RNA–Protein interactions for RNA: ENST00000574799.5

CCDC40-212, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best)

Gene CCDC40, Length 3,795 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-212ENST00000574799 CCAR2Q8N163 923 aaKnown RBP11.3□□□□□ -0.6
CCDC40-212ENST00000574799 ITGB4P16144 1822 aa11.3□□□□□ -0.6
CCDC40-212ENST00000574799 ZNF165P49910 485 aa11.29□□□□□ -0.6
CCDC40-212ENST00000574799 PDE1AP54750 535 aa11.29□□□□□ -0.6
CCDC40-212ENST00000574799 ZC3H6P61129 1189 aaKnown RBP11.29□□□□□ -0.6
CCDC40-212ENST00000574799 TYRO3Q06418 890 aa11.29□□□□□ -0.6
CCDC40-212ENST00000574799 SYT1P21579 422 aa11.29□□□□□ -0.6
CCDC40-212ENST00000574799 OS9Q13438 667 aaPredicted RBP11.29□□□□□ -0.6
CCDC40-212ENST00000574799 GOLGA6L1Q8N7Z2 621 aa11.29□□□□□ -0.6
CCDC40-212ENST00000574799 DDX54Q8TDD1 881 aaKnown RBP11.29□□□□□ -0.6
CCDC40-212ENST00000574799 ST7Q9NRC1 585 aa11.29□□□□□ -0.6
CCDC40-212ENST00000574799 SOS1Q07889 1333 aaPredicted RBP11.29□□□□□ -0.6
CCDC40-212ENST00000574799 ZNF335Q9H4Z2 1342 aaPredicted RBP11.29□□□□□ -0.6
CCDC40-212ENST00000574799 COL5A2P05997 1499 aaPredicted RBP11.29□□□□□ -0.6
CCDC40-212ENST00000574799 CTIFO43310 598 aaKnown RBP11.29□□□□□ -0.6
CCDC40-212ENST00000574799 F13A1P00488 732 aa11.29□□□□□ -0.6
CCDC40-212ENST00000574799 TPM4P67936 248 aa11.29□□□□□ -0.6
CCDC40-212ENST00000574799 C10orf67Q8IYJ2 551 aa11.29□□□□□ -0.6
CCDC40-212ENST00000574799 CHPF2Q9P2E5 772 aa11.29□□□□□ -0.6
CCDC40-212ENST00000574799 EP400Q96L91 3159 aa11.29□□□□□ -0.6
CCDC40-212ENST00000574799 TMCO3Q6UWJ1 677 aa11.28□□□□□ -0.6
CCDC40-212ENST00000574799 ANXA1P04083 346 aa11.28□□□□□ -0.6
CCDC40-212ENST00000574799 SKILP12757 684 aa11.28□□□□□ -0.6
CCDC40-212ENST00000574799 LARP1BQ659C4 914 aaKnown RBP11.28□□□□□ -0.6
CCDC40-212ENST00000574799 CWC15Q9P013 229 aaKnown RBP11.28□□□□□ -0.6
CCDC40-212ENST00000574799 SLU7O95391 586 aaKnown RBP11.28□□□□□ -0.6
CCDC40-212ENST00000574799 UBXN4Q92575 508 aa11.28□□□□□ -0.6
CCDC40-212ENST00000574799 TFIP11Q9UBB9 837 aaKnown RBP11.28□□□□□ -0.6
CCDC40-212ENST00000574799 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP11.28□□□□□ -0.6
CCDC40-212ENST00000574799 PLCH1Q4KWH8 1693 aa11.28□□□□□ -0.6
CCDC40-212ENST00000574799 COL22A1Q8NFW1 1626 aaPredicted RBP11.28□□□□□ -0.6
CCDC40-212ENST00000574799 SOS2Q07890 1332 aaPredicted RBP11.27□□□□□ -0.6
CCDC40-212ENST00000574799 GIGYF1O75420 1035 aaPredicted RBP11.27□□□□□ -0.6
CCDC40-212ENST00000574799 BEND3Q5T5X7 828 aa11.27□□□□□ -0.6
CCDC40-212ENST00000574799 ZSCAN25Q6NSZ9 544 aa11.27□□□□□ -0.6
CCDC40-212ENST00000574799 MORC2Q9Y6X9 1032 aaPredicted RBP11.27□□□□□ -0.6
CCDC40-212ENST00000574799 APPP05067 770 aa11.27□□□□□ -0.61
CCDC40-212ENST00000574799 ZNF530Q6P9A1 599 aaPredicted RBP11.27□□□□□ -0.61
CCDC40-212ENST00000574799 LRRCC1Q9C099 1032 aa11.27□□□□□ -0.61
CCDC40-212ENST00000574799 CYP27B1O15528 508 aa11.27□□□□□ -0.61
CCDC40-212ENST00000574799 GJB2P29033 226 aa11.27□□□□□ -0.61
CCDC40-212ENST00000574799 HNRNPH2P55795 449 aaKnown RBP11.27□□□□□ -0.61
CCDC40-212ENST00000574799 NEK11Q8NG66 645 aa11.27□□□□□ -0.61
CCDC40-212ENST00000574799 DNAJC25Q9H1X3 360 aa11.27□□□□□ -0.61
CCDC40-212ENST00000574799 IL1RAPL2Q9NP60 686 aa11.27□□□□□ -0.61
CCDC40-212ENST00000574799 DACT1Q9NYF0 836 aa11.27□□□□□ -0.61
CCDC40-212ENST00000574799 RSPH14Q9UHP6 348 aa11.27□□□□□ -0.61
CCDC40-212ENST00000574799 NBPF7P0C2Y1 421 aaPredicted RBP11.26□□□□□ -0.61
CCDC40-212ENST00000574799 CEBPZQ03701 1054 aaKnown RBP11.26□□□□□ -0.61
CCDC40-212ENST00000574799 CUL4AQ13619 759 aa11.26□□□□□ -0.61
CCDC40-212ENST00000574799 KMT5BQ4FZB7 885 aa11.26□□□□□ -0.61
CCDC40-212ENST00000574799 CCDC30Q5VVM6 783 aa11.26□□□□□ -0.61
CCDC40-212ENST00000574799 SPATA32Q96LK8 384 aa11.26□□□□□ -0.61
CCDC40-212ENST00000574799 LIMCH1Q9UPQ0 1083 aa11.26□□□□□ -0.61
CCDC40-212ENST00000574799 CASTP20810 708 aaKnown RBP11.26□□□□□ -0.61
CCDC40-212ENST00000574799 FBXO38Q6PIJ6 1188 aa11.26□□□□□ -0.61
CCDC40-212ENST00000574799 ERO1AQ96HE7 468 aa11.26□□□□□ -0.61
CCDC40-212ENST00000574799 KAZALD1Q96I82 304 aa11.26□□□□□ -0.61
CCDC40-212ENST00000574799 CCDC171Q6TFL3 1326 aa11.26□□□□□ -0.61
CCDC40-212ENST00000574799 CCT4P50991 539 aaKnown RBP11.26□□□□□ -0.61
CCDC40-212ENST00000574799 ANAPC15P60006 121 aa11.26□□□□□ -0.61
CCDC40-212ENST00000574799 CHRNA2Q15822 529 aa11.26□□□□□ -0.61
CCDC40-212ENST00000574799 SYTL4Q96C24 671 aaPredicted RBP11.26□□□□□ -0.61
CCDC40-212ENST00000574799 RASSF4Q9H2L5 321 aa11.26□□□□□ -0.61
CCDC40-212ENST00000574799 HOXB7P09629 217 aa11.25□□□□□ -0.61
CCDC40-212ENST00000574799 PHKG2P15735 406 aa11.25□□□□□ -0.61
CCDC40-212ENST00000574799 RNF20Q5VTR2 975 aa11.25□□□□□ -0.61
CCDC40-212ENST00000574799 FAM173BQ6P4H8 233 aa11.25□□□□□ -0.61
CCDC40-212ENST00000574799 CBX8Q9HC52 389 aa11.25□□□□□ -0.61
CCDC40-212ENST00000574799 TAOK2Q9UL54 1235 aa11.25□□□□□ -0.61
CCDC40-212ENST00000574799 PLEKHG2Q9H7P9 1386 aa11.25□□□□□ -0.61
CCDC40-212ENST00000574799 BTBD11A6QL63 1104 aa11.25□□□□□ -0.61
CCDC40-212ENST00000574799 POLA2Q14181 598 aa11.25□□□□□ -0.61
CCDC40-212ENST00000574799 OSBPL3Q9H4L5 887 aa11.25□□□□□ -0.61
CCDC40-212ENST00000574799 ROBO1Q9Y6N7 1651 aa11.25□□□□□ -0.61
CCDC40-212ENST00000574799 NPHP3Q7Z494 1330 aa11.25□□□□□ -0.61
CCDC40-212ENST00000574799 ZNF75DP51815 510 aa11.25□□□□□ -0.61
CCDC40-212ENST00000574799 GTF2A1P52655 376 aaPredicted RBP11.25□□□□□ -0.61
CCDC40-212ENST00000574799 ARHGAP29Q52LW3 1261 aa11.25□□□□□ -0.61
CCDC40-212ENST00000574799 HDGFL1Q5TGJ6 251 aa11.25□□□□□ -0.61
CCDC40-212ENST00000574799 AEBP2Q6ZN18 517 aaPredicted RBP11.25□□□□□ -0.61
CCDC40-212ENST00000574799 KRBA2Q6ZNG9 492 aa11.25□□□□□ -0.61
CCDC40-212ENST00000574799 FAM177A1Q8N128 213 aaPredicted RBP11.25□□□□□ -0.61
CCDC40-212ENST00000574799 FMNL2Q96PY5 1086 aa11.25□□□□□ -0.61
CCDC40-212ENST00000574799 IL25Q9H293 177 aa11.25□□□□□ -0.61
CCDC40-212ENST00000574799 H3BQV1 296 aa11.24□□□□□ -0.61
CCDC40-212ENST00000574799 CPA1P15085 419 aa11.24□□□□□ -0.61
CCDC40-212ENST00000574799 FOSBP53539 338 aa11.24□□□□□ -0.61
CCDC40-212ENST00000574799 SYCP1Q15431 976 aa11.24□□□□□ -0.61
CCDC40-212ENST00000574799 ERCC6LQ2NKX8 1250 aa11.24□□□□□ -0.61
CCDC40-212ENST00000574799 AMOTQ4VCS5 1084 aa11.24□□□□□ -0.61
CCDC40-212ENST00000574799 IFFO2Q5TF58 517 aa11.24□□□□□ -0.61
CCDC40-212ENST00000574799 CCDC191Q8NCU4 936 aa11.24□□□□□ -0.61
CCDC40-212ENST00000574799 CACTINQ8WUQ7 758 aaKnown RBP11.24□□□□□ -0.61
CCDC40-212ENST00000574799 TOMM22Q9NS69 142 aa11.24□□□□□ -0.61
CCDC40-212ENST00000574799 NRAPQ86VF7 1730 aa11.24□□□□□ -0.61
CCDC40-212ENST00000574799 SNW1Q13573 536 aaKnown RBP11.24□□□□□ -0.61
CCDC40-212ENST00000574799 NOM1Q5C9Z4 860 aaKnown RBP11.24□□□□□ -0.61
CCDC40-212ENST00000574799 CWC27Q6UX04 472 aaKnown RBP11.24□□□□□ -0.61
CCDC40-212ENST00000574799 AK7Q96M32 723 aa11.24□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms