RNA–Protein interactions for RNA: ENST00000574428.5

ATPAF1-213, Transcript of ATP synthase mitochondrial F1 complex assembly factor 1, humanhuman

TSL 1 (best) BASIC

Gene ATPAF1, Length 1,760 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATPAF1-213ENST00000574428 SERPINB2P05120 415 aa29.86■■■□□ 2.37
ATPAF1-213ENST00000574428 RFX5P48382 616 aaPredicted RBP29.86■■■□□ 2.37
ATPAF1-213ENST00000574428 SURF6O75683 361 aaKnown RBP29.85■■■□□ 2.37
ATPAF1-213ENST00000574428 HSP90B1P14625 803 aaKnown RBP29.85■■■□□ 2.37
ATPAF1-213ENST00000574428 PDZRN3Q9UPQ7 1066 aa29.85■■■□□ 2.37
ATPAF1-213ENST00000574428 MMP10P09238 476 aa29.84■■■□□ 2.37
ATPAF1-213ENST00000574428 SLC10A5Q5PT55 438 aa29.84■■■□□ 2.37
ATPAF1-213ENST00000574428 PRR5LQ6MZQ0 368 aa29.84■■■□□ 2.37
ATPAF1-213ENST00000574428 GREM2Q9H772 168 aa29.84■■■□□ 2.37
ATPAF1-213ENST00000574428 ANKRD45Q5TZF3 282 aa29.83■■■□□ 2.37
ATPAF1-213ENST00000574428 C3orf67Q6ZVT6 689 aa29.83■■■□□ 2.37
ATPAF1-213ENST00000574428 NUCB1Q02818 461 aa29.82■■■□□ 2.36
ATPAF1-213ENST00000574428 PTPN12Q05209 780 aaKnown RBP29.82■■■□□ 2.36
ATPAF1-213ENST00000574428 CCDC57Q2TAC2 916 aa29.82■■■□□ 2.36
ATPAF1-213ENST00000574428 SIL1Q9H173 461 aa29.82■■■□□ 2.36
ATPAF1-213ENST00000574428 NOP58Q9Y2X3 529 aaKnown RBP29.82■■■□□ 2.36
ATPAF1-213ENST00000574428 TNRC6CQ9HCJ0 1690 aaKnown RBP29.82■■■□□ 2.36
ATPAF1-213ENST00000574428 CASZ1Q86V15 1759 aa29.81■■■□□ 2.36
ATPAF1-213ENST00000574428 IFIT5Q13325 482 aaKnown RBP29.8■■■□□ 2.36
ATPAF1-213ENST00000574428 COPRSQ9NQ92 184 aa29.8■■■□□ 2.36
ATPAF1-213ENST00000574428 ITGA6P23229 1130 aa29.8■■■□□ 2.36
ATPAF1-213ENST00000574428 ZNF594Q96JF6 807 aaPredicted RBP29.8■■■□□ 2.36
ATPAF1-213ENST00000574428 OS9Q13438 667 aaPredicted RBP29.79■■■□□ 2.36
ATPAF1-213ENST00000574428 CCDC152Q4G0S7 254 aa29.79■■■□□ 2.36
ATPAF1-213ENST00000574428 LNPKQ9C0E8 428 aa29.79■■■□□ 2.36
ATPAF1-213ENST00000574428 BCL11AQ9H165 835 aa29.79■■■□□ 2.36
ATPAF1-213ENST00000574428 PARP3Q9Y6F1 533 aa29.79■■■□□ 2.36
ATPAF1-213ENST00000574428 ST5P78524 1137 aa29.78■■■□□ 2.36
ATPAF1-213ENST00000574428 R3HDM1Q15032 1099 aaKnown RBP29.78■■■□□ 2.36
ATPAF1-213ENST00000574428 CHD1LQ86WJ1 897 aa29.78■■■□□ 2.36
ATPAF1-213ENST00000574428 NRXN2Q9P2S2 1712 aa29.77■■■□□ 2.36
ATPAF1-213ENST00000574428 SMARCA5O60264 1052 aaPredicted RBP29.77■■■□□ 2.36
ATPAF1-213ENST00000574428 NLRP3Q96P20 1036 aa29.77■■■□□ 2.36
ATPAF1-213ENST00000574428 ANKRD18BA2A2Z9 1011 aa29.77■■■□□ 2.36
ATPAF1-213ENST00000574428 HSP90AB4PQ58FF6 505 aa29.77■■■□□ 2.36
ATPAF1-213ENST00000574428 RAB11FIP3O75154 756 aa29.76■■■□□ 2.35
ATPAF1-213ENST00000574428 G3BP1Q13283 466 aaKnown RBP eCLIP29.76■■■□□ 2.35
ATPAF1-213ENST00000574428 TAF7LQ5H9L4 462 aa29.76■■■□□ 2.35
ATPAF1-213ENST00000574428 RTL9Q8NET4 1388 aa29.75■■■□□ 2.35
ATPAF1-213ENST00000574428 SF3B3Q15393 1217 aaKnown RBP29.75■■■□□ 2.35
ATPAF1-213ENST00000574428 LRRCC1Q9C099 1032 aa29.75■■■□□ 2.35
ATPAF1-213ENST00000574428 SLC16A10Q8TF71 515 aa29.75■■■□□ 2.35
ATPAF1-213ENST00000574428 SEC31BQ9NQW1 1179 aa29.75■■■□□ 2.35
ATPAF1-213ENST00000574428 RIC1Q4ADV7 1423 aa29.74■■■□□ 2.35
ATPAF1-213ENST00000574428 ZBTB47Q9UFB7 747 aaPredicted RBP29.74■■■□□ 2.35
ATPAF1-213ENST00000574428 RHPN1Q8TCX5 695 aa29.73■■■□□ 2.35
ATPAF1-213ENST00000574428 PDE4AP27815 886 aa29.72■■■□□ 2.35
ATPAF1-213ENST00000574428 RGS3P49796 1198 aa29.72■■■□□ 2.35
ATPAF1-213ENST00000574428 ERC1Q8IUD2 1116 aa29.72■■■□□ 2.35
ATPAF1-213ENST00000574428 KIF1BPQ96EK5 621 aa29.72■■■□□ 2.35
ATPAF1-213ENST00000574428 PUS3Q9BZE2 481 aaKnown RBP29.72■■■□□ 2.35
ATPAF1-213ENST00000574428 IL1RAPL2Q9NP60 686 aa29.72■■■□□ 2.35
ATPAF1-213ENST00000574428 COL4A1P02462 1669 aa29.71■■■□□ 2.35
ATPAF1-213ENST00000574428 SASH1O94885 1247 aa29.71■■■□□ 2.35
ATPAF1-213ENST00000574428 LRRC24Q50LG9 513 aa29.71■■■□□ 2.35
ATPAF1-213ENST00000574428 PSDA5PKW4 1024 aaPredicted RBP29.7■■■□□ 2.35
ATPAF1-213ENST00000574428 EYA2O00167 538 aa29.7■■■□□ 2.35
ATPAF1-213ENST00000574428 ZBTB7AO95365 584 aa29.7■■■□□ 2.35
ATPAF1-213ENST00000574428 ATG9AQ7Z3C6 839 aa29.7■■■□□ 2.35
ATPAF1-213ENST00000574428 LRP5O75197 1615 aa29.7■■■□□ 2.35
ATPAF1-213ENST00000574428 ANKRD31Q8N7Z5 1873 aa29.69■■■□□ 2.34
ATPAF1-213ENST00000574428 C16orf71Q8IYS4 520 aaPredicted RBP29.69■■■□□ 2.34
ATPAF1-213ENST00000574428 TSHZ2Q9NRE2 1034 aa29.69■■■□□ 2.34
ATPAF1-213ENST00000574428 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP29.69■■■□□ 2.34
ATPAF1-213ENST00000574428 CIAO1O76071 339 aa29.68■■■□□ 2.34
ATPAF1-213ENST00000574428 SPEF2Q9C093 1822 aa29.68■■■□□ 2.34
ATPAF1-213ENST00000574428 LDHAL6AQ6ZMR3 332 aa29.67■■■□□ 2.34
ATPAF1-213ENST00000574428 TAF1P21675 1872 aa29.67■■■□□ 2.34
ATPAF1-213ENST00000574428 IL15P40933 162 aaPredicted RBP29.67■■■□□ 2.34
ATPAF1-213ENST00000574428 BRIP1Q9BX63 1249 aa29.67■■■□□ 2.34
ATPAF1-213ENST00000574428 TFCP2Q12800 502 aa29.66■■■□□ 2.34
ATPAF1-213ENST00000574428 OTUD7AQ8TE49 926 aaPredicted RBP29.66■■■□□ 2.34
ATPAF1-213ENST00000574428 CDC5LQ99459 802 aaKnown RBP29.66■■■□□ 2.34
ATPAF1-213ENST00000574428 CRY2Q49AN0 593 aa29.65■■■□□ 2.34
ATPAF1-213ENST00000574428 CNNM1Q9NRU3 951 aa29.65■■■□□ 2.34
ATPAF1-213ENST00000574428 FBXO3Q9UK99 471 aa29.65■■■□□ 2.34
ATPAF1-213ENST00000574428 IGHMBP2P38935 993 aaKnown RBP29.64■■■□□ 2.34
ATPAF1-213ENST00000574428 DDX46Q7L014 1031 aaKnown RBP29.64■■■□□ 2.34
ATPAF1-213ENST00000574428 RPGRQ92834 1020 aaKnown RBP29.64■■■□□ 2.34
ATPAF1-213ENST00000574428 CELF1Q92879 486 aaKnown RBP29.64■■■□□ 2.34
ATPAF1-213ENST00000574428 MPHOSPH8Q99549 860 aa29.64■■■□□ 2.34
ATPAF1-213ENST00000574428 MTFR1LQ9H019 292 aa29.64■■■□□ 2.34
ATPAF1-213ENST00000574428 ATF5Q9Y2D1 282 aaPredicted RBP29.64■■■□□ 2.34
ATPAF1-213ENST00000574428 RIPOR2Q9Y4F9 1068 aa29.64■■■□□ 2.34
ATPAF1-213ENST00000574428 ANKRD18AQ8IVF6 992 aa29.63■■■□□ 2.33
ATPAF1-213ENST00000574428 KLRG2A4D1S0 409 aaPredicted RBP29.62■■■□□ 2.33
ATPAF1-213ENST00000574428 CLASRPQ8N2M8 674 aaKnown RBP29.62■■■□□ 2.33
ATPAF1-213ENST00000574428 PDE6BP35913 854 aa29.6■■■□□ 2.33
ATPAF1-213ENST00000574428 COL11A2P13942 1736 aaPredicted RBP29.6■■■□□ 2.33
ATPAF1-213ENST00000574428 METTL24Q5JXM2 366 aa29.59■■■□□ 2.33
ATPAF1-213ENST00000574428 AACSQ86V21 672 aa29.59■■■□□ 2.33
ATPAF1-213ENST00000574428 RPS8P62241 208 aaKnown RBP29.59■■■□□ 2.33
ATPAF1-213ENST00000574428 PLEKHM2Q8IWE5 1019 aa29.59■■■□□ 2.33
ATPAF1-213ENST00000574428 EAF2Q96CJ1 260 aaPredicted RBP29.59■■■□□ 2.33
ATPAF1-213ENST00000574428 CEP126Q9P2H0 1117 aa29.59■■■□□ 2.33
ATPAF1-213ENST00000574428 GRAPQ13588 217 aa29.57■■■□□ 2.32
ATPAF1-213ENST00000574428 TNNI3KQ59H18 835 aa29.57■■■□□ 2.32
ATPAF1-213ENST00000574428 GRAPLQ8TC17 118 aaPredicted RBP29.57■■■□□ 2.32
ATPAF1-213ENST00000574428 RBM17Q96I25 401 aaKnown RBP29.57■■■□□ 2.32
ATPAF1-213ENST00000574428 FPGT-TNNI3KV9GXZ4 949 aa29.57■■■□□ 2.32
Retrieved 100 of 20,778 RNA–protein pairs in 7 ms