RNA–Protein interactions for RNA: ENST00000573474.5

CCDC40-209, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 554 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-209ENST00000573474 IFIT5Q13325 482 aaKnown RBP16.9■□□□□ 0.3
CCDC40-209ENST00000573474 SLC15A2Q16348 729 aa16.9■□□□□ 0.3
CCDC40-209ENST00000573474 ERFEQ4G0M1 354 aa16.9■□□□□ 0.3
CCDC40-209ENST00000573474 DEFB132Q7Z7B7 95 aa16.9■□□□□ 0.3
CCDC40-209ENST00000573474 KLHDC4Q8TBB5 520 aa16.9■□□□□ 0.3
CCDC40-209ENST00000573474 FAM161AQ3B820 660 aa16.89■□□□□ 0.29
CCDC40-209ENST00000573474 C16orf71Q8IYS4 520 aaPredicted RBP16.89■□□□□ 0.29
CCDC40-209ENST00000573474 SIL1Q9H173 461 aa16.89■□□□□ 0.29
CCDC40-209ENST00000573474 PNPLA7Q6ZV29 1317 aa16.89■□□□□ 0.29
CCDC40-209ENST00000573474 ANKRD18BA2A2Z9 1011 aa16.88■□□□□ 0.29
CCDC40-209ENST00000573474 CCDC152Q4G0S7 254 aa16.88■□□□□ 0.29
CCDC40-209ENST00000573474 NLGN1Q8N2Q7 840 aa16.88■□□□□ 0.29
CCDC40-209ENST00000573474 CCDC85AQ96PX6 553 aaPredicted RBP16.88■□□□□ 0.29
CCDC40-209ENST00000573474 GREM2Q9H772 168 aa16.88■□□□□ 0.29
CCDC40-209ENST00000573474 ANO8Q9HCE9 1232 aaPredicted RBP16.88■□□□□ 0.29
CCDC40-209ENST00000573474 FBXO3Q9UK99 471 aa16.88■□□□□ 0.29
CCDC40-209ENST00000573474 COL24A1Q17RW2 1714 aa16.87■□□□□ 0.29
CCDC40-209ENST00000573474 CIAO1O76071 339 aa16.87■□□□□ 0.29
CCDC40-209ENST00000573474 SASH1O94885 1247 aa16.87■□□□□ 0.29
CCDC40-209ENST00000573474 ITGA6P23229 1130 aa16.87■□□□□ 0.29
CCDC40-209ENST00000573474 TAF7LQ5H9L4 462 aa16.87■□□□□ 0.29
CCDC40-209ENST00000573474 PLEKHM2Q8IWE5 1019 aa16.87■□□□□ 0.29
CCDC40-209ENST00000573474 BCL11AQ9H165 835 aa16.87■□□□□ 0.29
CCDC40-209ENST00000573474 IL1RAPL2Q9NP60 686 aa16.87■□□□□ 0.29
CCDC40-209ENST00000573474 EYA2O00167 538 aa16.86■□□□□ 0.29
CCDC40-209ENST00000573474 IL15P40933 162 aaPredicted RBP16.86■□□□□ 0.29
CCDC40-209ENST00000573474 SF3B3Q15393 1217 aaKnown RBP16.86■□□□□ 0.29
CCDC40-209ENST00000573474 CLASRPQ8N2M8 674 aaKnown RBP16.86■□□□□ 0.29
CCDC40-209ENST00000573474 ZNF594Q96JF6 807 aaPredicted RBP16.86■□□□□ 0.29
CCDC40-209ENST00000573474 RTL9Q8NET4 1388 aa16.86■□□□□ 0.29
CCDC40-209ENST00000573474 NPHP1O15259 732 aa16.85■□□□□ 0.29
CCDC40-209ENST00000573474 SERPINB2P05120 415 aa16.85■□□□□ 0.29
CCDC40-209ENST00000573474 ATG9AQ7Z3C6 839 aa16.85■□□□□ 0.29
CCDC40-209ENST00000573474 CNBD1Q8NA66 436 aa16.85■□□□□ 0.29
CCDC40-209ENST00000573474 OTUD7AQ8TE49 926 aaPredicted RBP16.85■□□□□ 0.29
CCDC40-209ENST00000573474 NLRP3Q96P20 1036 aa16.85■□□□□ 0.29
CCDC40-209ENST00000573474 LAMB2P55268 1798 aa16.84■□□□□ 0.29
CCDC40-209ENST00000573474 TUBGCP6Q96RT7 1819 aa16.84■□□□□ 0.29
CCDC40-209ENST00000573474 OSBPL3Q9H4L5 887 aa16.84■□□□□ 0.29
CCDC40-209ENST00000573474 STAP2Q9UGK3 403 aa16.84■□□□□ 0.29
CCDC40-209ENST00000573474 ABCC12Q96J65 1359 aa16.84■□□□□ 0.29
CCDC40-209ENST00000573474 DDX60Q8IY21 1712 aaKnown RBP16.84■□□□□ 0.29
CCDC40-209ENST00000573474 MYH3P11055 1940 aa16.84■□□□□ 0.29
CCDC40-209ENST00000573474 POLRMTO00411 1230 aaKnown RBP16.83■□□□□ 0.28
CCDC40-209ENST00000573474 MX1P20591 662 aa16.83■□□□□ 0.28
CCDC40-209ENST00000573474 PDE1AP54750 535 aa16.83■□□□□ 0.28
CCDC40-209ENST00000573474 DDR1Q08345 913 aa16.83■□□□□ 0.28
CCDC40-209ENST00000573474 TFCP2Q12800 502 aa16.83■□□□□ 0.28
CCDC40-209ENST00000573474 LRRC24Q50LG9 513 aa16.83■□□□□ 0.28
CCDC40-209ENST00000573474 PRR5LQ6MZQ0 368 aa16.83■□□□□ 0.28
CCDC40-209ENST00000573474 SALL3Q9BXA9 1300 aa16.83■□□□□ 0.28
CCDC40-209ENST00000573474 PUS3Q9BZE2 481 aaKnown RBP16.83■□□□□ 0.28
CCDC40-209ENST00000573474 IFIT2P09913 472 aaKnown RBP16.82■□□□□ 0.28
CCDC40-209ENST00000573474 ST5P78524 1137 aa16.82■□□□□ 0.28
CCDC40-209ENST00000573474 LDHAL6AQ6ZMR3 332 aa16.82■□□□□ 0.28
CCDC40-209ENST00000573474 C3orf67Q6ZVT6 689 aa16.82■□□□□ 0.28
CCDC40-209ENST00000573474 GPR108Q9NPR9 543 aa16.82■□□□□ 0.28
CCDC40-209ENST00000573474 CEP126Q9P2H0 1117 aa16.82■□□□□ 0.28
CCDC40-209ENST00000573474 RIC1Q4ADV7 1423 aa16.81■□□□□ 0.28
CCDC40-209ENST00000573474 AOX1Q06278 1338 aa16.81■□□□□ 0.28
CCDC40-209ENST00000573474 BMP2KLQ5H9B9 411 aa16.81■□□□□ 0.28
CCDC40-209ENST00000573474 AACSQ86V21 672 aa16.81■□□□□ 0.28
CCDC40-209ENST00000573474 CDC5LQ99459 802 aaKnown RBP16.81■□□□□ 0.28
CCDC40-209ENST00000573474 SEC31BQ9NQW1 1179 aa16.81■□□□□ 0.28
CCDC40-209ENST00000573474 CNNM1Q9NRU3 951 aa16.81■□□□□ 0.28
CCDC40-209ENST00000573474 RIPOR2Q9Y4F9 1068 aa16.81■□□□□ 0.28
CCDC40-209ENST00000573474 QSER1Q2KHR3 1735 aa16.81■□□□□ 0.28
CCDC40-209ENST00000573474 IGHMBP2P38935 993 aaKnown RBP16.8■□□□□ 0.28
CCDC40-209ENST00000573474 TNNI3KQ59H18 835 aa16.8■□□□□ 0.28
CCDC40-209ENST00000573474 TTC22Q5TAA0 569 aa16.8■□□□□ 0.28
CCDC40-209ENST00000573474 CCDC24Q8N4L8 307 aa16.8■□□□□ 0.28
CCDC40-209ENST00000573474 UPF1Q92900 1129 aaKnown RBP eCLIP16.8■□□□□ 0.28
CCDC40-209ENST00000573474 EAF2Q96CJ1 260 aaPredicted RBP16.8■□□□□ 0.28
CCDC40-209ENST00000573474 GPATCH3Q96I76 525 aa16.8■□□□□ 0.28
CCDC40-209ENST00000573474 PARP3Q9Y6F1 533 aa16.8■□□□□ 0.28
CCDC40-209ENST00000573474 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP16.8■□□□□ 0.28
CCDC40-209ENST00000573474 FPGT-TNNI3KV9GXZ4 949 aa16.8■□□□□ 0.28
CCDC40-209ENST00000573474 MPHOSPH8Q99549 860 aa16.79■□□□□ 0.28
CCDC40-209ENST00000573474 AKAP2Q9Y2D5 859 aa16.79■□□□□ 0.28
CCDC40-209ENST00000573474 TTC41PQ6P2S7 1318 aa16.78■□□□□ 0.28
CCDC40-209ENST00000573474 MROH5Q6ZUA9 1318 aa16.78■□□□□ 0.28
CCDC40-209ENST00000573474 MMP10P09238 476 aa16.78■□□□□ 0.28
CCDC40-209ENST00000573474 METTL24Q5JXM2 366 aa16.78■□□□□ 0.28
CCDC40-209ENST00000573474 DDX46Q7L014 1031 aaKnown RBP16.78■□□□□ 0.28
CCDC40-209ENST00000573474 ANKRD18AQ8IVF6 992 aa16.78■□□□□ 0.28
CCDC40-209ENST00000573474 CCDC8Q9H0W5 538 aaPredicted RBP16.78■□□□□ 0.28
CCDC40-209ENST00000573474 MSL1Q68DK7 614 aa16.77■□□□□ 0.28
CCDC40-209ENST00000573474 BACH2Q9BYV9 841 aa16.77■□□□□ 0.28
CCDC40-209ENST00000573474 ECHDC1Q9NTX5 307 aa16.77■□□□□ 0.28
CCDC40-209ENST00000573474 ERC2O15083 957 aa16.76■□□□□ 0.27
CCDC40-209ENST00000573474 GSPT1P15170 499 aaKnown RBP16.76■□□□□ 0.27
CCDC40-209ENST00000573474 RPS8P62241 208 aaKnown RBP16.76■□□□□ 0.27
CCDC40-209ENST00000573474 C8orf34Q49A92 452 aa16.76■□□□□ 0.27
CCDC40-209ENST00000573474 TSHZ3Q63HK5 1081 aa16.76■□□□□ 0.27
CCDC40-209ENST00000573474 SLC16A10Q8TF71 515 aa16.76■□□□□ 0.27
CCDC40-209ENST00000573474 BSDC1Q9NW68 430 aaPredicted RBP16.76■□□□□ 0.27
CCDC40-209ENST00000573474 LRP5O75197 1615 aa16.76■□□□□ 0.27
CCDC40-209ENST00000573474 KLRG2A4D1S0 409 aaPredicted RBP16.75■□□□□ 0.27
CCDC40-209ENST00000573474 GLRX3O76003 335 aaKnown RBP16.75■□□□□ 0.27
CCDC40-209ENST00000573474 CRY2Q49AN0 593 aa16.75■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms