RNA–Protein interactions for RNA: ENST00000574163.1

NDE1-210, Transcript of nudE neurodevelopment protein 1, humanhuman

TSL 3

Gene NDE1, Length 352 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NDE1-210ENST00000574163 LMNB1P20700 586 aa12.45□□□□□ -0.42
NDE1-210ENST00000574163 SF3B3Q15393 1217 aaKnown RBP12.45□□□□□ -0.42
NDE1-210ENST00000574163 TMC4Q7Z404 712 aa12.45□□□□□ -0.42
NDE1-210ENST00000574163 SYNE4Q8N205 404 aa12.45□□□□□ -0.42
NDE1-210ENST00000574163 ZNF784Q8NCA9 323 aaPredicted RBP12.45□□□□□ -0.42
NDE1-210ENST00000574163 TAOK3Q9H2K8 898 aa12.45□□□□□ -0.42
NDE1-210ENST00000574163 RTL9Q8NET4 1388 aa12.44□□□□□ -0.42
NDE1-210ENST00000574163 PPEF1O14829 653 aaPredicted RBP12.44□□□□□ -0.42
NDE1-210ENST00000574163 BRPF1P55201 1214 aaPredicted RBP12.44□□□□□ -0.42
NDE1-210ENST00000574163 RASSF7Q02833 373 aa12.44□□□□□ -0.42
NDE1-210ENST00000574163 GRAPQ13588 217 aa12.44□□□□□ -0.42
NDE1-210ENST00000574163 C9orf131Q5VYM1 1079 aa12.44□□□□□ -0.42
NDE1-210ENST00000574163 DDX46Q7L014 1031 aaKnown RBP12.44□□□□□ -0.42
NDE1-210ENST00000574163 RTKN2Q8IZC4 609 aa12.44□□□□□ -0.42
NDE1-210ENST00000574163 MRPL50Q8N5N7 158 aaKnown RBP12.44□□□□□ -0.42
NDE1-210ENST00000574163 GRAPLQ8TC17 118 aaPredicted RBP12.44□□□□□ -0.42
NDE1-210ENST00000574163 SSH1Q8WYL5 1049 aa12.44□□□□□ -0.42
NDE1-210ENST00000574163 RNF181Q9P0P0 153 aa12.44□□□□□ -0.42
NDE1-210ENST00000574163 LTBP1Q14766 1721 aa12.44□□□□□ -0.42
NDE1-210ENST00000574163 TAF1P21675 1872 aa12.44□□□□□ -0.42
NDE1-210ENST00000574163 PDE8AO60658 829 aa12.43□□□□□ -0.42
NDE1-210ENST00000574163 BBOX1O75936 387 aa12.43□□□□□ -0.42
NDE1-210ENST00000574163 FKBP4Q02790 459 aaKnown RBP eCLIP12.43□□□□□ -0.42
NDE1-210ENST00000574163 GCKRQ14397 625 aa12.43□□□□□ -0.42
NDE1-210ENST00000574163 CWF19L2Q2TBE0 894 aaKnown RBP12.43□□□□□ -0.42
NDE1-210ENST00000574163 PSMD1Q99460 953 aa12.43□□□□□ -0.42
NDE1-210ENST00000574163 SMC4Q9NTJ3 1288 aa12.43□□□□□ -0.42
NDE1-210ENST00000574163 KIF16BQ96L93 1317 aa12.42□□□□□ -0.42
NDE1-210ENST00000574163 F6X3S4 739 aa12.42□□□□□ -0.42
NDE1-210ENST00000574163 H7C1W4 665 aa12.42□□□□□ -0.42
NDE1-210ENST00000574163 ABCB7O75027 752 aa12.42□□□□□ -0.42
NDE1-210ENST00000574163 ALDH1L1O75891 902 aa12.42□□□□□ -0.42
NDE1-210ENST00000574163 CTSWP56202 376 aa12.42□□□□□ -0.42
NDE1-210ENST00000574163 CCDC152Q4G0S7 254 aa12.42□□□□□ -0.42
NDE1-210ENST00000574163 BEND3Q5T5X7 828 aa12.42□□□□□ -0.42
NDE1-210ENST00000574163 PLA2G12BQ9BX93 195 aa12.42□□□□□ -0.42
NDE1-210ENST00000574163 ATP6V0A2Q9Y487 856 aa12.42□□□□□ -0.42
NDE1-210ENST00000574163 DUOX1Q9NRD9 1551 aa12.42□□□□□ -0.42
NDE1-210ENST00000574163 CASP7P55210 303 aa12.41□□□□□ -0.42
NDE1-210ENST00000574163 RTL5Q5HYW3 569 aaPredicted RBP12.41□□□□□ -0.42
NDE1-210ENST00000574163 UBE3BQ7Z3V4 1068 aa12.41□□□□□ -0.42
NDE1-210ENST00000574163 TMX4Q9H1E5 349 aaPredicted RBP12.41□□□□□ -0.42
NDE1-210ENST00000574163 SPEF2Q9C093 1822 aa12.41□□□□□ -0.42
NDE1-210ENST00000574163 COL4A1P02462 1669 aa12.41□□□□□ -0.42
NDE1-210ENST00000574163 PRELPP51888 382 aa12.4□□□□□ -0.42
NDE1-210ENST00000574163 RARSP54136 660 aaKnown RBP12.4□□□□□ -0.42
NDE1-210ENST00000574163 SRCIN1Q9C0H9 1055 aa12.4□□□□□ -0.42
NDE1-210ENST00000574163 GRM8O00222 908 aa12.39□□□□□ -0.43
NDE1-210ENST00000574163 SP8Q8IXZ3 490 aa12.39□□□□□ -0.43
NDE1-210ENST00000574163 BCL2L13Q9BXK5 485 aa12.39□□□□□ -0.43
NDE1-210ENST00000574163 WDR90Q96KV7 1748 aa12.39□□□□□ -0.43
NDE1-210ENST00000574163 KDM2BQ8NHM5 1336 aa12.38□□□□□ -0.43
NDE1-210ENST00000574163 OLFM4Q6UX06 510 aa12.38□□□□□ -0.43
NDE1-210ENST00000574163 SUPT20HQ8NEM7 779 aa12.38□□□□□ -0.43
NDE1-210ENST00000574163 CDC5LQ99459 802 aaKnown RBP12.38□□□□□ -0.43
NDE1-210ENST00000574163 RTFDC1Q9BY42 306 aaPredicted RBP12.38□□□□□ -0.43
NDE1-210ENST00000574163 API5Q9BZZ5 524 aaKnown RBP12.38□□□□□ -0.43
NDE1-210ENST00000574163 VPS33BQ9H267 617 aa12.38□□□□□ -0.43
NDE1-210ENST00000574163 GPBP1L1Q9HC44 474 aaPredicted RBP12.38□□□□□ -0.43
NDE1-210ENST00000574163 A0A1B0GUL6 1792 aa12.38□□□□□ -0.43
NDE1-210ENST00000574163 UTYO14607 1347 aa12.37□□□□□ -0.43
NDE1-210ENST00000574163 IARSP41252 1262 aaKnown RBP12.37□□□□□ -0.43
NDE1-210ENST00000574163 RPS8P62241 208 aaKnown RBP12.37□□□□□ -0.43
NDE1-210ENST00000574163 SLC4A10Q6U841 1118 aa12.37□□□□□ -0.43
NDE1-210ENST00000574163 TTLL11Q8NHH1 800 aa12.37□□□□□ -0.43
NDE1-210ENST00000574163 ARHGAP45Q92619 1136 aa12.37□□□□□ -0.43
NDE1-210ENST00000574163 CELF1Q92879 486 aaKnown RBP12.37□□□□□ -0.43
NDE1-210ENST00000574163 COL4A5P29400 1685 aa12.37□□□□□ -0.43
NDE1-210ENST00000574163 CSF1RP07333 972 aa12.36□□□□□ -0.43
NDE1-210ENST00000574163 DPP8Q6V1X1 898 aaPredicted RBP12.36□□□□□ -0.43
NDE1-210ENST00000574163 JARID2Q92833 1246 aaPredicted RBP12.36□□□□□ -0.43
NDE1-210ENST00000574163 ZNF277Q9NRM2 450 aaPredicted RBP12.36□□□□□ -0.43
NDE1-210ENST00000574163 C9orf78Q9NZ63 289 aaPredicted RBP12.36□□□□□ -0.43
NDE1-210ENST00000574163 SCN4AP35499 1836 aa12.35□□□□□ -0.43
NDE1-210ENST00000574163 GLTPD2A6NH11 291 aa12.35□□□□□ -0.43
NDE1-210ENST00000574163 CCT4P50991 539 aaKnown RBP12.35□□□□□ -0.43
NDE1-210ENST00000574163 ANKRD18AQ8IVF6 992 aa12.35□□□□□ -0.43
NDE1-210ENST00000574163 MPNDQ8N594 471 aa12.35□□□□□ -0.43
NDE1-210ENST00000574163 GREM2Q9H772 168 aa12.35□□□□□ -0.43
NDE1-210ENST00000574163 SEC31BQ9NQW1 1179 aa12.35□□□□□ -0.43
NDE1-210ENST00000574163 IPO8O15397 1037 aaKnown RBP12.34□□□□□ -0.43
NDE1-210ENST00000574163 FAM161AQ3B820 660 aa12.34□□□□□ -0.43
NDE1-210ENST00000574163 SLC51AQ86UW1 340 aa12.34□□□□□ -0.43
NDE1-210ENST00000574163 PODXL2Q9NZ53 605 aa12.34□□□□□ -0.43
NDE1-210ENST00000574163 NOB1Q9ULX3 412 aaKnown RBP12.34□□□□□ -0.43
NDE1-210ENST00000574163 PSME4Q14997 1843 aa12.34□□□□□ -0.43
NDE1-210ENST00000574163 FZD9O00144 591 aa12.33□□□□□ -0.44
NDE1-210ENST00000574163 PPIP5K2O43314 1243 aa12.33□□□□□ -0.44
NDE1-210ENST00000574163 ITGA6P23229 1130 aa12.33□□□□□ -0.44
NDE1-210ENST00000574163 DSG3P32926 999 aa12.33□□□□□ -0.44
NDE1-210ENST00000574163 FOXO4P98177 505 aa12.33□□□□□ -0.44
NDE1-210ENST00000574163 KIAA2012Q0VF49 1180 aa12.33□□□□□ -0.44
NDE1-210ENST00000574163 DPY19L2Q6NUT2 758 aa12.33□□□□□ -0.44
NDE1-210ENST00000574163 LARGE2Q8N3Y3 721 aa12.33□□□□□ -0.44
NDE1-210ENST00000574163 ZNF526Q8TF50 670 aaPredicted RBP12.33□□□□□ -0.44
NDE1-210ENST00000574163 JDP2Q8WYK2 163 aa12.33□□□□□ -0.44
NDE1-210ENST00000574163 BSDC1Q9NW68 430 aaPredicted RBP12.33□□□□□ -0.44
NDE1-210ENST00000574163 XDHP47989 1333 aa12.33□□□□□ -0.44
NDE1-210ENST00000574163 SPDYE4A6NLX3 237 aa12.32□□□□□ -0.44
NDE1-210ENST00000574163 IGHMBP2P38935 993 aaKnown RBP12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms