RNA–Protein interactions for RNA: ENST00000581226.1

SMCHD1-204, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 459 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-204ENST00000581226 GDF2Q9UK05 429 aaPredicted RBP8.27□□□□□ -1.09
SMCHD1-204ENST00000581226 RARAP10276 462 aa8.26□□□□□ -1.09
SMCHD1-204ENST00000581226 NLRP13Q86W25 1043 aa8.26□□□□□ -1.09
SMCHD1-204ENST00000581226 GOLGA6L1Q8N7Z2 621 aa8.26□□□□□ -1.09
SMCHD1-204ENST00000581226 GGNBP2Q9H3C7 697 aa8.26□□□□□ -1.09
SMCHD1-204ENST00000581226 IGFLR1Q9H665 355 aa8.26□□□□□ -1.09
SMCHD1-204ENST00000581226 ZFATQ9P243 1243 aa8.26□□□□□ -1.09
SMCHD1-204ENST00000581226 A6NHS1 94 aa8.25□□□□□ -1.09
SMCHD1-204ENST00000581226 SIN3BO75182 1162 aa8.25□□□□□ -1.09
SMCHD1-204ENST00000581226 LYPD4Q6UWN0 246 aa8.25□□□□□ -1.09
SMCHD1-204ENST00000581226 ZNF438Q7Z4V0 828 aa8.25□□□□□ -1.09
SMCHD1-204ENST00000581226 WHAMMQ8TF30 809 aa8.25□□□□□ -1.09
SMCHD1-204ENST00000581226 CELA2BP08218 269 aaPredicted RBP8.24□□□□□ -1.09
SMCHD1-204ENST00000581226 BCRP11274 1271 aa8.24□□□□□ -1.09
SMCHD1-204ENST00000581226 EHHADHQ08426 723 aa8.24□□□□□ -1.09
SMCHD1-204ENST00000581226 TBC1D8BQ0IIM8 1120 aa8.24□□□□□ -1.09
SMCHD1-204ENST00000581226 PDE12Q6L8Q7 609 aaKnown RBP8.24□□□□□ -1.09
SMCHD1-204ENST00000581226 SND1Q7KZF4 910 aaKnown RBP eCLIP8.24□□□□□ -1.09
SMCHD1-204ENST00000581226 GJD3Q8N144 294 aa8.24□□□□□ -1.09
SMCHD1-204ENST00000581226 GALNT6Q8NCL4 622 aa8.24□□□□□ -1.09
SMCHD1-204ENST00000581226 TMC1Q8TDI8 760 aa8.24□□□□□ -1.09
SMCHD1-204ENST00000581226 MAP3K6O95382 1288 aa8.23□□□□□ -1.09
SMCHD1-204ENST00000581226 MAP3K10Q02779 954 aa8.23□□□□□ -1.09
SMCHD1-204ENST00000581226 TTC39BQ5VTQ0 682 aaPredicted RBP8.23□□□□□ -1.09
SMCHD1-204ENST00000581226 ZNF385CQ66K41 422 aaPredicted RBP8.23□□□□□ -1.09
SMCHD1-204ENST00000581226 SLCO4C1Q6ZQN7 724 aa8.23□□□□□ -1.09
SMCHD1-204ENST00000581226 C1orf229Q6ZS94 237 aaPredicted RBP8.23□□□□□ -1.09
SMCHD1-204ENST00000581226 DHX32Q7L7V1 743 aaKnown RBP8.23□□□□□ -1.09
SMCHD1-204ENST00000581226 FCHSD1Q86WN1 690 aa8.23□□□□□ -1.09
SMCHD1-204ENST00000581226 SVOPQ8N4V2 548 aa8.23□□□□□ -1.09
SMCHD1-204ENST00000581226 EDARADDQ8WWZ3 215 aa8.23□□□□□ -1.09
SMCHD1-204ENST00000581226 UBE2OQ9C0C9 1292 aaKnown RBP8.23□□□□□ -1.09
SMCHD1-204ENST00000581226 ELP3Q9H9T3 547 aa8.23□□□□□ -1.09
SMCHD1-204ENST00000581226 DCTN4Q9UJW0 460 aa8.23□□□□□ -1.09
SMCHD1-204ENST00000581226 MMP20O60882 483 aa8.22□□□□□ -1.09
SMCHD1-204ENST00000581226 MAPK1P28482 360 aa8.22□□□□□ -1.09
SMCHD1-204ENST00000581226 SUZ12Q15022 739 aaKnown RBP8.22□□□□□ -1.09
SMCHD1-204ENST00000581226 XKR5Q6UX68 686 aa8.22□□□□□ -1.09
SMCHD1-204ENST00000581226 TNFRSF25Q93038 417 aa8.22□□□□□ -1.09
SMCHD1-204ENST00000581226 CITED4Q96RK1 184 aa8.22□□□□□ -1.09
SMCHD1-204ENST00000581226 TMEM63CQ9P1W3 806 aa8.22□□□□□ -1.09
SMCHD1-204ENST00000581226 OIP5O43482 229 aa8.21□□□□□ -1.1
SMCHD1-204ENST00000581226 PSAPP07602 524 aa8.21□□□□□ -1.1
SMCHD1-204ENST00000581226 EPXP11678 715 aa8.21□□□□□ -1.1
SMCHD1-204ENST00000581226 ALAS2P22557 587 aa8.21□□□□□ -1.1
SMCHD1-204ENST00000581226 PDE3BQ13370 1112 aa8.21□□□□□ -1.1
SMCHD1-204ENST00000581226 LRRC4BQ9NT99 713 aa8.21□□□□□ -1.1
SMCHD1-204ENST00000581226 DNAJB12Q9NXW2 375 aaKnown RBP8.21□□□□□ -1.1
SMCHD1-204ENST00000581226 ABI2Q9NYB9 513 aaPredicted RBP8.21□□□□□ -1.1
SMCHD1-204ENST00000581226 TLR7Q9NYK1 1049 aaKnown RBP8.21□□□□□ -1.1
SMCHD1-204ENST00000581226 ELOA3CA0A087WX78 387 aaPredicted RBP8.2□□□□□ -1.1
SMCHD1-204ENST00000581226 ELOA3DA6NLF2 546 aaPredicted RBP8.2□□□□□ -1.1
SMCHD1-204ENST00000581226 ADARB2-AS1A8MUL3 147 aa8.2□□□□□ -1.1
SMCHD1-204ENST00000581226 MARSP56192 900 aaKnown RBP8.2□□□□□ -1.1
SMCHD1-204ENST00000581226 TRIM26Q12899 539 aaPredicted RBP8.2□□□□□ -1.1
SMCHD1-204ENST00000581226 ELOA3BQ3SY89 546 aa8.2□□□□□ -1.1
SMCHD1-204ENST00000581226 ELOA3Q8NG57 546 aa8.2□□□□□ -1.1
SMCHD1-204ENST00000581226 RBCK1Q9BYM8 510 aa8.2□□□□□ -1.1
SMCHD1-204ENST00000581226 ENAMQ9NRM1 1142 aa8.2□□□□□ -1.1
SMCHD1-204ENST00000581226 ADH7P40394 386 aa8.19□□□□□ -1.1
SMCHD1-204ENST00000581226 MLLT1Q03111 559 aaPredicted RBP8.19□□□□□ -1.1
SMCHD1-204ENST00000581226 PLAURQ03405 335 aa8.19□□□□□ -1.1
SMCHD1-204ENST00000581226 PCSK7Q16549 785 aa8.19□□□□□ -1.1
SMCHD1-204ENST00000581226 OR13H1Q8NG92 308 aa8.19□□□□□ -1.1
SMCHD1-204ENST00000581226 FAM129BQ96TA1 746 aa8.19□□□□□ -1.1
SMCHD1-204ENST00000581226 ZBTB42B2RXF5 422 aa8.18□□□□□ -1.1
SMCHD1-204ENST00000581226 SHISA8B8ZZ34 492 aa8.18□□□□□ -1.1
SMCHD1-204ENST00000581226 TNFRSF21O75509 655 aa8.18□□□□□ -1.1
SMCHD1-204ENST00000581226 AMPD1P23109 780 aa8.18□□□□□ -1.1
SMCHD1-204ENST00000581226 TMC7Q7Z402 723 aa8.18□□□□□ -1.1
SMCHD1-204ENST00000581226 NEDD1Q8NHV4 660 aa8.18□□□□□ -1.1
SMCHD1-204ENST00000581226 TRPM4Q8TD43 1214 aa8.18□□□□□ -1.1
SMCHD1-204ENST00000581226 CNTN3Q9P232 1028 aa8.18□□□□□ -1.1
SMCHD1-204ENST00000581226 SLC6A14Q9UN76 642 aa8.18□□□□□ -1.1
SMCHD1-204ENST00000581226 PHF20L1A8MW92 1017 aa8.17□□□□□ -1.1
SMCHD1-204ENST00000581226 SOX18P35713 384 aa8.17□□□□□ -1.1
SMCHD1-204ENST00000581226 NRLP54845 237 aa8.17□□□□□ -1.1
SMCHD1-204ENST00000581226 HFE2Q6ZVN8 426 aa8.17□□□□□ -1.1
SMCHD1-204ENST00000581226 ZSCAN29Q8IWY8 852 aaPredicted RBP8.17□□□□□ -1.1
SMCHD1-204ENST00000581226 C1orf127Q8N9H9 656 aa8.17□□□□□ -1.1
SMCHD1-204ENST00000581226 BTBD6Q96KE9 485 aa8.17□□□□□ -1.1
SMCHD1-204ENST00000581226 DMRTB1Q96MA1 342 aa8.17□□□□□ -1.1
SMCHD1-204ENST00000581226 MDFIQ99750 246 aa8.17□□□□□ -1.1
SMCHD1-204ENST00000581226 GPR182O15218 404 aa8.16□□□□□ -1.1
SMCHD1-204ENST00000581226 PHACTR2O75167 634 aa8.16□□□□□ -1.1
SMCHD1-204ENST00000581226 ARHGEF15O94989 841 aa8.16□□□□□ -1.1
SMCHD1-204ENST00000581226 CYP2E1P05181 493 aaPredicted RBP8.16□□□□□ -1.1
SMCHD1-204ENST00000581226 NEFLP07196 543 aa8.16□□□□□ -1.1
SMCHD1-204ENST00000581226 CES1P23141 567 aa8.16□□□□□ -1.1
SMCHD1-204ENST00000581226 GPLD1P80108 840 aa8.16□□□□□ -1.1
SMCHD1-204ENST00000581226 CHSY3Q70JA7 882 aa8.16□□□□□ -1.1
SMCHD1-204ENST00000581226 FAM35AQ86V20 835 aa8.16□□□□□ -1.1
SMCHD1-204ENST00000581226 SNX29Q8TEQ0 813 aa8.16□□□□□ -1.1
SMCHD1-204ENST00000581226 PMEPA1Q969W9 287 aa8.16□□□□□ -1.1
SMCHD1-204ENST00000581226 NSUN5Q96P11 429 aaKnown RBP8.16□□□□□ -1.1
SMCHD1-204ENST00000581226 NIF3L1Q9GZT8 377 aa8.16□□□□□ -1.1
SMCHD1-204ENST00000581226 FOXD3Q9UJU5 478 aaPredicted RBP8.16□□□□□ -1.1
SMCHD1-204ENST00000581226 LOC102724428A0A0B4J2F2 783 aa8.15□□□□□ -1.1
SMCHD1-204ENST00000581226 J3QW42 95 aa8.15□□□□□ -1.1
SMCHD1-204ENST00000581226 CPB1P15086 417 aa8.15□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms