RNA–Protein interactions for RNA: ENST00000577725.1

CRLF3-202, Transcript of cytokine receptor like factor 3, humanhuman

TSL 5

Gene CRLF3, Length 613 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CRLF3-202ENST00000577725 ZPR1O75312 459 aa12.71□□□□□ -0.37
CRLF3-202ENST00000577725 MYCNP04198 464 aaPredicted RBP12.71□□□□□ -0.37
CRLF3-202ENST00000577725 NBPF10Q6P3W6 841 aaKnown RBP12.71□□□□□ -0.37
CRLF3-202ENST00000577725 XAGE3Q8WTP9 111 aa12.71□□□□□ -0.37
CRLF3-202ENST00000577725 DICER1Q9UPY3 1922 aaKnown RBP12.7□□□□□ -0.38
CRLF3-202ENST00000577725 CRKLP46109 303 aaKnown RBP12.7□□□□□ -0.38
CRLF3-202ENST00000577725 CST9Q5W186 159 aa12.7□□□□□ -0.38
CRLF3-202ENST00000577725 ZNF622Q969S3 477 aaKnown RBP eCLIP12.7□□□□□ -0.381e-6■■□□□ 11.5
CRLF3-202ENST00000577725 CHMP4AQ9BY43 222 aa12.7□□□□□ -0.38
CRLF3-202ENST00000577725 C1orf115Q9H7X2 142 aa12.7□□□□□ -0.38
CRLF3-202ENST00000577725 HYPKQ9NX55 129 aa12.7□□□□□ -0.38
CRLF3-202ENST00000577725 DDX19BQ9UMR2 479 aa12.7□□□□□ -0.38
CRLF3-202ENST00000577725 COL5A3P25940 1745 aaPredicted RBP12.7□□□□□ -0.38
CRLF3-202ENST00000577725 SERPINB2P05120 415 aa12.69□□□□□ -0.38
CRLF3-202ENST00000577725 NFIXQ14938 502 aa12.69□□□□□ -0.38
CRLF3-202ENST00000577725 USPL1Q5W0Q7 1092 aa12.69□□□□□ -0.38
CRLF3-202ENST00000577725 INTS3Q68E01 1043 aaKnown RBP12.69□□□□□ -0.38
CRLF3-202ENST00000577725 CIAPIN1Q6FI81 312 aa12.69□□□□□ -0.38
CRLF3-202ENST00000577725 LRP10Q7Z4F1 713 aa12.69□□□□□ -0.38
CRLF3-202ENST00000577725 PDZRN3Q9UPQ7 1066 aa12.69□□□□□ -0.38
CRLF3-202ENST00000577725 PCDHB15Q9Y5E8 787 aa12.69□□□□□ -0.38
CRLF3-202ENST00000577725 CASP8AP2Q9UKL3 1982 aa12.69□□□□□ -0.38
CRLF3-202ENST00000577725 ZNF541Q9H0D2 1346 aa12.68□□□□□ -0.38
CRLF3-202ENST00000577725 PI4KAP2A4QPH2 592 aa12.68□□□□□ -0.38
CRLF3-202ENST00000577725 FMR1Q06787 632 aaKnown RBP eCLIP12.68□□□□□ -0.38
CRLF3-202ENST00000577725 SOGA3Q5TF21 947 aa12.68□□□□□ -0.38
CRLF3-202ENST00000577725 COPS6Q7L5N1 327 aa12.68□□□□□ -0.38
CRLF3-202ENST00000577725 VSIG10Q8N0Z9 540 aa12.68□□□□□ -0.38
CRLF3-202ENST00000577725 PI4KAP1Q8N8J0 262 aa12.68□□□□□ -0.38
CRLF3-202ENST00000577725 HHIPL1Q96JK4 782 aa12.68□□□□□ -0.38
CRLF3-202ENST00000577725 ZNF330Q9Y3S2 320 aaPredicted RBP12.68□□□□□ -0.38
CRLF3-202ENST00000577725 ZBTB7BO15156 539 aaPredicted RBP12.67□□□□□ -0.38
CRLF3-202ENST00000577725 CYP19A1P11511 503 aaPredicted RBP12.67□□□□□ -0.38
CRLF3-202ENST00000577725 TTLL7Q6ZT98 887 aa12.67□□□□□ -0.38
CRLF3-202ENST00000577725 SAPCD2Q86UD0 394 aa12.67□□□□□ -0.38
CRLF3-202ENST00000577725 DNAAF4Q8WXU2 420 aa12.67□□□□□ -0.38
CRLF3-202ENST00000577725 MAP3K2Q9Y2U5 619 aa12.67□□□□□ -0.38
CRLF3-202ENST00000577725 CARMIL3Q8ND23 1372 aa12.67□□□□□ -0.38
CRLF3-202ENST00000577725 ERBB4Q15303 1308 aa12.66□□□□□ -0.38
CRLF3-202ENST00000577725 FER1L6Q2WGJ9 1857 aa12.66□□□□□ -0.38
CRLF3-202ENST00000577725 NRXN2Q9P2S2 1712 aa12.66□□□□□ -0.38
CRLF3-202ENST00000577725 STARD3NLO95772 234 aa12.66□□□□□ -0.38
CRLF3-202ENST00000577725 CCT4P50991 539 aaKnown RBP12.66□□□□□ -0.38
CRLF3-202ENST00000577725 MAPK8IP2Q13387 824 aaPredicted RBP12.66□□□□□ -0.38
CRLF3-202ENST00000577725 KSR2Q6VAB6 950 aa12.66□□□□□ -0.38
CRLF3-202ENST00000577725 SLC17A8Q8NDX2 589 aa12.66□□□□□ -0.38
CRLF3-202ENST00000577725 MEIS3Q99687 375 aa12.66□□□□□ -0.38
CRLF3-202ENST00000577725 TEX13AQ9BXU3 409 aaPredicted RBP12.66□□□□□ -0.38
CRLF3-202ENST00000577725 ZBTB40Q9NUA8 1239 aa12.66□□□□□ -0.38
CRLF3-202ENST00000577725 ZBTB1Q9Y2K1 713 aa12.66□□□□□ -0.38
CRLF3-202ENST00000577725 ARFGEF2Q9Y6D5 1785 aa12.66□□□□□ -0.38
CRLF3-202ENST00000577725 DDX58O95786 925 aaKnown RBP12.65□□□□□ -0.38
CRLF3-202ENST00000577725 IGHDP01880 384 aa12.65□□□□□ -0.38
CRLF3-202ENST00000577725 RIC3Q7Z5B4 369 aa12.65□□□□□ -0.38
CRLF3-202ENST00000577725 MYH14Q7Z406 1995 aaKnown RBP12.65□□□□□ -0.38
CRLF3-202ENST00000577725 TRAF5O00463 557 aa12.64□□□□□ -0.39
CRLF3-202ENST00000577725 PDE6BP35913 854 aa12.64□□□□□ -0.39
CRLF3-202ENST00000577725 NOGQ13253 232 aa12.64□□□□□ -0.39
CRLF3-202ENST00000577725 BEND3Q5T5X7 828 aa12.64□□□□□ -0.39
CRLF3-202ENST00000577725 CTU1Q7Z7A3 348 aaKnown RBP12.64□□□□□ -0.39
CRLF3-202ENST00000577725 MYD88Q99836 296 aa12.64□□□□□ -0.39
CRLF3-202ENST00000577725 SRCIN1Q9C0H9 1055 aa12.64□□□□□ -0.39
CRLF3-202ENST00000577725 ZBTB3Q9H5J0 574 aa12.64□□□□□ -0.39
CRLF3-202ENST00000577725 SAGE1Q9NXZ1 904 aa12.64□□□□□ -0.39
CRLF3-202ENST00000577725 HPS5Q9UPZ3 1129 aa12.64□□□□□ -0.39
CRLF3-202ENST00000577725 AFDNP55196 1824 aaKnown RBP12.63□□□□□ -0.39
CRLF3-202ENST00000577725 INTS5Q6P9B9 1019 aaKnown RBP12.63□□□□□ -0.39
CRLF3-202ENST00000577725 BICDL1Q6ZP65 573 aa12.63□□□□□ -0.39
CRLF3-202ENST00000577725 SKAP1Q86WV1 359 aa12.63□□□□□ -0.39
CRLF3-202ENST00000577725 GPC2Q8N158 579 aa12.63□□□□□ -0.39
CRLF3-202ENST00000577725 CNKSR1Q969H4 720 aa12.63□□□□□ -0.39
CRLF3-202ENST00000577725 BRIP1Q9BX63 1249 aa12.63□□□□□ -0.39
CRLF3-202ENST00000577725 NARFQ9UHQ1 456 aa12.63□□□□□ -0.39
CRLF3-202ENST00000577725 CWF19L2Q2TBE0 894 aaKnown RBP12.62□□□□□ -0.39
CRLF3-202ENST00000577725 PRPF40BQ6NWY9 871 aaKnown RBP12.62□□□□□ -0.39
CRLF3-202ENST00000577725 ANKRD13DQ6ZTN6 518 aa12.62□□□□□ -0.39
CRLF3-202ENST00000577725 ATP5J2-PTCD1G3V325 749 aa12.61□□□□□ -0.39
CRLF3-202ENST00000577725 IGKV5-2P06315 115 aa12.61□□□□□ -0.39
CRLF3-202ENST00000577725 PRKCSHP14314 528 aaPredicted RBP12.61□□□□□ -0.39
CRLF3-202ENST00000577725 LMOD1P29536 600 aaPredicted RBP12.61□□□□□ -0.39
CRLF3-202ENST00000577725 AAMPQ13685 434 aa12.61□□□□□ -0.39
CRLF3-202ENST00000577725 PLBD2Q8NHP8 589 aa12.61□□□□□ -0.39
CRLF3-202ENST00000577725 METTL22Q9BUU2 404 aaPredicted RBP12.61□□□□□ -0.39
CRLF3-202ENST00000577725 FZD9O00144 591 aa12.6□□□□□ -0.39
CRLF3-202ENST00000577725 CELF2O95319 508 aaKnown RBP12.6□□□□□ -0.39
CRLF3-202ENST00000577725 PKN2Q16513 984 aaKnown RBP12.6□□□□□ -0.39
CRLF3-202ENST00000577725 KIF6Q6ZMV9 814 aa12.6□□□□□ -0.39
CRLF3-202ENST00000577725 JARID2Q92833 1246 aaPredicted RBP12.6□□□□□ -0.39
CRLF3-202ENST00000577725 USP44Q9H0E7 712 aa12.6□□□□□ -0.39
CRLF3-202ENST00000577725 CHMP4BQ9H444 224 aaKnown RBP12.6□□□□□ -0.39
CRLF3-202ENST00000577725 ALDH1L1O75891 902 aa12.59□□□□□ -0.39
CRLF3-202ENST00000577725 FKBP4Q02790 459 aaKnown RBP eCLIP12.59□□□□□ -0.39
CRLF3-202ENST00000577725 CCDC93Q567U6 631 aa12.59□□□□□ -0.39
CRLF3-202ENST00000577725 STYK1Q6J9G0 422 aa12.59□□□□□ -0.39
CRLF3-202ENST00000577725 USP50Q70EL3 339 aaPredicted RBP12.59□□□□□ -0.39
CRLF3-202ENST00000577725 CENPQQ7L2Z9 268 aaPredicted RBP12.59□□□□□ -0.39
CRLF3-202ENST00000577725 SIRT2Q8IXJ6 389 aa12.59□□□□□ -0.39
CRLF3-202ENST00000577725 LINS1Q8NG48 757 aa12.59□□□□□ -0.39
CRLF3-202ENST00000577725 ZIC5Q96T25 663 aa12.59□□□□□ -0.39
CRLF3-202ENST00000577725 RWDD1Q9H446 243 aaPredicted RBP12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms