RNA–Protein interactions for RNA: ENST00000585121.5

SS18-225, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-225ENST00000585121 VPS33BQ9H267 617 aa15.85■□□□□ 0.13
SS18-225ENST00000585121 FZD9O00144 591 aa15.84■□□□□ 0.13
SS18-225ENST00000585121 DICER1Q9UPY3 1922 aaKnown RBP15.84■□□□□ 0.13
SS18-225ENST00000585121 POTECB2RU33 542 aa15.84■□□□□ 0.13
SS18-225ENST00000585121 PPIP5K2O43314 1243 aa15.84■□□□□ 0.13
SS18-225ENST00000585121 NIM1KQ8IY84 436 aa15.84■□□□□ 0.13
SS18-225ENST00000585121 L3MBTL3Q96JM7 780 aaPredicted RBP15.84■□□□□ 0.13
SS18-225ENST00000585121 SNED1Q8TER0 1413 aa15.83■□□□□ 0.12
SS18-225ENST00000585121 PDE8AO60658 829 aa15.83■□□□□ 0.12
SS18-225ENST00000585121 VAMP4O75379 141 aa15.83■□□□□ 0.12
SS18-225ENST00000585121 FLIIQ13045 1269 aa15.83■□□□□ 0.12
SS18-225ENST00000585121 FKBP5Q13451 457 aaPredicted RBP15.83■□□□□ 0.12
SS18-225ENST00000585121 CCDC152Q4G0S7 254 aa15.83■□□□□ 0.12
SS18-225ENST00000585121 ZNF541Q9H0D2 1346 aa15.82■□□□□ 0.12
SS18-225ENST00000585121 CEP350Q5VT06 3117 aa15.82■□□□□ 0.12
SS18-225ENST00000585121 WDR90Q96KV7 1748 aa15.82■□□□□ 0.12
SS18-225ENST00000585121 G2E3Q7L622 706 aa15.82■□□□□ 0.12
SS18-225ENST00000585121 GPC2Q8N158 579 aa15.82■□□□□ 0.12
SS18-225ENST00000585121 RTFDC1Q9BY42 306 aaPredicted RBP15.82■□□□□ 0.12
SS18-225ENST00000585121 HACL1Q9UJ83 578 aa15.82■□□□□ 0.12
SS18-225ENST00000585121 GJA3Q9Y6H8 435 aa15.82■□□□□ 0.12
SS18-225ENST00000585121 RPS8P62241 208 aaKnown RBP15.81■□□□□ 0.12
SS18-225ENST00000585121 AOC3Q16853 763 aa15.81■□□□□ 0.12
SS18-225ENST00000585121 CELF1Q92879 486 aaKnown RBP15.8■□□□□ 0.12
SS18-225ENST00000585121 SPINK5Q9NQ38 1064 aaPredicted RBP15.8■□□□□ 0.12
SS18-225ENST00000585121 IGKV5-2P06315 115 aa15.79■□□□□ 0.12
SS18-225ENST00000585121 LMOD1P29536 600 aaPredicted RBP15.79■□□□□ 0.12
SS18-225ENST00000585121 CHADLQ6NUI6 762 aa15.79■□□□□ 0.12
SS18-225ENST00000585121 SLC51AQ86UW1 340 aa15.79■□□□□ 0.12
SS18-225ENST00000585121 DNAAF4Q8WXU2 420 aa15.79■□□□□ 0.12
SS18-225ENST00000585121 JARID2Q92833 1246 aaPredicted RBP15.79■□□□□ 0.12
SS18-225ENST00000585121 TAF1DQ9H5J8 278 aaPredicted RBP15.79■□□□□ 0.12
SS18-225ENST00000585121 CDHR2Q9BYE9 1310 aa15.79■□□□□ 0.12
SS18-225ENST00000585121 NEURL1BA8MQ27 555 aa15.78■□□□□ 0.12
SS18-225ENST00000585121 CCER2I3L3R5 266 aa15.78■□□□□ 0.12
SS18-225ENST00000585121 KIAA2012Q0VF49 1180 aa15.78■□□□□ 0.12
SS18-225ENST00000585121 CWF19L2Q2TBE0 894 aaKnown RBP15.78■□□□□ 0.12
SS18-225ENST00000585121 EAPPQ56P03 285 aaPredicted RBP15.78■□□□□ 0.12
SS18-225ENST00000585121 PNMA8AQ86V59 439 aaPredicted RBP15.78■□□□□ 0.12
SS18-225ENST00000585121 ZNRF3Q9ULT6 936 aa15.78■□□□□ 0.12
SS18-225ENST00000585121 NSFL1CQ9UNZ2 370 aaKnown RBP15.78■□□□□ 0.12
SS18-225ENST00000585121 EPHX2P34913 555 aa15.78■□□□□ 0.12
SS18-225ENST00000585121 LDHDQ86WU2 507 aa15.78■□□□□ 0.12
SS18-225ENST00000585121 SEC31BQ9NQW1 1179 aa15.78■□□□□ 0.12
SS18-225ENST00000585121 CLEC11AQ9Y240 323 aa15.78■□□□□ 0.12
SS18-225ENST00000585121 E9PSI1 815 aa15.77■□□□□ 0.11
SS18-225ENST00000585121 C6orf229H3BNL8 230 aa15.77■□□□□ 0.11
SS18-225ENST00000585121 CTSWP56202 376 aa15.77■□□□□ 0.11
SS18-225ENST00000585121 WASHC4Q2M389 1173 aa15.77■□□□□ 0.11
SS18-225ENST00000585121 ANKRD18AQ8IVF6 992 aa15.77■□□□□ 0.11
SS18-225ENST00000585121 LINS1Q8NG48 757 aa15.77■□□□□ 0.11
SS18-225ENST00000585121 CCDC85AQ96PX6 553 aaPredicted RBP15.77■□□□□ 0.11
SS18-225ENST00000585121 CDC5LQ99459 802 aaKnown RBP15.77■□□□□ 0.11
SS18-225ENST00000585121 EYA3Q99504 573 aa15.77■□□□□ 0.11
SS18-225ENST00000585121 LAMB2P55268 1798 aa15.76■□□□□ 0.11
SS18-225ENST00000585121 ZNF521Q96K83 1311 aa15.76■□□□□ 0.11
SS18-225ENST00000585121 TNIP1Q15025 636 aa15.76■□□□□ 0.11
SS18-225ENST00000585121 ANKIB1Q9P2G1 1089 aa15.76■□□□□ 0.11
SS18-225ENST00000585121 DDX60Q8IY21 1712 aaKnown RBP15.76■□□□□ 0.11
SS18-225ENST00000585121 H7C1W4 665 aa15.75■□□□□ 0.11
SS18-225ENST00000585121 GPSM2P81274 684 aa15.75■□□□□ 0.11
SS18-225ENST00000585121 GCKRQ14397 625 aa15.75■□□□□ 0.11
SS18-225ENST00000585121 CIAPIN1Q6FI81 312 aa15.75■□□□□ 0.11
SS18-225ENST00000585121 UBE3BQ7Z3V4 1068 aa15.75■□□□□ 0.11
SS18-225ENST00000585121 POTEIP0CG38 1075 aa15.74■□□□□ 0.11
SS18-225ENST00000585121 POTEJP0CG39 1038 aa15.74■□□□□ 0.11
SS18-225ENST00000585121 G3V3G9 751 aa15.73■□□□□ 0.11
SS18-225ENST00000585121 RIMBP2O15034 1052 aa15.73■□□□□ 0.11
SS18-225ENST00000585121 CXCL9Q07325 125 aa15.73■□□□□ 0.11
SS18-225ENST00000585121 DCAF8Q5TAQ9 597 aa15.73■□□□□ 0.11
SS18-225ENST00000585121 TTLL11Q8NHH1 800 aa15.73■□□□□ 0.11
SS18-225ENST00000585121 ZC3H12CQ9C0D7 883 aaKnown RBP15.73■□□□□ 0.11
SS18-225ENST00000585121 GGA1Q9UJY5 639 aa15.73■□□□□ 0.11
SS18-225ENST00000585121 SCN4AP35499 1836 aa15.73■□□□□ 0.11
SS18-225ENST00000585121 TBC1D16Q8TBP0 767 aa15.73■□□□□ 0.11
SS18-225ENST00000585121 BCL2L13Q9BXK5 485 aa15.73■□□□□ 0.11
SS18-225ENST00000585121 PODXL2Q9NZ53 605 aa15.73■□□□□ 0.11
SS18-225ENST00000585121 POLLQ9UGP5 575 aa15.73■□□□□ 0.11
SS18-225ENST00000585121 COL4A5P29400 1685 aa15.73■□□□□ 0.11
SS18-225ENST00000585121 F6X3S4 739 aa15.72■□□□□ 0.11
SS18-225ENST00000585121 RAD17O75943 681 aa15.72■□□□□ 0.11
SS18-225ENST00000585121 UFL1O94874 794 aa15.72■□□□□ 0.11
SS18-225ENST00000585121 HTRA3P83110 453 aa15.72■□□□□ 0.11
SS18-225ENST00000585121 DNAJC5GQ8N7S2 189 aa15.72■□□□□ 0.11
SS18-225ENST00000585121 PLA2G12BQ9BX93 195 aa15.72■□□□□ 0.11
SS18-225ENST00000585121 IGHMBP2P38935 993 aaKnown RBP15.71■□□□□ 0.11
SS18-225ENST00000585121 EPS15P42566 896 aa15.71■□□□□ 0.11
SS18-225ENST00000585121 SCNN1DP51172 638 aa15.71■□□□□ 0.11
SS18-225ENST00000585121 SLFN5Q08AF3 891 aa15.71■□□□□ 0.11
SS18-225ENST00000585121 USP50Q70EL3 339 aaPredicted RBP15.71■□□□□ 0.11
SS18-225ENST00000585121 KLRG1Q96E93 195 aa15.71■□□□□ 0.11
SS18-225ENST00000585121 GREM2Q9H772 168 aa15.71■□□□□ 0.11
SS18-225ENST00000585121 BSDC1Q9NW68 430 aaPredicted RBP15.71■□□□□ 0.11
SS18-225ENST00000585121 CACNA1FO60840 1977 aa15.71■□□□□ 0.1
SS18-225ENST00000585121 XDHP47989 1333 aa15.7■□□□□ 0.1
SS18-225ENST00000585121 ATP2B4P23634 1241 aa15.7■□□□□ 0.1
SS18-225ENST00000585121 GMPSP49915 693 aaPredicted RBP15.7■□□□□ 0.1
SS18-225ENST00000585121 BEND3Q5T5X7 828 aa15.7■□□□□ 0.1
SS18-225ENST00000585121 SLC4A10Q6U841 1118 aa15.7■□□□□ 0.1
SS18-225ENST00000585121 DBNDD1Q9H9R9 158 aa15.7■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms