RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 PLEKHG2Q9H7P9 1386 aa12.74□□□□□ -0.37
CLK3-226ENST00000569406 SMC2O95347 1197 aa12.73□□□□□ -0.37
CLK3-226ENST00000569406 AK7Q96M32 723 aa12.73□□□□□ -0.37
CLK3-226ENST00000569406 PAXBP1Q9Y5B6 917 aa12.73□□□□□ -0.37
CLK3-226ENST00000569406 RAD50Q92878 1312 aa12.73□□□□□ -0.37
CLK3-226ENST00000569406 ECM2O94769 699 aaPredicted RBP12.73□□□□□ -0.37
CLK3-226ENST00000569406 CLEC17AQ6ZS10 378 aa12.73□□□□□ -0.37
CLK3-226ENST00000569406 HOXC9P31274 260 aa12.73□□□□□ -0.37
CLK3-226ENST00000569406 SUGP1Q8IWZ8 645 aaKnown RBP12.73□□□□□ -0.37
CLK3-226ENST00000569406 LEKR1Q6ZMV7 388 aa12.72□□□□□ -0.37
CLK3-226ENST00000569406 CEP89Q96ST8 783 aa12.72□□□□□ -0.37
CLK3-226ENST00000569406 CPSF2Q9P2I0 782 aaKnown RBP12.72□□□□□ -0.37
CLK3-226ENST00000569406 RTL1A6NKG5 1358 aa12.72□□□□□ -0.37
CLK3-226ENST00000569406 GSPT1P15170 499 aaKnown RBP12.72□□□□□ -0.37
CLK3-226ENST00000569406 RABEP1Q15276 862 aa12.72□□□□□ -0.37
CLK3-226ENST00000569406 FOXD4L6Q3SYB3 417 aaPredicted RBP12.72□□□□□ -0.37
CLK3-226ENST00000569406 FOXD4L3Q6VB84 417 aaPredicted RBP12.72□□□□□ -0.37
CLK3-226ENST00000569406 G2E3Q7L622 706 aa12.72□□□□□ -0.37
CLK3-226ENST00000569406 PDRG1Q9NUG6 133 aa12.72□□□□□ -0.37
CLK3-226ENST00000569406 ANKRD45Q5TZF3 282 aa12.71□□□□□ -0.37
CLK3-226ENST00000569406 CWC27Q6UX04 472 aaKnown RBP12.71□□□□□ -0.37
CLK3-226ENST00000569406 TRPM3Q9HCF6 1732 aaPredicted RBP12.71□□□□□ -0.37
CLK3-226ENST00000569406 HCLS1P14317 486 aaPredicted RBP12.71□□□□□ -0.37
CLK3-226ENST00000569406 PLA2G4AP47712 749 aa12.71□□□□□ -0.37
CLK3-226ENST00000569406 BMP2KLQ5H9B9 411 aa12.71□□□□□ -0.37
CLK3-226ENST00000569406 ARMC3Q5W041 872 aa12.71□□□□□ -0.37
CLK3-226ENST00000569406 DNAJC14Q6Y2X3 702 aaPredicted RBP12.71□□□□□ -0.37
CLK3-226ENST00000569406 RBM33Q96EV2 1170 aaKnown RBP12.71□□□□□ -0.37
CLK3-226ENST00000569406 CACNA1FO60840 1977 aa12.71□□□□□ -0.37
CLK3-226ENST00000569406 KDM3BQ7LBC6 1761 aa12.71□□□□□ -0.37
CLK3-226ENST00000569406 C11orf91Q3C1V1 193 aa12.71□□□□□ -0.38
CLK3-226ENST00000569406 AP1ARQ63HQ0 302 aa12.71□□□□□ -0.38
CLK3-226ENST00000569406 SYAP1Q96A49 352 aaPredicted RBP12.71□□□□□ -0.38
CLK3-226ENST00000569406 PNMA6AP0CW24 399 aaPredicted RBP12.7□□□□□ -0.38
CLK3-226ENST00000569406 MICALL1Q8N3F8 863 aa12.7□□□□□ -0.38
CLK3-226ENST00000569406 MAFGO15525 162 aa12.7□□□□□ -0.38
CLK3-226ENST00000569406 MBD3O95983 291 aa12.7□□□□□ -0.38
CLK3-226ENST00000569406 POLD1P28340 1107 aa12.7□□□□□ -0.38
CLK3-226ENST00000569406 INHBEP58166 350 aa12.7□□□□□ -0.38
CLK3-226ENST00000569406 PSMD2Q13200 908 aa12.7□□□□□ -0.38
CLK3-226ENST00000569406 GCC1Q96CN9 775 aa12.7□□□□□ -0.38
CLK3-226ENST00000569406 THOC1Q96FV9 657 aaKnown RBP12.7□□□□□ -0.38
CLK3-226ENST00000569406 CAMTA1Q9Y6Y1 1673 aa12.7□□□□□ -0.38
CLK3-226ENST00000569406 PTGS1P23219 599 aa12.7□□□□□ -0.38
CLK3-226ENST00000569406 PAX7P23759 505 aa12.7□□□□□ -0.38
CLK3-226ENST00000569406 DRC7Q8IY82 874 aa12.7□□□□□ -0.38
CLK3-226ENST00000569406 TBC1D22AQ8WUA7 517 aa12.7□□□□□ -0.38
CLK3-226ENST00000569406 DNAJC5Q9H3Z4 198 aa12.7□□□□□ -0.38
CLK3-226ENST00000569406 DCTPP1Q9H773 170 aa12.7□□□□□ -0.38
CLK3-226ENST00000569406 FHOD1Q9Y613 1164 aa12.7□□□□□ -0.38
CLK3-226ENST00000569406 JAKMIP3Q5VZ66 844 aa12.69□□□□□ -0.38
CLK3-226ENST00000569406 CEP135Q66GS9 1140 aa12.69□□□□□ -0.38
CLK3-226ENST00000569406 IL17REQ8NFR9 667 aa12.69□□□□□ -0.38
CLK3-226ENST00000569406 NCAPD2Q15021 1401 aa12.69□□□□□ -0.38
CLK3-226ENST00000569406 CTAGE5O15320 804 aa12.69□□□□□ -0.38
CLK3-226ENST00000569406 SKIDA1Q1XH10 827 aa12.69□□□□□ -0.38
CLK3-226ENST00000569406 CCDC97Q96F63 343 aaPredicted RBP12.69□□□□□ -0.38
CLK3-226ENST00000569406 LMO7Q8WWI1 1683 aa12.69□□□□□ -0.38
CLK3-226ENST00000569406 PTPRCP08575 1304 aa12.69□□□□□ -0.38
CLK3-226ENST00000569406 AK9Q5TCS8 1911 aa12.69□□□□□ -0.38
CLK3-226ENST00000569406 CEP85Q6P2H3 762 aa12.69□□□□□ -0.38
CLK3-226ENST00000569406 NOL8Q76FK4 1167 aaKnown RBP12.69□□□□□ -0.38
CLK3-226ENST00000569406 NGDNQ8NEJ9 315 aaKnown RBP12.69□□□□□ -0.38
CLK3-226ENST00000569406 API5Q9BZZ5 524 aaKnown RBP12.69□□□□□ -0.38
CLK3-226ENST00000569406 SETD1BQ9UPS6 1966 aaKnown RBP12.68□□□□□ -0.38
CLK3-226ENST00000569406 UVSSAQ2YD98 709 aa12.68□□□□□ -0.38
CLK3-226ENST00000569406 PLEKHM2Q8IWE5 1019 aa12.68□□□□□ -0.38
CLK3-226ENST00000569406 C16orf71Q8IYS4 520 aaPredicted RBP12.68□□□□□ -0.38
CLK3-226ENST00000569406 OTUD7AQ8TE49 926 aaPredicted RBP12.68□□□□□ -0.38
CLK3-226ENST00000569406 MEIS3Q99687 375 aa12.68□□□□□ -0.38
CLK3-226ENST00000569406 IBSPP21815 317 aaPredicted RBP12.68□□□□□ -0.38
CLK3-226ENST00000569406 OAS2P29728 719 aaKnown RBP12.68□□□□□ -0.38
CLK3-226ENST00000569406 SF3A1Q15459 793 aaKnown RBP12.68□□□□□ -0.38
CLK3-226ENST00000569406 ZRSR1Q15695 479 aaKnown RBP12.68□□□□□ -0.38
CLK3-226ENST00000569406 NLRP6P59044 892 aa12.68□□□□□ -0.38
CLK3-226ENST00000569406 LRMPQ12912 555 aa12.68□□□□□ -0.38
CLK3-226ENST00000569406 ANKRD44Q8N8A2 993 aa12.68□□□□□ -0.38
CLK3-226ENST00000569406 FAM210AQ96ND0 272 aa12.68□□□□□ -0.38
CLK3-226ENST00000569406 BIN2Q9UBW5 565 aaPredicted RBP12.68□□□□□ -0.38
CLK3-226ENST00000569406 CEMIPQ8WUJ3 1361 aa12.67□□□□□ -0.38
CLK3-226ENST00000569406 CCDC96Q2M329 555 aa12.67□□□□□ -0.38
CLK3-226ENST00000569406 GBP6Q6ZN66 633 aa12.67□□□□□ -0.38
CLK3-226ENST00000569406 ADGRL3Q9HAR2 1447 aa12.67□□□□□ -0.38
CLK3-226ENST00000569406 SIPA1L3O60292 1781 aaPredicted RBP12.67□□□□□ -0.38
CLK3-226ENST00000569406 KDM4AO75164 1064 aa12.67□□□□□ -0.38
CLK3-226ENST00000569406 CLCN6P51797 869 aa12.67□□□□□ -0.38
CLK3-226ENST00000569406 CRYBG1Q9Y4K1 1723 aa12.67□□□□□ -0.38
CLK3-226ENST00000569406 ACTN2P35609 894 aa12.66□□□□□ -0.38
CLK3-226ENST00000569406 ERCC6LQ2NKX8 1250 aa12.66□□□□□ -0.38
CLK3-226ENST00000569406 TMCO3Q6UWJ1 677 aa12.66□□□□□ -0.38
CLK3-226ENST00000569406 MIEF2Q96C03 454 aa12.66□□□□□ -0.38
CLK3-226ENST00000569406 ERO1AQ96HE7 468 aa12.66□□□□□ -0.38
CLK3-226ENST00000569406 SLIT3O75094 1523 aa12.66□□□□□ -0.38
CLK3-226ENST00000569406 IVLP07476 585 aa12.66□□□□□ -0.38
CLK3-226ENST00000569406 TBC1D9Q6ZT07 1266 aa12.66□□□□□ -0.38
CLK3-226ENST00000569406 ETAA1Q9NY74 926 aa12.66□□□□□ -0.38
CLK3-226ENST00000569406 RGPD5Q99666 1765 aa12.66□□□□□ -0.38
CLK3-226ENST00000569406 ADAMTS7Q9UKP4 1686 aa12.66□□□□□ -0.38
CLK3-226ENST00000569406 MTA1Q13330 715 aa12.66□□□□□ -0.38
CLK3-226ENST00000569406 CCDC34Q96HJ3 373 aa12.66□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms