RNA–Protein interactions for RNA: ENST00000583441.1

SMCHD1-209, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 5

Gene SMCHD1, Length 657 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-209ENST00000583441 HIF1AQ16665 826 aa8□□□□□ -1.13
SMCHD1-209ENST00000583441 EML3Q32P44 896 aa8□□□□□ -1.13
SMCHD1-209ENST00000583441 SHKBP1Q8TBC3 707 aa8□□□□□ -1.13
SMCHD1-209ENST00000583441 UTP4Q969X6 686 aaKnown RBP8□□□□□ -1.13
SMCHD1-209ENST00000583441 MAP3K6O95382 1288 aa7.99□□□□□ -1.13
SMCHD1-209ENST00000583441 HIRAP54198 1017 aaPredicted RBP7.99□□□□□ -1.13
SMCHD1-209ENST00000583441 LCE5AQ5TCM9 118 aa7.99□□□□□ -1.13
SMCHD1-209ENST00000583441 DHX32Q7L7V1 743 aaKnown RBP7.99□□□□□ -1.13
SMCHD1-209ENST00000583441 ZC3HAV1Q7Z2W4 902 aaKnown RBP7.99□□□□□ -1.13
SMCHD1-209ENST00000583441 MAP4K3Q8IVH8 894 aa7.99□□□□□ -1.13
SMCHD1-209ENST00000583441 TRPM4Q8TD43 1214 aa7.99□□□□□ -1.13
SMCHD1-209ENST00000583441 NOD1Q9Y239 953 aa7.99□□□□□ -1.13
SMCHD1-209ENST00000583441 UVSSAQ2YD98 709 aa7.98□□□□□ -1.13
SMCHD1-209ENST00000583441 ZNF648Q5T619 568 aaPredicted RBP7.98□□□□□ -1.13
SMCHD1-209ENST00000583441 CBLL1Q75N03 491 aa7.98□□□□□ -1.13
SMCHD1-209ENST00000583441 SNRKQ9NRH2 765 aa7.98□□□□□ -1.13
SMCHD1-209ENST00000583441 ZNF124Q15973 351 aa7.97□□□□□ -1.13
SMCHD1-209ENST00000583441 IL22RA1Q8N6P7 574 aa7.97□□□□□ -1.13
SMCHD1-209ENST00000583441 KRTAP9-7A8MTY7 169 aa7.96□□□□□ -1.14
SMCHD1-209ENST00000583441 ITGB5P18084 799 aa7.96□□□□□ -1.14
SMCHD1-209ENST00000583441 EIF2AK2P19525 551 aaKnown RBP7.96□□□□□ -1.14
SMCHD1-209ENST00000583441 GPLD1P80108 840 aa7.96□□□□□ -1.14
SMCHD1-209ENST00000583441 SETDB1Q15047 1291 aa7.96□□□□□ -1.14
SMCHD1-209ENST00000583441 HFE2Q6ZVN8 426 aa7.96□□□□□ -1.14
SMCHD1-209ENST00000583441 PRM3Q9NNZ6 103 aa7.96□□□□□ -1.14
SMCHD1-209ENST00000583441 ARID4AP29374 1257 aaPredicted RBP7.95□□□□□ -1.14
SMCHD1-209ENST00000583441 HOXA10P31260 410 aaPredicted RBP7.95□□□□□ -1.14
SMCHD1-209ENST00000583441 VAC14Q08AM6 782 aa7.95□□□□□ -1.14
SMCHD1-209ENST00000583441 GDF6Q6KF10 455 aaPredicted RBP7.95□□□□□ -1.14
SMCHD1-209ENST00000583441 KRTAP5-3Q6L8H2 238 aa7.95□□□□□ -1.14
SMCHD1-209ENST00000583441 KRT25Q7Z3Z0 450 aa7.95□□□□□ -1.14
SMCHD1-209ENST00000583441 TP53INP2Q8IXH6 220 aa7.95□□□□□ -1.14
SMCHD1-209ENST00000583441 TBC1D2BQ9UPU7 963 aa7.95□□□□□ -1.14
SMCHD1-209ENST00000583441 WDR64B1ANS9 1081 aa7.94□□□□□ -1.14
SMCHD1-209ENST00000583441 EPB42P16452 691 aa7.94□□□□□ -1.14
SMCHD1-209ENST00000583441 CLEC10AQ8IUN9 316 aa7.94□□□□□ -1.14
SMCHD1-209ENST00000583441 FBXL18Q96ME1 805 aa7.94□□□□□ -1.14
SMCHD1-209ENST00000583441 TSPAN10Q9H1Z9 355 aaPredicted RBP7.94□□□□□ -1.14
SMCHD1-209ENST00000583441 SEMA3FQ13275 785 aa7.93□□□□□ -1.14
SMCHD1-209ENST00000583441 POTEAQ6S8J7 498 aa7.93□□□□□ -1.14
SMCHD1-209ENST00000583441 ALDH16A1Q8IZ83 802 aa7.93□□□□□ -1.14
SMCHD1-209ENST00000583441 MYRFLQ96LU7 910 aa7.93□□□□□ -1.14
SMCHD1-209ENST00000583441 FAM83CQ9BQN1 747 aa7.93□□□□□ -1.14
SMCHD1-209ENST00000583441 PIM2Q9P1W9 311 aa7.93□□□□□ -1.14
SMCHD1-209ENST00000583441 ZFATQ9P243 1243 aa7.93□□□□□ -1.14
SMCHD1-209ENST00000583441 ACAD11Q709F0 780 aa7.92□□□□□ -1.14
SMCHD1-209ENST00000583441 PLD4Q96BZ4 506 aa7.92□□□□□ -1.14
SMCHD1-209ENST00000583441 FAM46AQ96IP4 442 aaKnown RBP7.92□□□□□ -1.14
SMCHD1-209ENST00000583441 KCNF1Q9H3M0 494 aa7.92□□□□□ -1.14
SMCHD1-209ENST00000583441 CCDC39Q9UFE4 941 aa7.92□□□□□ -1.14
SMCHD1-209ENST00000583441 RARAP10276 462 aa7.91□□□□□ -1.14
SMCHD1-209ENST00000583441 TARSP26639 723 aaKnown RBP7.91□□□□□ -1.14
SMCHD1-209ENST00000583441 IRF5Q13568 498 aa7.91□□□□□ -1.14
SMCHD1-209ENST00000583441 PKN1Q16512 942 aa7.91□□□□□ -1.14
SMCHD1-209ENST00000583441 IER5Q5VY09 327 aa7.91□□□□□ -1.14
SMCHD1-209ENST00000583441 LZTS3O60299 673 aaPredicted RBP7.9□□□□□ -1.14
SMCHD1-209ENST00000583441 GIMAP7Q8NHV1 300 aa7.9□□□□□ -1.14
SMCHD1-209ENST00000583441 PPP1R12BO60237 982 aaPredicted RBP7.89□□□□□ -1.15
SMCHD1-209ENST00000583441 NRLP54845 237 aa7.89□□□□□ -1.15
SMCHD1-209ENST00000583441 BEND4Q6ZU67 534 aa7.89□□□□□ -1.15
SMCHD1-209ENST00000583441 FAM20CQ8IXL6 584 aa7.89□□□□□ -1.15
SMCHD1-209ENST00000583441 MUC3BQ9H195 1237 aa7.89□□□□□ -1.15
SMCHD1-209ENST00000583441 ATG3Q9NT62 314 aa7.89□□□□□ -1.15
SMCHD1-209ENST00000583441 LEMD3Q9Y2U8 911 aa7.89□□□□□ -1.15
SMCHD1-209ENST00000583441 WISP1O95388 367 aa7.88□□□□□ -1.15
SMCHD1-209ENST00000583441 ZNF865P0CJ78 1059 aaPredicted RBP7.88□□□□□ -1.15
SMCHD1-209ENST00000583441 VSIG10LQ86VR7 867 aa7.88□□□□□ -1.15
SMCHD1-209ENST00000583441 IFT43Q96FT9 208 aa7.88□□□□□ -1.15
SMCHD1-209ENST00000583441 NGLY1Q96IV0 654 aa7.88□□□□□ -1.15
SMCHD1-209ENST00000583441 TGFBR3LH3BV60 316 aa7.87□□□□□ -1.15
SMCHD1-209ENST00000583441 SART1O43290 800 aaKnown RBP7.87□□□□□ -1.15
SMCHD1-209ENST00000583441 SASH3O75995 380 aa7.87□□□□□ -1.15
SMCHD1-209ENST00000583441 GHRHP01286 108 aa7.87□□□□□ -1.15
SMCHD1-209ENST00000583441 BMP3P12645 472 aa7.87□□□□□ -1.15
SMCHD1-209ENST00000583441 SKIP12755 728 aa7.87□□□□□ -1.15
SMCHD1-209ENST00000583441 RBSNQ9H1K0 784 aa7.87□□□□□ -1.15
SMCHD1-209ENST00000583441 J3QW42 95 aa7.86□□□□□ -1.15
SMCHD1-209ENST00000583441 PIK3CDO00329 1044 aa7.86□□□□□ -1.15
SMCHD1-209ENST00000583441 CD68P34810 354 aaPredicted RBP7.86□□□□□ -1.15
SMCHD1-209ENST00000583441 MFSD14AQ96MC6 490 aa7.86□□□□□ -1.15
SMCHD1-209ENST00000583441 PPME1Q9Y570 386 aa7.86□□□□□ -1.15
SMCHD1-209ENST00000583441 LOC102724428A0A0B4J2F2 783 aa7.85□□□□□ -1.15
SMCHD1-209ENST00000583441 FARP2O94887 1054 aaPredicted RBP7.85□□□□□ -1.15
SMCHD1-209ENST00000583441 PRNPP04156 253 aa7.85□□□□□ -1.15
SMCHD1-209ENST00000583441 SIK1P57059 783 aa7.85□□□□□ -1.15
SMCHD1-209ENST00000583441 MSMPQ1L6U9 139 aa7.85□□□□□ -1.15
SMCHD1-209ENST00000583441 CACTIN-AS1Q8N1I8 211 aa7.85□□□□□ -1.15
SMCHD1-209ENST00000583441 GALNT11Q8NCW6 608 aa7.85□□□□□ -1.15
SMCHD1-209ENST00000583441 TPCN2Q8NHX9 752 aa7.85□□□□□ -1.15
SMCHD1-209ENST00000583441 FOSL1P15407 271 aa7.84□□□□□ -1.15
SMCHD1-209ENST00000583441 GRNP28799 593 aaKnown RBP7.84□□□□□ -1.15
SMCHD1-209ENST00000583441 SOX11P35716 441 aa7.84□□□□□ -1.15
SMCHD1-209ENST00000583441 NCOA4Q13772 614 aa7.84□□□□□ -1.15
SMCHD1-209ENST00000583441 TMEM132AQ24JP5 1023 aa7.84□□□□□ -1.15
SMCHD1-209ENST00000583441 KRTAP19-4Q3LI73 84 aa7.84□□□□□ -1.15
SMCHD1-209ENST00000583441 AGBL5Q8NDL9 886 aa7.84□□□□□ -1.15
SMCHD1-209ENST00000583441 DMGDHQ9UI17 866 aaKnown RBP7.84□□□□□ -1.15
SMCHD1-209ENST00000583441 PRRG2O14669 202 aa7.83□□□□□ -1.16
SMCHD1-209ENST00000583441 COL19A1Q14993 1142 aa7.83□□□□□ -1.16
SMCHD1-209ENST00000583441 WASHC4Q2M389 1173 aa7.83□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms