RNA–Protein interactions for RNA: ENST00000586558.5

DDX39A-204, Transcript of DExD-box helicase 39A, humanhuman

TSL 2

Gene DDX39A, Length 1,127 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX39A-204ENST00000586558 RTL9Q8NET4 1388 aa24.11■■□□□ 1.45
DDX39A-204ENST00000586558 DCAF8L1A6NGE4 600 aa24.1■■□□□ 1.45
DDX39A-204ENST00000586558 PLIN1O60240 522 aa24.1■■□□□ 1.45
DDX39A-204ENST00000586558 GNAI3P08754 354 aa24.1■■□□□ 1.45
DDX39A-204ENST00000586558 UBTFL1P0CB47 393 aaPredicted RBP24.1■■□□□ 1.45
DDX39A-204ENST00000586558 PRPF40BQ6NWY9 871 aaKnown RBP24.1■■□□□ 1.45
DDX39A-204ENST00000586558 TTLL11Q8NHH1 800 aa24.1■■□□□ 1.45
DDX39A-204ENST00000586558 BCS1LQ9Y276 419 aa24.1■■□□□ 1.45
DDX39A-204ENST00000586558 ITPRIPQ8IWB1 547 aa24.09■■□□□ 1.45
DDX39A-204ENST00000586558 CSF1RP07333 972 aa24.08■■□□□ 1.45
DDX39A-204ENST00000586558 FOXO4P98177 505 aa24.08■■□□□ 1.45
DDX39A-204ENST00000586558 GPR162Q16538 588 aa24.08■■□□□ 1.45
DDX39A-204ENST00000586558 PELP1Q8IZL8 1130 aaKnown RBP24.08■■□□□ 1.45
DDX39A-204ENST00000586558 PANK1Q8TE04 598 aa24.08■■□□□ 1.45
DDX39A-204ENST00000586558 SUCLG2Q96I99 432 aa24.08■■□□□ 1.45
DDX39A-204ENST00000586558 RRP1P56182 461 aaKnown RBP24.07■■□□□ 1.44
DDX39A-204ENST00000586558 GRAPQ13588 217 aa24.07■■□□□ 1.44
DDX39A-204ENST00000586558 GRAPLQ8TC17 118 aaPredicted RBP24.07■■□□□ 1.44
DDX39A-204ENST00000586558 MEIS3Q99687 375 aa24.07■■□□□ 1.44
DDX39A-204ENST00000586558 WWC3Q9ULE0 1092 aa24.07■■□□□ 1.44
DDX39A-204ENST00000586558 GRIN3BO60391 1043 aa24.06■■□□□ 1.44
DDX39A-204ENST00000586558 BBOX1O75936 387 aa24.06■■□□□ 1.44
DDX39A-204ENST00000586558 YBX3P16989 372 aaKnown RBP eCLIP24.06■■□□□ 1.44
DDX39A-204ENST00000586558 TMC4Q7Z404 712 aa24.06■■□□□ 1.44
DDX39A-204ENST00000586558 MYH3P11055 1940 aa24.06■■□□□ 1.44
DDX39A-204ENST00000586558 EPHA10Q5JZY3 1008 aa24.05■■□□□ 1.44
DDX39A-204ENST00000586558 SOGA3Q5TF21 947 aa24.05■■□□□ 1.44
DDX39A-204ENST00000586558 KAZALD1Q96I82 304 aa24.05■■□□□ 1.44
DDX39A-204ENST00000586558 MVPQ14764 893 aaKnown RBP24.04■■□□□ 1.44
DDX39A-204ENST00000586558 RABL6Q3YEC7 729 aaPredicted RBP24.04■■□□□ 1.44
DDX39A-204ENST00000586558 LMBR1LQ6UX01 489 aa24.04■■□□□ 1.44
DDX39A-204ENST00000586558 CDC5LQ99459 802 aaKnown RBP24.04■■□□□ 1.44
