP1-207ENST00000588131 PLEKHM2Q8IWE5 1019 aa13.95□□□□□ -0.18
VMP1-207ENST00000588131 IL15P40933 162 aaPredicted RBP13.94□□□□□ -0.18
VMP1-207ENST00000588131 FBXO3Q9UK99 471 aa13.94□□□□□ -0.18
VMP1-207ENST00000588131 U3KPZ7 1027 aaPredicted RBP13.94□□□□□ -0.18
VMP1-207ENST00000588131 SRCAPQ6ZRS2 3230 aa13.94□□□□□ -0.18
VMP1-207ENST00000588131 A0A1B0GUL6 1792 aa13.94□□□□□ -0.18
VMP1-207ENST00000588131 COL11A2P13942 1736 aaPredicted RBP13.93□□□□□ -0.18
VMP1-207ENST00000588131 R3HDM1Q15032 1099 aaKnown RBP13.93□□□□□ -0.18
VMP1-207ENST00000588131 LDHAL6AQ6ZMR3 332 aa13.93□□□□□ -0.18
VMP1-207ENST00000588131 CELF1Q92879 486 aaKnown RBP13.93□□□□□ -0.18
VMP1-207ENST00000588131 EAF2Q96CJ1 260 aaPredicted RBP13.93□□□□□ -0.18
VMP1-207ENST00000588131 CNNM1Q9NRU3 951 aa13.93□□□□□ -0.18
VMP1-207ENST00000588131 RIPOR2Q9Y4F9 1068 aa13.93□□□□□ -0.18
VMP1-207ENST00000588131 ZNF609O15014 1411 aa13.92□□□□□ -0.18
VMP1-207ENST00000588131 CRY2Q49AN0 593 aa13.92□□□□□ -0.18
VMP1-207ENST00000588131 TNNI3KQ59H18 835 aa13.92□□□□□ -0.18
VMP1-207ENST00000588131 AACSQ86V21 672 aa13.92□□□□□ -0.18
VMP1-207ENST00000588131 CLASRPQ8N2M8 674 aaKnown RBP13.92□□□□□ -0.18
VMP1-207ENST00000588131 SLC16A10Q8TF71 515 aa13.92□□□□□ -0.18
VMP1-207ENST00000588131 CDC5LQ99459 802 aaKnown RBP13.92□□□□□ -0.18
VMP1-207ENST00000588131 TLR7Q9NYK1 1049 aaKnown RBP13.92□□□□□ -0.18
VMP1-207ENST00000588131 FPGT-TNNI3KV9GXZ4 949 aa13.92□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 66 ms