RNA–Protein interactions for RNA: ENST00000568782.1

UBR1-207, Transcript of ubiquitin protein ligase E3 component n-recognin 1, human

TSL 3

Gene UBR1, Length 615 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UBR1-207	ENST00000568782	SMC1B	Q8NDV3	1235 aa		13.24	□□□□□ -0.29
UBR1-207	ENST00000568782	DDX60	Q8IY21	1712 aa	Known RBP	13.23	□□□□□ -0.29
UBR1-207	ENST00000568782	CCER2	I3L3R5	266 aa		13.23	□□□□□ -0.29
UBR1-207	ENST00000568782	PDE8A	O60658	829 aa		13.23	□□□□□ -0.29
UBR1-207	ENST00000568782	DDN	O94850	711 aa	Predicted RBP	13.23	□□□□□ -0.29
UBR1-207	ENST00000568782	PCCA	P05165	728 aa	Predicted RBP	13.23	□□□□□ -0.29
UBR1-207	ENST00000568782	APLP1	P51693	650 aa		13.23	□□□□□ -0.29
UBR1-207	ENST00000568782	FLII	Q13045	1269 aa		13.23	□□□□□ -0.29
UBR1-207	ENST00000568782	SF3B3	Q15393	1217 aa	Known RBP	13.23	□□□□□ -0.29
UBR1-207	ENST00000568782	CCDC152	Q4G0S7	254 aa		13.23	□□□□□ -0.29
UBR1-207	ENST00000568782	C3orf67	Q6ZVT6	689 aa		13.23	□□□□□ -0.29
UBR1-207	ENST00000568782	TAF1	P21675	1872 aa		13.23	□□□□□ -0.29
UBR1-207	ENST00000568782	SCN4A	P35499	1836 aa		13.23	□□□□□ -0.29
UBR1-207	ENST00000568782	WDR90	Q96KV7	1748 aa		13.22	□□□□□ -0.29
UBR1-207	ENST00000568782	MYH3	P11055	1940 aa		13.22	□□□□□ -0.29
UBR1-207	ENST00000568782	PPIP5K2	O43314	1243 aa		13.22	□□□□□ -0.29
UBR1-207	ENST00000568782	VAMP4	O75379	141 aa		13.22	□□□□□ -0.29
UBR1-207	ENST00000568782	LMOD1	P29536	600 aa	Predicted RBP	13.21	□□□□□ -0.29
UBR1-207	ENST00000568782	GPC2	Q8N158	579 aa		13.21	□□□□□ -0.29
UBR1-207	ENST00000568782		E9PSI1	815 aa		13.2	□□□□□ -0.3
UBR1-207	ENST00000568782		G3V3G9	751 aa		13.2	□□□□□ -0.3
UBR1-207	ENST00000568782	FZD9	O00144	591 aa		13.2	□□□□□ -0.3
UBR1-207	ENST00000568782	RPS8	P62241	208 aa	Known RBP	13.2	□□□□□ -0.3
UBR1-207	ENST00000568782	DCAF8	Q5TAQ9	597 aa		13.2	□□□□□ -0.3
UBR1-207	ENST00000568782	DNAAF4	Q8WXU2	420 aa		13.2	□□□□□ -0.3
UBR1-207	ENST00000568782	NSFL1C	Q9UNZ2	370 aa	Known RBP	13.2	□□□□□ -0.3
UBR1-207	ENST00000568782	GJA3	Q9Y6H8	435 aa		13.2	□□□□□ -0.3
UBR1-207	ENST00000568782	C6orf229	H3BNL8	230 aa		13.19	□□□□□ -0.3
UBR1-207	ENST00000568782	PNMA8A	Q86V59	439 aa	Predicted RBP	13.19	□□□□□ -0.3
UBR1-207	ENST00000568782	ANKRD18A	Q8IVF6	992 aa		13.19	□□□□□ -0.3
UBR1-207	ENST00000568782	CDC5L	Q99459	802 aa	Known RBP	13.19	□□□□□ -0.3
UBR1-207	ENST00000568782	EYA3	Q99504	573 aa		13.19	□□□□□ -0.3
UBR1-207	ENST00000568782	HACL1	Q9UJ83	578 aa		13.19	□□□□□ -0.3
UBR1-207	ENST00000568782	CLEC11A	Q9Y240	323 aa		13.19	□□□□□ -0.3
UBR1-207	ENST00000568782	CDHR2	Q9BYE9	1310 aa		13.18	□□□□□ -0.3
UBR1-207	ENST00000568782	NEURL1B	A8MQ27	555 aa		13.18	□□□□□ -0.3
UBR1-207	ENST00000568782	AOC3	Q16853	763 aa		13.18	□□□□□ -0.3
UBR1-207	ENST00000568782	WASHC4	Q2M389	1173 aa		13.18	□□□□□ -0.3
UBR1-207	ENST00000568782	CWF19L2	Q2TBE0	894 aa	Known RBP	13.18	□□□□□ -0.3
UBR1-207	ENST00000568782	G2E3	Q7L622	706 aa		13.18	□□□□□ -0.3
UBR1-207	ENST00000568782	LINS1	Q8NG48	757 aa		13.18	□□□□□ -0.3
UBR1-207	ENST00000568782	L3MBTL3	Q96JM7	780 aa	Predicted RBP	13.18	□□□□□ -0.3
UBR1-207	ENST00000568782	RTFDC1	Q9BY42	306 aa	Predicted RBP	13.18	□□□□□ -0.3
UBR1-207	ENST00000568782	ANKIB1	Q9P2G1	1089 aa		13.18	□□□□□ -0.3
UBR1-207	ENST00000568782	ZNRF3	Q9ULT6	936 aa		13.18	□□□□□ -0.3
UBR1-207	ENST00000568782	TNIP1	Q15025	636 aa		13.17	□□□□□ -0.3
UBR1-207	ENST00000568782	EAPP	Q56P03	285 aa	Predicted RBP	13.17	□□□□□ -0.3
UBR1-207	ENST00000568782	UBE3B	Q7Z3V4	1068 aa		13.17	□□□□□ -0.3
UBR1-207	ENST00000568782	JARID2	Q92833	1246 aa	Predicted RBP	13.17	□□□□□ -0.3
UBR1-207	ENST00000568782	CELF1	Q92879	486 aa	Known RBP	13.17	□□□□□ -0.3
UBR1-207	ENST00000568782	SPINK5	Q9NQ38	1064 aa	Predicted RBP	13.17	□□□□□ -0.3
UBR1-207	ENST00000568782	ZNF541	Q9H0D2	1346 aa		13.16	□□□□□ -0.3
UBR1-207	ENST00000568782	IGKV5-2	P06315	115 aa		13.16	□□□□□ -0.3
UBR1-207	ENST00000568782	EPHX2	P34913	555 aa		13.16	□□□□□ -0.3
UBR1-207	ENST00000568782	CTSW	P56202	376 aa		13.16	□□□□□ -0.3
UBR1-207	ENST00000568782	KIAA2012	Q0VF49	1180 aa		13.16	□□□□□ -0.3
UBR1-207	ENST00000568782	GCKR	Q14397	625 aa		13.16	□□□□□ -0.3
UBR1-207	ENST00000568782	DIEXF	Q68CQ4	756 aa	Known RBP	13.16	□□□□□ -0.3
UBR1-207	ENST00000568782	CHADL	Q6NUI6	762 aa		13.16	□□□□□ -0.3
UBR1-207	ENST00000568782	LDHD	Q86WU2	507 aa		13.16	□□□□□ -0.3
UBR1-207	ENST00000568782	CCDC85A	Q96PX6	553 aa	Predicted RBP	13.16	□□□□□ -0.3
UBR1-207	ENST00000568782	ZC3H12C	Q9C0D7	883 aa	Known RBP	13.16	□□□□□ -0.3
UBR1-207	ENST00000568782	POTEC	B2RU33	542 aa		13.15	□□□□□ -0.3
UBR1-207	ENST00000568782	IGHMBP2	P38935	993 aa	Known RBP	13.15	□□□□□ -0.3
UBR1-207	ENST00000568782	CIAPIN1	Q6FI81	312 aa		13.15	□□□□□ -0.3
UBR1-207	ENST00000568782	SLC4A10	Q6U841	1118 aa		13.15	□□□□□ -0.3
UBR1-207	ENST00000568782	BCL2L13	Q9BXK5	485 aa		13.15	□□□□□ -0.3
UBR1-207	ENST00000568782	TAF1D	Q9H5J8	278 aa	Predicted RBP	13.15	□□□□□ -0.3
UBR1-207	ENST00000568782	C9orf78	Q9NZ63	289 aa	Predicted RBP	13.15	□□□□□ -0.3
UBR1-207	ENST00000568782	ZNF521	Q96K83	1311 aa		13.14	□□□□□ -0.31
UBR1-207	ENST00000568782	SNED1	Q8TER0	1413 aa		13.14	□□□□□ -0.31
UBR1-207	ENST00000568782		H7C1W4	665 aa		13.14	□□□□□ -0.31
UBR1-207	ENST00000568782	RIMBP2	O15034	1052 aa		13.14	□□□□□ -0.31
UBR1-207	ENST00000568782	MPHOSPH8	Q99549	860 aa		13.14	□□□□□ -0.31
UBR1-207	ENST00000568782	SEC31B	Q9NQW1	1179 aa		13.14	□□□□□ -0.31
UBR1-207	ENST00000568782	GGA1	Q9UJY5	639 aa		13.14	□□□□□ -0.31
UBR1-207	ENST00000568782	LRRC37A	A6NMS7	1700 aa		13.13	□□□□□ -0.31
UBR1-207	ENST00000568782	UFL1	O94874	794 aa		13.13	□□□□□ -0.31
UBR1-207	ENST00000568782	GPSM2	P81274	684 aa		13.13	□□□□□ -0.31
UBR1-207	ENST00000568782	SLFN5	Q08AF3	891 aa		13.13	□□□□□ -0.31
UBR1-207	ENST00000568782	TTLL11	Q8NHH1	800 aa		13.13	□□□□□ -0.31
UBR1-207	ENST00000568782	SRCIN1	Q9C0H9	1055 aa		13.13	□□□□□ -0.31
UBR1-207	ENST00000568782	CHMP3	Q9Y3E7	222 aa		13.13	□□□□□ -0.31
UBR1-207	ENST00000568782	XDH	P47989	1333 aa		13.13	□□□□□ -0.31
UBR1-207	ENST00000568782	SPEF2	Q9C093	1822 aa		13.12	□□□□□ -0.31
UBR1-207	ENST00000568782		F6X3S4	739 aa		13.12	□□□□□ -0.31
UBR1-207	ENST00000568782	ALDH1L1	O75891	902 aa		13.12	□□□□□ -0.31
UBR1-207	ENST00000568782	ATP2B4	P23634	1241 aa		13.12	□□□□□ -0.31
UBR1-207	ENST00000568782	CXCL9	Q07325	125 aa		13.12	□□□□□ -0.31
UBR1-207	ENST00000568782	TAF7L	Q5H9L4	462 aa		13.12	□□□□□ -0.31
UBR1-207	ENST00000568782	PLA2G12B	Q9BX93	195 aa		13.12	□□□□□ -0.31
UBR1-207	ENST00000568782	GREM2	Q9H772	168 aa		13.12	□□□□□ -0.31
UBR1-207	ENST00000568782	PODXL2	Q9NZ53	605 aa		13.12	□□□□□ -0.31
UBR1-207	ENST00000568782	PTPRC	P08575	1304 aa		13.12	□□□□□ -0.31
UBR1-207	ENST00000568782	ANKRD18B	A2A2Z9	1011 aa		13.11	□□□□□ -0.31
UBR1-207	ENST00000568782		H7C1D1	291 aa		13.11	□□□□□ -0.31
UBR1-207	ENST00000568782	RAD17	O75943	681 aa		13.11	□□□□□ -0.31
UBR1-207	ENST00000568782	CT47B1	P0C2W7	299 aa	Predicted RBP	13.11	□□□□□ -0.31
UBR1-207	ENST00000568782	IFIT5	Q13325	482 aa	Known RBP	13.11	□□□□□ -0.31
UBR1-207	ENST00000568782	BEND3	Q5T5X7	828 aa		13.11	□□□□□ -0.31

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