DDX39A-204ENST00000586558 BICC1Q9H694 974 aaKnown RBP24.04■■□□□ 1.44
DDX39A-204ENST00000586558 GREM2Q9H772 168 aa24.04■■□□□ 1.44
DDX39A-204ENST00000586558 ARFGEF1Q9Y6D6 1849 aa24.04■■□□□ 1.44
DDX39A-204ENST00000586558 PPEF1O14829 653 aaPredicted RBP24.03■■□□□ 1.44
DDX39A-204ENST00000586558 CC2D2BQ6DHV5 1058 aa24.03■■□□□ 1.44
DDX39A-204ENST00000586558 C7orf43Q8WVR3 580 aa24.03■■□□□ 1.44
DDX39A-204ENST00000586558 CCDC85AQ96PX6 553 aaPredicted RBP24.03■■□□□ 1.44
DDX39A-204ENST00000586558 CHMP4BQ9H444 224 aaKnown RBP24.03■■□□□ 1.44
DDX39A-204ENST00000586558 DDX19BQ9UMR2 479 aa24.03■■□□□ 1.44
DDX39A-204ENST00000586558 RPS8P62241 208 aaKnown RBP24.02■■□□□ 1.44
DDX39A-204ENST00000586558 FAM161AQ3B820 660 aa24.02■■□□□ 1.44
DDX39A-204ENST00000586558 ANKRD44Q8N8A2 993 aa24.02■■□□□ 1.44
DDX39A-204ENST00000586558 SEC31BQ9NQW1 1179 aa24.02■■□□□ 1.44
DDX39A-204ENST00000586558 SLX4Q8IY92 1834 aa24.02■■□□□ 1.44
DDX39A-204ENST00000586558 ZBTB7BO15156 539 aaPredicted RBP24.01■■□□□ 1.43
DDX39A-204ENST00000586558 GNAI2P04899 355 aa24.01■■□□□ 1.43
DDX39A-204ENST00000586558 ITGA6P23229 1130 aa24.01■■□□□ 1.43
DDX39A-204ENST00000586558 IFIT5Q13325 482 aaKnown RBP24.01■■□□□ 1.43
DDX39A-204ENST00000586558 CELF1Q92879 486 aaKnown RBP24.01■■□□□ 1.43
DDX39A-204ENST00000586558 TMX4Q9H1E5 349 aaPredicted RBP24.01■■□□□ 1.43
DDX39A-204ENST00000586558 COG6Q9Y2V7 657 aa24.01■■□□□ 1.43
DDX39A-204ENST00000586558 CHMP3Q9Y3E7 222 aa24.01■■□□□ 1.43
DDX39A-204ENST00000586558 LRRFIP2Q9Y608 721 aaKnown RBP24.01■■□□□ 1.43
DDX39A-204ENST00000586558 ANKRD18BA2A2Z9 1011 aa24■■□□□ 1.43
DDX39A-204ENST00000586558 C21orf2O43822 256 aa24■■□□□ 1.43
DDX39A-204ENST00000586558 GRIPAP1Q4V328 841 aa24■■□□□ 1.43
DDX39A-204ENST00000586558 C20orf194Q5TEA3 1177 aa24■■□□□ 1.43
DDX39A-204ENST00000586558 ANKRD18AQ8IVF6 992 aa24■■□□□ 1.43
DDX39A-204ENST00000586558 ATP6V0A2Q9Y487 856 aa24■■□□□ 1.43
DDX39A-204ENST00000586558 CCDC57Q2TAC2 916 aa23.99■■□□□ 1.43
DDX39A-204ENST00000586558 CCDC93Q567U6 631 aa23.99■■□□□ 1.43
DDX39A-204ENST00000586558 SP8Q8IXZ3 490 aa23.98■■□□□ 1.43
DDX39A-204ENST00000586558 ZNF219Q9P2Y4 722 aaPredicted RBP23.98■■□□□ 1.43
DDX39A-204ENST00000586558 IGHMBP2P38935 993 aaKnown RBP23.97■■□□□ 1.43
DDX39A-204ENST00000586558 CACNA1SQ13698 1873 aa23.97■■□□□ 1.43
DDX39A-204ENST00000586558 RTKN2Q8IZC4 609 aa23.97■■□□□ 1.43
DDX39A-204ENST00000586558 MTX1Q13505 466 aa23.96■■□□□ 1.43
DDX39A-204ENST00000586558 BSDC1Q9NW68 430 aaPredicted RBP23.96■■□□□ 1.43
DDX39A-204ENST00000586558 ARHGAP27Q6ZUM4 889 aa23.95■■□□□ 1.42
DDX39A-204ENST00000586558 LRRC37AA6NMS7 1700 aa23.95■■□□□ 1.42
DDX39A-204ENST00000586558 COL4A1P02462 1669 aa23.95■■□□□ 1.42
DDX39A-204ENST00000586558 SNED1Q8TER0 1413 aa23.94■■□□□ 1.42
DDX39A-204ENST00000586558 LTBP3Q9NS15 1303 aa23.94■■□□□ 1.42
DDX39A-204ENST00000586558 TAF7LQ5H9L4 462 aa23.94■■□□□ 1.42
DDX39A-204ENST00000586558 MPHOSPH8Q99549 860 aa23.94■■□□□ 1.42
DDX39A-204ENST00000586558 SUPT16HQ9Y5B9 1047 aaKnown RBP23.94■■□□□ 1.42
DDX39A-204ENST00000586558 ZBTB40Q9NUA8 1239 aa23.93■■□□□ 1.42
DDX39A-204ENST00000586558 TAF1P21675 1872 aa23.92■■□□□ 1.42
DDX39A-204ENST00000586558 NFKBIEO00221 500 aa23.92■■□□□ 1.42
DDX39A-204ENST00000586558 OLFM4Q6UX06 510 aa23.92■■□□□ 1.42
DDX39A-204ENST00000586558 PSMD1Q99460 953 aa23.92■■□□□ 1.42
DDX39A-204ENST00000586558 FKBP4Q02790 459 aaKnown RBP eCLIP23.91■■□□□ 1.42
DDX39A-204ENST00000586558 TAOK3Q9H2K8 898 aa23.91■■□□□ 1.42
DDX39A-204ENST00000586558 GOLGB1Q14789 3259 aaKnown RBP23.9■■□□□ 1.42
DDX39A-204ENST00000586558 LDHAL6AQ6ZMR3 332 aa23.9■■□□□ 1.42
DDX39A-204ENST00000586558 MPNDQ8N594 471 aa23.9■■□□□ 1.42
DDX39A-204ENST00000586558 SRGAP3O43295 1099 aa23.89■■□□□ 1.41
DDX39A-204ENST00000586558 RFX5P48382 616 aaPredicted RBP23.89■■□□□ 1.41
DDX39A-204ENST00000586558 DPP8Q6V1X1 898 aaPredicted RBP23.89■■□□□ 1.41
DDX39A-204ENST00000586558 PODXL2Q9NZ53 605 aa23.89■■□□□ 1.41
DDX39A-204ENST00000586558 MINPP1Q9UNW1 487 aa23.89■■□□□ 1.41
DDX39A-204ENST00000586558 FER1L6Q2WGJ9 1857 aa23.89■■□□□ 1.41
DDX39A-204ENST00000586558 XDHP47989 1333 aa23.88■■□□□ 1.41
DDX39A-204ENST00000586558 CENPBP07199 599 aaPredicted RBP23.88■■□□□ 1.41
DDX39A-204ENST00000586558 SUPT20HQ8NEM7 779 aa23.88■■□□□ 1.41
DDX39A-204ENST00000586558 ZNF594Q96JF6 807 aaPredicted RBP23.88■■□□□ 1.41
DDX39A-204ENST00000586558 RTFDC1Q9BY42 306 aaPredicted RBP23.88■■□□□ 1.41
DDX39A-204ENST00000586558 ANKRD2Q9GZV1 360 aa23.88■■□□□ 1.41
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms