RNA–Protein interactions for RNA: ENST00000572019.1

NUP88-203, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-203ENST00000572019 COPS6Q7L5N1 327 aa25.26■■□□□ 1.63
NUP88-203ENST00000572019 XAGE3Q8WTP9 111 aa25.26■■□□□ 1.63
NUP88-203ENST00000572019 YDJCA8MPS7 323 aa25.25■■□□□ 1.63
NUP88-203ENST00000572019 RAD17O75943 681 aa25.25■■□□□ 1.63
NUP88-203ENST00000572019 RIPK4P57078 832 aa25.25■■□□□ 1.63
NUP88-203ENST00000572019 DLK2Q6UY11 383 aa25.25■■□□□ 1.63
NUP88-203ENST00000572019 TRPM4Q8TD43 1214 aa25.25■■□□□ 1.63
NUP88-203ENST00000572019 DPP8Q6V1X1 898 aaPredicted RBP25.24■■□□□ 1.63
NUP88-203ENST00000572019 SAPCD2Q86UD0 394 aa25.24■■□□□ 1.63
NUP88-203ENST00000572019 SP8Q8IXZ3 490 aa25.24■■□□□ 1.63
NUP88-203ENST00000572019 CELF2O95319 508 aaKnown RBP25.23■■□□□ 1.63
NUP88-203ENST00000572019 ECE1P42892 770 aa25.23■■□□□ 1.63
NUP88-203ENST00000572019 KIAA2012Q0VF49 1180 aa25.23■■□□□ 1.63
NUP88-203ENST00000572019 MPNDQ8N594 471 aa25.23■■□□□ 1.63
NUP88-203ENST00000572019 FAM161AQ3B820 660 aa25.22■■□□□ 1.63
NUP88-203ENST00000572019 CIAPIN1Q6FI81 312 aa25.22■■□□□ 1.63
NUP88-203ENST00000572019 VPS33BQ9H267 617 aa25.22■■□□□ 1.63
NUP88-203ENST00000572019 BBOX1O75936 387 aa25.21■■□□□ 1.63
NUP88-203ENST00000572019 TMPOP42166 694 aaKnown RBP25.21■■□□□ 1.63
NUP88-203ENST00000572019 SUPT20HQ8NEM7 779 aa25.21■■□□□ 1.63
NUP88-203ENST00000572019 PGAP2Q9UHJ9 254 aa25.21■■□□□ 1.63
NUP88-203ENST00000572019 TCIRG1Q13488 830 aa25.2■■□□□ 1.62
NUP88-203ENST00000572019 ZNF408Q9H9D4 720 aa25.2■■□□□ 1.62
NUP88-203ENST00000572019 TRMT112Q9UI30 125 aaKnown RBP25.2■■□□□ 1.62
NUP88-203ENST00000572019 GRAPQ13588 217 aa25.19■■□□□ 1.62
NUP88-203ENST00000572019 GRAPLQ8TC17 118 aaPredicted RBP25.19■■□□□ 1.62
NUP88-203ENST00000572019 ZIC5Q96T25 663 aa25.19■■□□□ 1.62
NUP88-203ENST00000572019 TMX4Q9H1E5 349 aaPredicted RBP25.19■■□□□ 1.62
NUP88-203ENST00000572019 SH3TC1Q8TE82 1336 aa25.18■■□□□ 1.62
NUP88-203ENST00000572019 BCL2L13Q9BXK5 485 aa25.18■■□□□ 1.62
NUP88-203ENST00000572019 PNNQ9H307 717 aaKnown RBP25.18■■□□□ 1.62
NUP88-203ENST00000572019 ZBTB12Q9Y330 459 aaPredicted RBP25.18■■□□□ 1.62
NUP88-203ENST00000572019 SCN9AQ15858 1988 aa25.18■■□□□ 1.62
NUP88-203ENST00000572019 EGFRP00533 1210 aa25.17■■□□□ 1.62
NUP88-203ENST00000572019 DDX46Q7L014 1031 aaKnown RBP25.17■■□□□ 1.62
NUP88-203ENST00000572019 CCDC146Q8IYE0 955 aa25.17■■□□□ 1.62
NUP88-203ENST00000572019 BEGAINQ9BUH8 593 aa25.17■■□□□ 1.62
NUP88-203ENST00000572019 CHPF2Q9P2E5 772 aa25.17■■□□□ 1.62
NUP88-203ENST00000572019 CNOT7Q9UIV1 285 aaKnown RBP25.17■■□□□ 1.62
NUP88-203ENST00000572019 CCDC85CA6NKD9 419 aa25.16■■□□□ 1.62
NUP88-203ENST00000572019 MAP2K2P36507 400 aa25.16■■□□□ 1.62
NUP88-203ENST00000572019 HSP90AB3PQ58FF7 597 aa25.16■■□□□ 1.62
NUP88-203ENST00000572019 CELF1Q92879 486 aaKnown RBP25.16■■□□□ 1.62
NUP88-203ENST00000572019 NEUROD2Q15784 382 aa25.15■■□□□ 1.62
NUP88-203ENST00000572019 MICALL2Q8IY33 904 aa25.15■■□□□ 1.62
NUP88-203ENST00000572019 BABAM1Q9NWV8 329 aa25.15■■□□□ 1.62
NUP88-203ENST00000572019 CDHR2Q9BYE9 1310 aa25.14■■□□□ 1.62
NUP88-203ENST00000572019 SAMD7Q7Z3H4 446 aa25.14■■□□□ 1.62
NUP88-203ENST00000572019 USP48Q86UV5 1035 aa25.14■■□□□ 1.62
NUP88-203ENST00000572019 DBNDD1Q9H9R9 158 aa25.14■■□□□ 1.62
NUP88-203ENST00000572019 KCNQ5Q9NR82 932 aa25.14■■□□□ 1.62
NUP88-203ENST00000572019 ATP5J2-PTCD1G3V325 749 aa25.13■■□□□ 1.61
NUP88-203ENST00000572019 CHL1O00533 1208 aa25.13■■□□□ 1.61
NUP88-203ENST00000572019 TNIP1Q15025 636 aa25.13■■□□□ 1.61
NUP88-203ENST00000572019 FAM89AQ96GI7 184 aa25.13■■□□□ 1.61
NUP88-203ENST00000572019 TRIM35Q9UPQ4 493 aa25.13■■□□□ 1.61
NUP88-203ENST00000572019 PSMD14O00487 310 aa25.12■■□□□ 1.61
NUP88-203ENST00000572019 RTL5Q5HYW3 569 aaPredicted RBP25.12■■□□□ 1.61
NUP88-203ENST00000572019 ZC3H15Q8WU90 426 aaKnown RBP25.12■■□□□ 1.61
NUP88-203ENST00000572019 POLLQ9UGP5 575 aa25.12■■□□□ 1.61
NUP88-203ENST00000572019 LAS1LQ9Y4W2 734 aaKnown RBP25.12■■□□□ 1.61
NUP88-203ENST00000572019 RTL9Q8NET4 1388 aa25.11■■□□□ 1.61
NUP88-203ENST00000572019 RIMBP2O15034 1052 aa25.11■■□□□ 1.61
NUP88-203ENST00000572019 CDC37L1Q7L3B6 337 aa25.11■■□□□ 1.61
NUP88-203ENST00000572019 HHIPL1Q96JK4 782 aa25.11■■□□□ 1.61
NUP88-203ENST00000572019 ISCA1Q9BUE6 129 aa25.11■■□□□ 1.61
NUP88-203ENST00000572019 GPSM2P81274 684 aa25.1■■□□□ 1.61
NUP88-203ENST00000572019 NSFL1CQ9UNZ2 370 aaKnown RBP25.1■■□□□ 1.61
NUP88-203ENST00000572019 BRPF1P55201 1214 aaPredicted RBP25.09■■□□□ 1.61
NUP88-203ENST00000572019 TBC1D10BQ4KMP7 808 aaPredicted RBP25.09■■□□□ 1.61
NUP88-203ENST00000572019 PLBD2Q8NHP8 589 aa25.09■■□□□ 1.61
NUP88-203ENST00000572019 MCOLN1Q9GZU1 580 aa25.09■■□□□ 1.61
NUP88-203ENST00000572019 H7C1D1 291 aa25.08■■□□□ 1.61
NUP88-203ENST00000572019 LMOD3Q0VAK6 560 aa25.08■■□□□ 1.61
NUP88-203ENST00000572019 SF3B3Q15393 1217 aaKnown RBP25.08■■□□□ 1.61
NUP88-203ENST00000572019 DOK7Q18PE1 504 aa25.08■■□□□ 1.61
NUP88-203ENST00000572019 WASHC4Q2M389 1173 aa25.08■■□□□ 1.61
NUP88-203ENST00000572019 ADM5C9JUS6 153 aa25.07■■□□□ 1.6
NUP88-203ENST00000572019 HDGFL1Q5TGJ6 251 aa25.07■■□□□ 1.6
NUP88-203ENST00000572019 RGS19P49795 217 aa25.06■■□□□ 1.6
NUP88-203ENST00000572019 HUNKP57058 714 aa25.06■■□□□ 1.6
NUP88-203ENST00000572019 ANKRD13DQ6ZTN6 518 aa25.06■■□□□ 1.6
NUP88-203ENST00000572019 ASTN2O75129 1339 aaPredicted RBP25.06■■□□□ 1.6
NUP88-203ENST00000572019 FAM155AB1AL88 458 aaPredicted RBP25.05■■□□□ 1.6
NUP88-203ENST00000572019 C6orf229H3BNL8 230 aa25.05■■□□□ 1.6
NUP88-203ENST00000572019 ECE2O60344 883 aa25.05■■□□□ 1.6
NUP88-203ENST00000572019 RBM26Q5T8P6 1007 aaKnown RBP25.05■■□□□ 1.6
NUP88-203ENST00000572019 TMC4Q7Z404 712 aa25.05■■□□□ 1.6
NUP88-203ENST00000572019 DPF2Q92785 391 aa25.05■■□□□ 1.6
NUP88-203ENST00000572019 RALBP1Q15311 655 aa25.04■■□□□ 1.6
NUP88-203ENST00000572019 KRT26Q7Z3Y9 468 aa25.04■■□□□ 1.6
NUP88-203ENST00000572019 PSME4Q14997 1843 aa25.04■■□□□ 1.6
NUP88-203ENST00000572019 CA12O43570 354 aa25.03■■□□□ 1.6
NUP88-203ENST00000572019 SLC34A2O95436 690 aa25.03■■□□□ 1.6
NUP88-203ENST00000572019 MLLT1Q03111 559 aaPredicted RBP25.03■■□□□ 1.6
NUP88-203ENST00000572019 TBC1D16Q8TBP0 767 aa25.03■■□□□ 1.6
NUP88-203ENST00000572019 AKAP11Q9UKA4 1901 aa25.02■■□□□ 1.6
NUP88-203ENST00000572019 SEC31BQ9NQW1 1179 aa25.02■■□□□ 1.6
NUP88-203ENST00000572019 IRS4O14654 1257 aaPredicted RBP25.01■■□□□ 1.59
NUP88-203ENST00000572019 NOGQ13253 232 aa25.01■■□□□ 1.59
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms