RNA–Protein interactions for RNA: ENST00000570023.1

VPS39-212, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 337 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-212ENST00000570023 BEND7Q8N7W2 519 aaPredicted RBP5.85□□□□□ -1.47
VPS39-212ENST00000570023 CCER1Q8TC90 406 aaPredicted RBP5.85□□□□□ -1.47
VPS39-212ENST00000570023 BHMTQ93088 406 aa5.85□□□□□ -1.47
VPS39-212ENST00000570023 YTHDC1Q96MU7 727 aaKnown RBP5.85□□□□□ -1.47
VPS39-212ENST00000570023 FAM13BQ9NYF5 915 aa5.85□□□□□ -1.47
VPS39-212ENST00000570023 ZFATQ9P243 1243 aa5.85□□□□□ -1.47
VPS39-212ENST00000570023 MTMR7Q9Y216 660 aa5.85□□□□□ -1.47
VPS39-212ENST00000570023 MYO15BQ96JP2 1530 aa5.84□□□□□ -1.47
VPS39-212ENST00000570023 RNF225M0QZC1 329 aaPredicted RBP5.84□□□□□ -1.47
VPS39-212ENST00000570023 ALAS2P22557 587 aa5.84□□□□□ -1.47
VPS39-212ENST00000570023 ARID4AP29374 1257 aaPredicted RBP5.84□□□□□ -1.47
VPS39-212ENST00000570023 DGKGP49619 791 aa5.84□□□□□ -1.47
VPS39-212ENST00000570023 SNRPNP63162 240 aaKnown RBP5.84□□□□□ -1.47
VPS39-212ENST00000570023 CMTR1Q8N1G2 835 aaKnown RBP5.84□□□□□ -1.47
VPS39-212ENST00000570023 PIK3R5Q8WYR1 880 aa5.84□□□□□ -1.47
VPS39-212ENST00000570023 PNMA5Q96PV4 448 aa5.84□□□□□ -1.47
VPS39-212ENST00000570023 STARD13Q9Y3M8 1113 aa5.84□□□□□ -1.47
VPS39-212ENST00000570023 CNTNAP5Q8WYK1 1306 aa5.83□□□□□ -1.48
VPS39-212ENST00000570023 XYLBO75191 536 aa5.83□□□□□ -1.48
VPS39-212ENST00000570023 NFKB1P19838 968 aa5.83□□□□□ -1.48
VPS39-212ENST00000570023 TARSP26639 723 aaKnown RBP5.83□□□□□ -1.48
VPS39-212ENST00000570023 ADH7P40394 386 aa5.83□□□□□ -1.48
VPS39-212ENST00000570023 SF3B2Q13435 895 aaKnown RBP5.83□□□□□ -1.48
VPS39-212ENST00000570023 MKL2Q9ULH7 1088 aa5.83□□□□□ -1.48
VPS39-212ENST00000570023 USP20Q9Y2K6 914 aa5.83□□□□□ -1.48
VPS39-212ENST00000570023 PHF20L1A8MW92 1017 aa5.82□□□□□ -1.48
VPS39-212ENST00000570023 SASH3O75995 380 aa5.82□□□□□ -1.48
VPS39-212ENST00000570023 AMPD1P23109 780 aa5.82□□□□□ -1.48
VPS39-212ENST00000570023 RBM10P98175 930 aaKnown RBP5.82□□□□□ -1.48
VPS39-212ENST00000570023 FKBP4Q02790 459 aaKnown RBP eCLIP5.82□□□□□ -1.48
VPS39-212ENST00000570023 TRIP4Q15650 581 aaPredicted RBP5.82□□□□□ -1.48
VPS39-212ENST00000570023 PCSK7Q16549 785 aa5.82□□□□□ -1.48
VPS39-212ENST00000570023 NOM1Q5C9Z4 860 aaKnown RBP5.82□□□□□ -1.48
VPS39-212ENST00000570023 KANK3Q6NY19 840 aa5.82□□□□□ -1.48
VPS39-212ENST00000570023 PODNQ7Z5L7 613 aa5.82□□□□□ -1.48
VPS39-212ENST00000570023 TRPM4Q8TD43 1214 aa5.82□□□□□ -1.48
VPS39-212ENST00000570023 PRDM6Q9NQX0 595 aa5.82□□□□□ -1.48
VPS39-212ENST00000570023 EGFL7Q9UHF1 273 aa5.82□□□□□ -1.48
VPS39-212ENST00000570023 FAM13AO94988 1023 aa5.81□□□□□ -1.48
VPS39-212ENST00000570023 RASSF7Q02833 373 aa5.81□□□□□ -1.48
VPS39-212ENST00000570023 MTMR3Q13615 1198 aa5.81□□□□□ -1.48
VPS39-212ENST00000570023 ALKBH2Q6NS38 261 aa5.81□□□□□ -1.48
VPS39-212ENST00000570023 TXNDC2Q86VQ3 553 aa5.81□□□□□ -1.48
VPS39-212ENST00000570023 RRAGCQ9HB90 399 aa5.81□□□□□ -1.48
VPS39-212ENST00000570023 DNAJB12Q9NXW2 375 aaKnown RBP5.81□□□□□ -1.48
VPS39-212ENST00000570023 TLR7Q9NYK1 1049 aaKnown RBP5.81□□□□□ -1.48
VPS39-212ENST00000570023 SLC6A14Q9UN76 642 aa5.81□□□□□ -1.48
VPS39-212ENST00000570023 FNDC3AQ9Y2H6 1198 aaKnown RBP5.81□□□□□ -1.48
VPS39-212ENST00000570023 ZBTB42B2RXF5 422 aa5.8□□□□□ -1.48
VPS39-212ENST00000570023 PIK3R2O00459 728 aa5.8□□□□□ -1.48
VPS39-212ENST00000570023 GNB5O14775 395 aa5.8□□□□□ -1.48
VPS39-212ENST00000570023 RPLP1P05386 114 aaKnown RBP5.8□□□□□ -1.48
VPS39-212ENST00000570023 RARAP10276 462 aa5.8□□□□□ -1.48
VPS39-212ENST00000570023 HOXD8P13378 290 aaPredicted RBP5.8□□□□□ -1.48
VPS39-212ENST00000570023 MPSTP25325 297 aa5.8□□□□□ -1.48
VPS39-212ENST00000570023 IRS1P35568 1242 aa5.8□□□□□ -1.48
VPS39-212ENST00000570023 EIF1AXP47813 144 aaKnown RBP5.8□□□□□ -1.48
VPS39-212ENST00000570023 C20orf204Q6ZNR8 217 aa5.8□□□□□ -1.48
VPS39-212ENST00000570023 DHX32Q7L7V1 743 aaKnown RBP5.8□□□□□ -1.48
VPS39-212ENST00000570023 KRT25Q7Z3Z0 450 aa5.8□□□□□ -1.48
VPS39-212ENST00000570023 NLRP13Q86W25 1043 aa5.8□□□□□ -1.48
VPS39-212ENST00000570023 ATCAYQ86WG3 371 aa5.8□□□□□ -1.48
VPS39-212ENST00000570023 MICALL1Q8N3F8 863 aa5.8□□□□□ -1.48
VPS39-212ENST00000570023 GPR152Q8TDT2 470 aa5.8□□□□□ -1.48
VPS39-212ENST00000570023 UBE2OQ9C0C9 1292 aaKnown RBP5.8□□□□□ -1.48
VPS39-212ENST00000570023 BCCIPQ9P287 314 aaKnown RBP eCLIP5.8□□□□□ -1.48
VPS39-212ENST00000570023 UBAP1LF5GYI3 381 aa5.79□□□□□ -1.48
VPS39-212ENST00000570023 ICMTO60725 284 aa5.79□□□□□ -1.48
VPS39-212ENST00000570023 BRD1O95696 1058 aa5.79□□□□□ -1.48
VPS39-212ENST00000570023 MZF1P28698 734 aaPredicted RBP5.79□□□□□ -1.48
VPS39-212ENST00000570023 SOX18P35713 384 aa5.79□□□□□ -1.48
VPS39-212ENST00000570023 NRLP54845 237 aa5.79□□□□□ -1.48
VPS39-212ENST00000570023 GPLD1P80108 840 aa5.79□□□□□ -1.48
VPS39-212ENST00000570023 COL9A3Q14050 684 aaPredicted RBP5.79□□□□□ -1.48
VPS39-212ENST00000570023 ECM1Q16610 540 aa5.79□□□□□ -1.48
VPS39-212ENST00000570023 XKR5Q6UX68 686 aa5.79□□□□□ -1.48
VPS39-212ENST00000570023 M0R082 166 aa5.78□□□□□ -1.48
VPS39-212ENST00000570023 MMP20O60882 483 aa5.78□□□□□ -1.48
VPS39-212ENST00000570023 ABL1P00519 1130 aa5.78□□□□□ -1.48
VPS39-212ENST00000570023 ALBP02768 609 aa5.78□□□□□ -1.48
VPS39-212ENST00000570023 PDGFAP04085 211 aa5.78□□□□□ -1.48
VPS39-212ENST00000570023 PDE12Q6L8Q7 609 aaKnown RBP5.78□□□□□ -1.48
VPS39-212ENST00000570023 ALYREFQ86V81 257 aaKnown RBP5.78□□□□□ -1.48
VPS39-212ENST00000570023 TMEM151AQ8N4L1 468 aa5.78□□□□□ -1.48
VPS39-212ENST00000570023 ZNF417Q8TAU3 575 aa5.78□□□□□ -1.48
VPS39-212ENST00000570023 NUDT16Q96DE0 195 aaKnown RBP5.78□□□□□ -1.48
VPS39-212ENST00000570023 ZNF587Q96SQ5 575 aaPredicted RBP5.78□□□□□ -1.48
VPS39-212ENST00000570023 IGFLR1Q9H665 355 aa5.78□□□□□ -1.48
VPS39-212ENST00000570023 NAGPAQ9UK23 515 aa5.78□□□□□ -1.48
VPS39-212ENST00000570023 GNEQ9Y223 722 aaKnown RBP5.78□□□□□ -1.48
VPS39-212ENST00000570023 FZD6O60353 706 aa5.77□□□□□ -1.49
VPS39-212ENST00000570023 GDF11O95390 407 aa5.77□□□□□ -1.49
VPS39-212ENST00000570023 PSAPP07602 524 aa5.77□□□□□ -1.49
VPS39-212ENST00000570023 HSP90B1P14625 803 aaKnown RBP5.77□□□□□ -1.49
VPS39-212ENST00000570023 SERPINB4P48594 390 aa5.77□□□□□ -1.49
VPS39-212ENST00000570023 PLAURQ03405 335 aa5.77□□□□□ -1.49
VPS39-212ENST00000570023 ZNF211Q13398 564 aaPredicted RBP5.77□□□□□ -1.49
VPS39-212ENST00000570023 OR13H1Q8NG92 308 aa5.77□□□□□ -1.49
VPS39-212ENST00000570023 EDEM1Q92611 657 aa5.77□□□□□ -1.49
VPS39-212ENST00000570023 TTC9Q92623 222 aa5.77□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms