RNA–Protein interactions for RNA: ENST00000572665.1

CIITA-208, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 5

Gene CIITA, Length 560 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-208ENST00000572665 ZNF592Q92610 1267 aa12.97□□□□□ -0.33
CIITA-208ENST00000572665 FOXJ1Q92949 421 aa12.97□□□□□ -0.33
CIITA-208ENST00000572665 ZBTB33Q86T24 672 aa12.96□□□□□ -0.33
CIITA-208ENST00000572665 BPHLQ86WA6 291 aaPredicted RBP12.96□□□□□ -0.33
CIITA-208ENST00000572665 CARD14Q9BXL6 1004 aa12.96□□□□□ -0.33
CIITA-208ENST00000572665 PCDHB9Q9Y5E1 797 aa12.96□□□□□ -0.33
CIITA-208ENST00000572665 SRCAPQ6ZRS2 3230 aa12.96□□□□□ -0.33
CIITA-208ENST00000572665 ZBTB24O43167 697 aaPredicted RBP12.95□□□□□ -0.34
CIITA-208ENST00000572665 MCCD1P59942 119 aaPredicted RBP12.95□□□□□ -0.34
CIITA-208ENST00000572665 PPP1R1BQ9UD71 204 aaPredicted RBP12.95□□□□□ -0.34
CIITA-208ENST00000572665 MAGEB6P1A0A0J9YX57 407 aa12.94□□□□□ -0.34
CIITA-208ENST00000572665 PALM3A6NDB9 673 aaPredicted RBP12.94□□□□□ -0.34
CIITA-208ENST00000572665 SH3BP2P78314 561 aa12.94□□□□□ -0.34
CIITA-208ENST00000572665 TRIM32Q13049 653 aa12.94□□□□□ -0.34
CIITA-208ENST00000572665 C4orf48Q5BLP8 95 aa12.94□□□□□ -0.34
CIITA-208ENST00000572665 SPON1Q9HCB6 807 aa12.94□□□□□ -0.34
CIITA-208ENST00000572665 AGERQ15109 404 aa12.93□□□□□ -0.34
CIITA-208ENST00000572665 IFFO2Q5TF58 517 aa12.93□□□□□ -0.34
CIITA-208ENST00000572665 MARCH10Q8NA82 808 aaPredicted RBP12.93□□□□□ -0.34
CIITA-208ENST00000572665 SLC12A5Q9H2X9 1139 aa12.93□□□□□ -0.34
CIITA-208ENST00000572665 NLRP2Q9NX02 1062 aa12.93□□□□□ -0.34
CIITA-208ENST00000572665 TFIP11Q9UBB9 837 aaKnown RBP12.93□□□□□ -0.34
CIITA-208ENST00000572665 TNS2Q63HR2 1409 aa12.93□□□□□ -0.34
CIITA-208ENST00000572665 FAM208AQ9UK61 1670 aaKnown RBP12.93□□□□□ -0.34
CIITA-208ENST00000572665 CD163L1Q9NR16 1453 aa12.92□□□□□ -0.34
CIITA-208ENST00000572665 KCNQ2O43526 872 aa12.92□□□□□ -0.34
CIITA-208ENST00000572665 IL2RBP14784 551 aa12.92□□□□□ -0.34
CIITA-208ENST00000572665 ERFEQ4G0M1 354 aa12.92□□□□□ -0.34
CIITA-208ENST00000572665 NME9Q86XW9 330 aa12.92□□□□□ -0.34
CIITA-208ENST00000572665 A0A1W2PP64 1363 aa12.92□□□□□ -0.34
CIITA-208ENST00000572665 PIK3CDO00329 1044 aa12.91□□□□□ -0.34
CIITA-208ENST00000572665 RPIAP49247 311 aa12.91□□□□□ -0.34
CIITA-208ENST00000572665 TBC1D9Q6ZT07 1266 aa12.91□□□□□ -0.34
CIITA-208ENST00000572665 ANKRD24Q8TF21 1146 aa12.91□□□□□ -0.34
CIITA-208ENST00000572665 C1QTNF2Q9BXJ5 285 aa12.91□□□□□ -0.34
CIITA-208ENST00000572665 CEP126Q9P2H0 1117 aa12.91□□□□□ -0.34
CIITA-208ENST00000572665 ATP9BO43861 1147 aa12.9□□□□□ -0.34
CIITA-208ENST00000572665 TRIM26Q12899 539 aaPredicted RBP12.9□□□□□ -0.34
CIITA-208ENST00000572665 CDCA8Q53HL2 280 aa12.9□□□□□ -0.34
CIITA-208ENST00000572665 DZIP3Q86Y13 1208 aaKnown RBP12.9□□□□□ -0.34
CIITA-208ENST00000572665 NFATC2IPQ8NCF5 419 aa12.9□□□□□ -0.34
CIITA-208ENST00000572665 COG3Q96JB2 828 aa12.9□□□□□ -0.34
CIITA-208ENST00000572665 STK32BQ9NY57 414 aa12.9□□□□□ -0.34
CIITA-208ENST00000572665 NHSQ6T4R5 1651 aa12.89□□□□□ -0.35
CIITA-208ENST00000572665 KAT6BQ8WYB5 2073 aa12.89□□□□□ -0.35
CIITA-208ENST00000572665 ST20-MTHFSA0A0A6YYL1 179 aa12.89□□□□□ -0.35
CIITA-208ENST00000572665 WNT7BP56706 349 aa12.89□□□□□ -0.35
CIITA-208ENST00000572665 MAFBQ9Y5Q3 323 aaPredicted RBP12.89□□□□□ -0.35
CIITA-208ENST00000572665 RFX1P22670 979 aa12.88□□□□□ -0.35
CIITA-208ENST00000572665 LMOD1P29536 600 aaPredicted RBP12.88□□□□□ -0.35
CIITA-208ENST00000572665 TMF1P82094 1093 aa12.88□□□□□ -0.35
CIITA-208ENST00000572665 SKOR1P84550 965 aa12.88□□□□□ -0.35
CIITA-208ENST00000572665 TXNRD1Q16881 649 aa12.88□□□□□ -0.35
CIITA-208ENST00000572665 FAM174AQ8TBP5 190 aa12.88□□□□□ -0.35
CIITA-208ENST00000572665 IP6K1Q92551 441 aa12.88□□□□□ -0.35
CIITA-208ENST00000572665 PBXIP1Q96AQ6 731 aa12.87□□□□□ -0.35
CIITA-208ENST00000572665 ANKRD36BQ8N2N9 1353 aa12.86□□□□□ -0.35
CIITA-208ENST00000572665 AMPHP49418 695 aa12.86□□□□□ -0.35
CIITA-208ENST00000572665 SLFNL1Q499Z3 407 aa12.86□□□□□ -0.35
CIITA-208ENST00000572665 LIAT1Q6ZQX7 453 aa12.86□□□□□ -0.35
CIITA-208ENST00000572665 TRMT44Q8IYL2 757 aaKnown RBP12.86□□□□□ -0.35
CIITA-208ENST00000572665 PHTF2Q8N3S3 785 aa12.86□□□□□ -0.35
CIITA-208ENST00000572665 EMID1Q96A84 441 aaPredicted RBP12.86□□□□□ -0.35
CIITA-208ENST00000572665 SLC10A4Q96EP9 437 aa12.86□□□□□ -0.35
CIITA-208ENST00000572665 TESK2Q96S53 571 aa12.86□□□□□ -0.35
CIITA-208ENST00000572665 CASZ1Q86V15 1759 aa12.86□□□□□ -0.35
CIITA-208ENST00000572665 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP12.85□□□□□ -0.35
CIITA-208ENST00000572665 HMGB2P26583 209 aaKnown RBP12.85□□□□□ -0.35
CIITA-208ENST00000572665 SLC15A2Q16348 729 aa12.85□□□□□ -0.35
CIITA-208ENST00000572665 RTL1A6NKG5 1358 aa12.84□□□□□ -0.35
CIITA-208ENST00000572665 BTAF1O14981 1849 aa12.84□□□□□ -0.35
CIITA-208ENST00000572665 SKIP12755 728 aa12.84□□□□□ -0.35
CIITA-208ENST00000572665 RNF135Q8IUD6 432 aa12.84□□□□□ -0.35
CIITA-208ENST00000572665 ACSBG1Q96GR2 724 aa12.84□□□□□ -0.35
CIITA-208ENST00000572665 SMG6Q86US8 1419 aaKnown RBP12.84□□□□□ -0.35
CIITA-208ENST00000572665 USP47Q96K76 1375 aa12.83□□□□□ -0.36
CIITA-208ENST00000572665 CD2BP2O95400 341 aaKnown RBP12.83□□□□□ -0.36
CIITA-208ENST00000572665 VARSP26640 1264 aaKnown RBP12.83□□□□□ -0.36
CIITA-208ENST00000572665 PTF1AQ7RTS3 328 aa12.83□□□□□ -0.36
CIITA-208ENST00000572665 LTV1Q96GA3 475 aaPredicted RBP12.83□□□□□ -0.36
CIITA-208ENST00000572665 USP17L5A8MUK1 530 aa12.82□□□□□ -0.36
CIITA-208ENST00000572665 HOXC9P31274 260 aa12.82□□□□□ -0.36
CIITA-208ENST00000572665 MTFR1LQ9H019 292 aa12.82□□□□□ -0.36
CIITA-208ENST00000572665 CDV3Q9UKY7 258 aaKnown RBP12.82□□□□□ -0.36
CIITA-208ENST00000572665 CGNL1Q0VF96 1302 aa12.82□□□□□ -0.36
CIITA-208ENST00000572665 MAP3K19Q56UN5 1328 aa12.82□□□□□ -0.36
CIITA-208ENST00000572665 KIF20BQ96Q89 1820 aa12.81□□□□□ -0.36
CIITA-208ENST00000572665 USP17L3A6NCW0 530 aa12.81□□□□□ -0.36
CIITA-208ENST00000572665 USP17L4A6NCW7 530 aa12.81□□□□□ -0.36
CIITA-208ENST00000572665 SLC27A3Q5K4L6 730 aa12.81□□□□□ -0.36
CIITA-208ENST00000572665 USP17L2Q6R6M4 530 aa12.81□□□□□ -0.36
CIITA-208ENST00000572665 USP17L1Q7RTZ2 530 aa12.81□□□□□ -0.36
CIITA-208ENST00000572665 DDX54Q8TDD1 881 aaKnown RBP12.81□□□□□ -0.36
CIITA-208ENST00000572665 PLA2G2EQ9NZK7 142 aa12.81□□□□□ -0.36
CIITA-208ENST00000572665 GIGYF1O75420 1035 aaPredicted RBP12.8□□□□□ -0.36
CIITA-208ENST00000572665 ZBTB7AO95365 584 aa12.8□□□□□ -0.36
CIITA-208ENST00000572665 YY1P25490 414 aa12.8□□□□□ -0.36
CIITA-208ENST00000572665 NBPF20Q3BBV1 942 aa12.8□□□□□ -0.36
CIITA-208ENST00000572665 PLEKHM2Q8IWE5 1019 aa12.8□□□□□ -0.36
CIITA-208ENST00000572665 PLPP7Q8NBV4 271 aa12.8□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms