RNA–Protein interactions for RNA: ENST00000568755.1

VPS39-211, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 581 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-211ENST00000568755 SCN9AQ15858 1988 aa13.21□□□□□ -0.29
VPS39-211ENST00000568755 BBOX1O75936 387 aa13.21□□□□□ -0.29
VPS39-211ENST00000568755 HCLS1P14317 486 aaPredicted RBP13.21□□□□□ -0.29
VPS39-211ENST00000568755 CTCFP49711 727 aaPredicted RBP13.21□□□□□ -0.29
VPS39-211ENST00000568755 FMR1Q06787 632 aaKnown RBP eCLIP13.21□□□□□ -0.29
VPS39-211ENST00000568755 DEFB115Q30KQ5 88 aa13.21□□□□□ -0.29
VPS39-211ENST00000568755 SP8Q8IXZ3 490 aa13.21□□□□□ -0.29
VPS39-211ENST00000568755 GPRC5DQ9NZD1 345 aa13.21□□□□□ -0.29
VPS39-211ENST00000568755 SH3TC1Q8TE82 1336 aa13.2□□□□□ -0.3
VPS39-211ENST00000568755 WDR33Q9C0J8 1336 aaKnown RBP13.2□□□□□ -0.3
VPS39-211ENST00000568755 CASP8AP2Q9UKL3 1982 aa13.2□□□□□ -0.3
VPS39-211ENST00000568755 CXCL9Q07325 125 aa13.2□□□□□ -0.3
VPS39-211ENST00000568755 NEUROD2Q15784 382 aa13.2□□□□□ -0.3
VPS39-211ENST00000568755 SUPT20HQ8NEM7 779 aa13.2□□□□□ -0.3
VPS39-211ENST00000568755 AIDAQ96BJ3 306 aa13.2□□□□□ -0.3
VPS39-211ENST00000568755 TMX4Q9H1E5 349 aaPredicted RBP13.2□□□□□ -0.3
VPS39-211ENST00000568755 CHPF2Q9P2E5 772 aa13.2□□□□□ -0.3
VPS39-211ENST00000568755 TRMT112Q9UI30 125 aaKnown RBP13.2□□□□□ -0.3
VPS39-211ENST00000568755 ZNRF3Q9ULT6 936 aa13.2□□□□□ -0.3
VPS39-211ENST00000568755 PSME4Q14997 1843 aa13.2□□□□□ -0.3
VPS39-211ENST00000568755 MYH3P11055 1940 aa13.19□□□□□ -0.3
VPS39-211ENST00000568755 HOXB7P09629 217 aa13.19□□□□□ -0.3
VPS39-211ENST00000568755 KIAA2012Q0VF49 1180 aa13.19□□□□□ -0.3
VPS39-211ENST00000568755 GRAPQ13588 217 aa13.19□□□□□ -0.3
VPS39-211ENST00000568755 CST9Q5W186 159 aa13.19□□□□□ -0.3
VPS39-211ENST00000568755 DPP8Q6V1X1 898 aaPredicted RBP13.19□□□□□ -0.3
VPS39-211ENST00000568755 MPNDQ8N594 471 aa13.19□□□□□ -0.3
VPS39-211ENST00000568755 GRAPLQ8TC17 118 aaPredicted RBP13.19□□□□□ -0.3
VPS39-211ENST00000568755 RUNDC1Q96C34 613 aa13.19□□□□□ -0.3
VPS39-211ENST00000568755 ADARB2Q9NS39 739 aaKnown RBP13.19□□□□□ -0.3
VPS39-211ENST00000568755 FOXD4L1Q9NU39 408 aa13.19□□□□□ -0.3
VPS39-211ENST00000568755 ABT1Q9ULW3 272 aaKnown RBP13.19□□□□□ -0.3
VPS39-211ENST00000568755 CDHR2Q9BYE9 1310 aa13.18□□□□□ -0.3
VPS39-211ENST00000568755 TRAF5O00463 557 aa13.18□□□□□ -0.3
VPS39-211ENST00000568755 MYCNP04198 464 aaPredicted RBP13.18□□□□□ -0.3
VPS39-211ENST00000568755 GMPSP49915 693 aaPredicted RBP13.18□□□□□ -0.3
VPS39-211ENST00000568755 HDGFL1Q5TGJ6 251 aa13.18□□□□□ -0.3
VPS39-211ENST00000568755 DDX46Q7L014 1031 aaKnown RBP13.18□□□□□ -0.3
VPS39-211ENST00000568755 PLBD2Q8NHP8 589 aa13.18□□□□□ -0.3
VPS39-211ENST00000568755 ISCA1Q9BUE6 129 aa13.18□□□□□ -0.3
VPS39-211ENST00000568755 YDJCA8MPS7 323 aa13.17□□□□□ -0.3
VPS39-211ENST00000568755 HSPA8P11142 646 aaKnown RBP13.17□□□□□ -0.3
VPS39-211ENST00000568755 LBX1P52954 281 aa13.17□□□□□ -0.3
VPS39-211ENST00000568755 MAP2K1Q02750 393 aaPredicted RBP13.17□□□□□ -0.3
VPS39-211ENST00000568755 DDX10Q13206 875 aaKnown RBP13.17□□□□□ -0.3
VPS39-211ENST00000568755 CIAPIN1Q6FI81 312 aa13.17□□□□□ -0.3
VPS39-211ENST00000568755 PGAP2Q9UHJ9 254 aa13.17□□□□□ -0.3
VPS39-211ENST00000568755 LAS1LQ9Y4W2 734 aaKnown RBP13.17□□□□□ -0.3
VPS39-211ENST00000568755 TLL2Q9Y6L7 1015 aa13.17□□□□□ -0.3
VPS39-211ENST00000568755 SAMD1Q6SPF0 538 aaPredicted RBP13.16□□□□□ -0.3
VPS39-211ENST00000568755 ANKRD13DQ6ZTN6 518 aa13.16□□□□□ -0.3
VPS39-211ENST00000568755 TMC4Q7Z404 712 aa13.16□□□□□ -0.3
VPS39-211ENST00000568755 ZNF428Q96B54 188 aa13.16□□□□□ -0.3
VPS39-211ENST00000568755 CAPNS2Q96L46 248 aa13.16□□□□□ -0.3
VPS39-211ENST00000568755 CFAP44Q96MT7 982 aa13.16□□□□□ -0.3
VPS39-211ENST00000568755 DBF4Q9UBU7 674 aaPredicted RBP13.16□□□□□ -0.3
VPS39-211ENST00000568755 ADAMTS8Q9UP79 889 aa13.16□□□□□ -0.3
VPS39-211ENST00000568755 CACNA1FO60840 1977 aa13.15□□□□□ -0.3
VPS39-211ENST00000568755 RAD17O75943 681 aa13.15□□□□□ -0.3
VPS39-211ENST00000568755 HIRAP54198 1017 aaPredicted RBP13.15□□□□□ -0.3
VPS39-211ENST00000568755 TNIP1Q15025 636 aa13.15□□□□□ -0.3
VPS39-211ENST00000568755 WDR43Q15061 677 aaKnown RBP eCLIP13.15□□□□□ -0.3
VPS39-211ENST00000568755 SF3B3Q15393 1217 aaKnown RBP13.15□□□□□ -0.3
VPS39-211ENST00000568755 CYP4F22Q6NT55 531 aa13.15□□□□□ -0.3
VPS39-211ENST00000568755 CELF1Q92879 486 aaKnown RBP13.15□□□□□ -0.3
VPS39-211ENST00000568755 SPEF2Q9C093 1822 aa13.15□□□□□ -0.3
VPS39-211ENST00000568755 AKAP11Q9UKA4 1901 aa13.14□□□□□ -0.31
VPS39-211ENST00000568755 SHTN1A0MZ66 631 aa13.14□□□□□ -0.31
VPS39-211ENST00000568755 ATP5J2-PTCD1G3V325 749 aa13.14□□□□□ -0.31
VPS39-211ENST00000568755 ZNF853P0CG23 659 aa13.14□□□□□ -0.31
VPS39-211ENST00000568755 ECE1P42892 770 aa13.14□□□□□ -0.31
VPS39-211ENST00000568755 TRIM28Q13263 835 aaKnown RBP13.14□□□□□ -0.31
VPS39-211ENST00000568755 DUSP27Q5VZP5 1158 aa13.14□□□□□ -0.31
VPS39-211ENST00000568755 TRPM4Q8TD43 1214 aa13.14□□□□□ -0.31
VPS39-211ENST00000568755 FAM89AQ96GI7 184 aa13.14□□□□□ -0.31
VPS39-211ENST00000568755 GLIS2Q9BZE0 524 aaPredicted RBP13.14□□□□□ -0.31
VPS39-211ENST00000568755 MBIPQ9NS73 344 aa13.14□□□□□ -0.31
VPS39-211ENST00000568755 HYPKQ9NX55 129 aa13.14□□□□□ -0.31
VPS39-211ENST00000568755 PAXIP1Q6ZW49 1069 aaPredicted RBP13.13□□□□□ -0.31
VPS39-211ENST00000568755 SAPCD2Q86UD0 394 aa13.13□□□□□ -0.31
VPS39-211ENST00000568755 ZC3H15Q8WU90 426 aaKnown RBP13.13□□□□□ -0.31
VPS39-211ENST00000568755 GPR101Q96P66 508 aaPredicted RBP13.13□□□□□ -0.31
VPS39-211ENST00000568755 BCL2L13Q9BXK5 485 aa13.13□□□□□ -0.31
VPS39-211ENST00000568755 ZNF646O15015 1829 aaPredicted RBP13.12□□□□□ -0.31
VPS39-211ENST00000568755 CELF2O95319 508 aaKnown RBP13.12□□□□□ -0.31
VPS39-211ENST00000568755 HHIPL1Q96JK4 782 aa13.12□□□□□ -0.31
VPS39-211ENST00000568755 POLLQ9UGP5 575 aa13.12□□□□□ -0.31
VPS39-211ENST00000568755 CNOT7Q9UIV1 285 aaKnown RBP13.12□□□□□ -0.31
VPS39-211ENST00000568755 PDE4DIPQ5VU43 2346 aa13.11□□□□□ -0.31
VPS39-211ENST00000568755 PSMD14O00487 310 aa13.11□□□□□ -0.31
VPS39-211ENST00000568755 IRS4O14654 1257 aaPredicted RBP13.11□□□□□ -0.31
VPS39-211ENST00000568755 AOC2O75106 756 aa13.11□□□□□ -0.31
VPS39-211ENST00000568755 GPSM2P81274 684 aa13.11□□□□□ -0.31
VPS39-211ENST00000568755 WASHC4Q2M389 1173 aa13.11□□□□□ -0.31
VPS39-211ENST00000568755 MICALL2Q8IY33 904 aa13.11□□□□□ -0.31
VPS39-211ENST00000568755 DPF2Q92785 391 aa13.11□□□□□ -0.31
VPS39-211ENST00000568755 DBNDD1Q9H9R9 158 aa13.11□□□□□ -0.31
VPS39-211ENST00000568755 NSFL1CQ9UNZ2 370 aaKnown RBP13.11□□□□□ -0.31
VPS39-211ENST00000568755 ZBTB12Q9Y330 459 aaPredicted RBP13.11□□□□□ -0.31
VPS39-211ENST00000568755 RTL9Q8NET4 1388 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms