RNA–Protein interactions for RNA: ENST00000585740.5

LIG3-204, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 887 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-204ENST00000585740 CCDC8Q9H0W5 538 aaPredicted RBP13.63□□□□□ -0.23
LIG3-204ENST00000585740 CDHR2Q9BYE9 1310 aa13.63□□□□□ -0.23
LIG3-204ENST00000585740 CD2BP2O95400 341 aaKnown RBP13.62□□□□□ -0.23
LIG3-204ENST00000585740 DEKP35659 375 aaKnown RBP13.62□□□□□ -0.23
LIG3-204ENST00000585740 JARID2Q92833 1246 aaPredicted RBP13.62□□□□□ -0.23
LIG3-204ENST00000585740 LSG1Q9H089 658 aaKnown RBP13.62□□□□□ -0.23
LIG3-204ENST00000585740 CHMP3Q9Y3E7 222 aa13.62□□□□□ -0.23
LIG3-204ENST00000585740 ZNF831Q5JPB2 1677 aa13.62□□□□□ -0.23
LIG3-204ENST00000585740 RREB1Q92766 1687 aa13.62□□□□□ -0.23
LIG3-204ENST00000585740 DDX11L8A8MPP1 907 aa13.61□□□□□ -0.23
LIG3-204ENST00000585740 EYA2O00167 538 aa13.61□□□□□ -0.23
LIG3-204ENST00000585740 PRIM1P49642 420 aaKnown RBP13.61□□□□□ -0.23
LIG3-204ENST00000585740 NUCB2P80303 420 aa13.61□□□□□ -0.23
LIG3-204ENST00000585740 TFCP2Q12800 502 aa13.61□□□□□ -0.23
LIG3-204ENST00000585740 RAB3GAP1Q15042 981 aa13.61□□□□□ -0.23
LIG3-204ENST00000585740 ZBTB38Q8NAP3 1195 aaPredicted RBP13.61□□□□□ -0.23
LIG3-204ENST00000585740 KLHDC4Q8TBB5 520 aa13.61□□□□□ -0.23
LIG3-204ENST00000585740 SMARCC1Q92922 1105 aaPredicted RBP13.61□□□□□ -0.23
LIG3-204ENST00000585740 SYTL4Q96C24 671 aaPredicted RBP13.61□□□□□ -0.23
LIG3-204ENST00000585740 GBP4Q96PP9 640 aa13.61□□□□□ -0.23
LIG3-204ENST00000585740 SNRKQ9NRH2 765 aa13.61□□□□□ -0.23
LIG3-204ENST00000585740 SPEF2Q9C093 1822 aa13.61□□□□□ -0.23
LIG3-204ENST00000585740 THSD7AQ9UPZ6 1657 aa13.6□□□□□ -0.23
LIG3-204ENST00000585740 MCM4P33991 863 aa13.6□□□□□ -0.23
LIG3-204ENST00000585740 NEK4P51957 841 aa13.6□□□□□ -0.23
LIG3-204ENST00000585740 CCDC57Q2TAC2 916 aa13.6□□□□□ -0.23
LIG3-204ENST00000585740 CWC27Q6UX04 472 aaKnown RBP13.6□□□□□ -0.23
LIG3-204ENST00000585740 SPON1Q9HCB6 807 aa13.6□□□□□ -0.23
LIG3-204ENST00000585740 ZNF330Q9Y3S2 320 aaPredicted RBP13.6□□□□□ -0.23
LIG3-204ENST00000585740 SLC4A9Q96Q91 983 aa13.59□□□□□ -0.23
LIG3-204ENST00000585740 FSD1Q9BTV5 496 aa13.59□□□□□ -0.23
LIG3-204ENST00000585740 BOLA2Q9H3K6 86 aa13.59□□□□□ -0.23
LIG3-204ENST00000585740 KCNQ2O43526 872 aa13.58□□□□□ -0.24
LIG3-204ENST00000585740 CSF1RP07333 972 aa13.58□□□□□ -0.24
LIG3-204ENST00000585740 ATG9AQ7Z3C6 839 aa13.58□□□□□ -0.24
LIG3-204ENST00000585740 MARCH10Q8NA82 808 aaPredicted RBP13.58□□□□□ -0.24
LIG3-204ENST00000585740 PPIL4Q8WUA2 492 aaKnown RBP eCLIP13.58□□□□□ -0.24
LIG3-204ENST00000585740 KCNB2Q92953 911 aa13.58□□□□□ -0.24
LIG3-204ENST00000585740 AK7Q96M32 723 aa13.58□□□□□ -0.24
LIG3-204ENST00000585740 TLR7Q9NYK1 1049 aaKnown RBP13.58□□□□□ -0.24
LIG3-204ENST00000585740 DBNLQ9UJU6 430 aaKnown RBP13.58□□□□□ -0.24
LIG3-204ENST00000585740 PALD1Q9ULE6 856 aa13.58□□□□□ -0.24
LIG3-204ENST00000585740 AKAP2Q9Y2D5 859 aa13.58□□□□□ -0.24
LIG3-204ENST00000585740 ZBTB1Q9Y2K1 713 aa13.58□□□□□ -0.24
LIG3-204ENST00000585740 ZNF609O15014 1411 aa13.57□□□□□ -0.24
LIG3-204ENST00000585740 GSE1Q14687 1217 aa13.57□□□□□ -0.24
LIG3-204ENST00000585740 TAF7LQ5H9L4 462 aa13.57□□□□□ -0.24
LIG3-204ENST00000585740 NLRP10Q86W26 655 aa13.57□□□□□ -0.24
LIG3-204ENST00000585740 DZIP3Q86Y13 1208 aaKnown RBP13.57□□□□□ -0.24
LIG3-204ENST00000585740 INTS4Q96HW7 963 aaKnown RBP13.57□□□□□ -0.24
LIG3-204ENST00000585740 HAUS7Q99871 368 aa13.57□□□□□ -0.24
LIG3-204ENST00000585740 TM6SF1Q9BZW5 370 aa13.57□□□□□ -0.24
LIG3-204ENST00000585740 CCDC87Q9NVE4 849 aa13.57□□□□□ -0.24
LIG3-204ENST00000585740 CEP126Q9P2H0 1117 aa13.57□□□□□ -0.24
LIG3-204ENST00000585740 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP13.57□□□□□ -0.24
LIG3-204ENST00000585740 CCDC171Q6TFL3 1326 aa13.57□□□□□ -0.24
LIG3-204ENST00000585740 HSP90B1P14625 803 aaKnown RBP13.56□□□□□ -0.24
LIG3-204ENST00000585740 NMIQ13287 307 aaPredicted RBP13.56□□□□□ -0.24
LIG3-204ENST00000585740 IFIT5Q13325 482 aaKnown RBP13.56□□□□□ -0.24
LIG3-204ENST00000585740 CUL4AQ13619 759 aa13.56□□□□□ -0.24
LIG3-204ENST00000585740 TNPO1Q92973 898 aaKnown RBP13.56□□□□□ -0.24
LIG3-204ENST00000585740 ARXQ96QS3 562 aa13.56□□□□□ -0.24
LIG3-204ENST00000585740 DBNDD2Q9BQY9 259 aa13.56□□□□□ -0.24
LIG3-204ENST00000585740 IL25Q9H293 177 aa13.56□□□□□ -0.24
LIG3-204ENST00000585740 SNX14Q9Y5W7 946 aa13.56□□□□□ -0.24
LIG3-204ENST00000585740 LOC102724428A0A0B4J2F2 783 aa13.55□□□□□ -0.24
LIG3-204ENST00000585740 GOLGA6L22H0YM25 854 aa13.55□□□□□ -0.24
LIG3-204ENST00000585740 ZKSCAN1P17029 563 aaPredicted RBP13.55□□□□□ -0.24
LIG3-204ENST00000585740 ATP6V1AP38606 617 aa13.55□□□□□ -0.24
LIG3-204ENST00000585740 EIF5P55010 431 aaKnown RBP13.55□□□□□ -0.24
LIG3-204ENST00000585740 SIK1P57059 783 aa13.55□□□□□ -0.24
LIG3-204ENST00000585740 LRRFIP1Q32MZ4 808 aaKnown RBP13.55□□□□□ -0.24
LIG3-204ENST00000585740 RNF20Q5VTR2 975 aa13.55□□□□□ -0.24
LIG3-204ENST00000585740 CLEC17AQ6ZS10 378 aa13.55□□□□□ -0.24
LIG3-204ENST00000585740 TMX3Q96JJ7 454 aa13.55□□□□□ -0.24
LIG3-204ENST00000585740 COL5A3P25940 1745 aaPredicted RBP13.55□□□□□ -0.24
LIG3-204ENST00000585740 PALLDQ8WX93 1383 aa13.55□□□□□ -0.24
LIG3-204ENST00000585740 MED23Q9ULK4 1368 aa13.55□□□□□ -0.24
LIG3-204ENST00000585740 ANKRD18BA2A2Z9 1011 aa13.54□□□□□ -0.24
LIG3-204ENST00000585740 PDE8AO60658 829 aa13.54□□□□□ -0.24
LIG3-204ENST00000585740 KCNJ4P48050 445 aa13.54□□□□□ -0.24
LIG3-204ENST00000585740 HLFQ16534 295 aa13.54□□□□□ -0.24
LIG3-204ENST00000585740 PARP10Q53GL7 1025 aa13.54□□□□□ -0.24
LIG3-204ENST00000585740 ZNF34Q8IZ26 560 aa13.54□□□□□ -0.24
LIG3-204ENST00000585740 ZNF784Q8NCA9 323 aaPredicted RBP13.54□□□□□ -0.24
LIG3-204ENST00000585740 MAP4K1Q92918 833 aa13.54□□□□□ -0.24
LIG3-204ENST00000585740 NEUROD6Q96NK8 337 aa13.54□□□□□ -0.24
LIG3-204ENST00000585740 FOXD4L1Q9NU39 408 aa13.54□□□□□ -0.24
LIG3-204ENST00000585740 HMG20BQ9P0W2 317 aa13.54□□□□□ -0.24
LIG3-204ENST00000585740 ABCC12Q96J65 1359 aa13.54□□□□□ -0.24
LIG3-204ENST00000585740 LAMB2P55268 1798 aa13.53□□□□□ -0.24
LIG3-204ENST00000585740 BCORQ6W2J9 1755 aa13.53□□□□□ -0.24
LIG3-204ENST00000585740 IRS4O14654 1257 aaPredicted RBP13.53□□□□□ -0.24
LIG3-204ENST00000585740 RGL2O15211 777 aa13.53□□□□□ -0.24
LIG3-204ENST00000585740 PSMA5P28066 241 aa13.53□□□□□ -0.24
LIG3-204ENST00000585740 CTSWP56202 376 aa13.53□□□□□ -0.24
LIG3-204ENST00000585740 NECTIN1Q15223 517 aa13.53□□□□□ -0.24
LIG3-204ENST00000585740 SKOR2Q2VWA4 1001 aaPredicted RBP13.53□□□□□ -0.24
LIG3-204ENST00000585740 LRRC24Q50LG9 513 aa13.53□□□□□ -0.24
LIG3-204ENST00000585740 KBTBD3Q8NAB2 608 aa13.53□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms