RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 ELMSAN1Q6PJG2 1045 aa5.89□□□□□ -1.47
VPS35-207ENST00000568191 DHX32Q7L7V1 743 aaKnown RBP5.89□□□□□ -1.47
VPS35-207ENST00000568191 C14orf37Q86TY3 774 aa5.89□□□□□ -1.47
VPS35-207ENST00000568191 RGL4Q8IZJ4 473 aa5.89□□□□□ -1.47
VPS35-207ENST00000568191 CLP1Q92989 425 aaKnown RBP5.89□□□□□ -1.47
VPS35-207ENST00000568191 STARD13Q9Y3M8 1113 aa5.89□□□□□ -1.47
VPS35-207ENST00000568191 SASH3O75995 380 aa5.88□□□□□ -1.47
VPS35-207ENST00000568191 EGFRP00533 1210 aa5.88□□□□□ -1.47
VPS35-207ENST00000568191 PROCP04070 461 aa5.88□□□□□ -1.47
VPS35-207ENST00000568191 GATA4P43694 442 aa5.88□□□□□ -1.47
VPS35-207ENST00000568191 BAG6P46379 1132 aa5.88□□□□□ -1.47
VPS35-207ENST00000568191 OCLNQ16625 522 aa5.88□□□□□ -1.47
VPS35-207ENST00000568191 TMEM164Q5U3C3 297 aa5.88□□□□□ -1.47
VPS35-207ENST00000568191 CD163Q86VB7 1156 aa5.88□□□□□ -1.47
VPS35-207ENST00000568191 ABTB2Q8N961 1025 aa5.88□□□□□ -1.47
VPS35-207ENST00000568191 NUDT8Q8WV74 236 aa5.88□□□□□ -1.47
VPS35-207ENST00000568191 C9orf172C9J069 976 aa5.87□□□□□ -1.47
VPS35-207ENST00000568191 CPB1P15086 417 aa5.87□□□□□ -1.47
VPS35-207ENST00000568191 ATP2B4P23634 1241 aa5.87□□□□□ -1.47
VPS35-207ENST00000568191 TARSP26639 723 aaKnown RBP5.87□□□□□ -1.47
VPS35-207ENST00000568191 PLAURQ03405 335 aa5.87□□□□□ -1.47
VPS35-207ENST00000568191 FAM69CQ0P6D2 419 aa5.87□□□□□ -1.47
VPS35-207ENST00000568191 C20orf204Q6ZNR8 217 aa5.87□□□□□ -1.47
VPS35-207ENST00000568191 TTC16Q8NEE8 873 aa5.87□□□□□ -1.47
VPS35-207ENST00000568191 TRPM4Q8TD43 1214 aa5.87□□□□□ -1.47
VPS35-207ENST00000568191 MKNK1Q9BUB5 465 aa5.87□□□□□ -1.47
VPS35-207ENST00000568191 FRRS1LQ9P0K9 344 aa5.87□□□□□ -1.47
VPS35-207ENST00000568191 LRFN2Q9ULH4 789 aa5.87□□□□□ -1.47
VPS35-207ENST00000568191 MTMR7Q9Y216 660 aa5.87□□□□□ -1.47
VPS35-207ENST00000568191 ARID3CA6NKF2 412 aa5.86□□□□□ -1.47
VPS35-207ENST00000568191 K7ELQ4 463 aaPredicted RBP5.86□□□□□ -1.47
VPS35-207ENST00000568191 OPLAHO14841 1288 aa5.86□□□□□ -1.47
VPS35-207ENST00000568191 GHRHP01286 108 aa5.86□□□□□ -1.47
VPS35-207ENST00000568191 RPLP1P05386 114 aaKnown RBP5.86□□□□□ -1.47
VPS35-207ENST00000568191 NID1P14543 1247 aa5.86□□□□□ -1.47
VPS35-207ENST00000568191 PCSK2P16519 638 aa5.86□□□□□ -1.47
VPS35-207ENST00000568191 NRLP54845 237 aa5.86□□□□□ -1.47
VPS35-207ENST00000568191 GPLD1P80108 840 aa5.86□□□□□ -1.47
VPS35-207ENST00000568191 NRG1Q02297 640 aaPredicted RBP5.86□□□□□ -1.47
VPS35-207ENST00000568191 NAA30Q147X3 362 aaPredicted RBP5.86□□□□□ -1.47
VPS35-207ENST00000568191 DCAF11Q8TEB1 546 aa5.86□□□□□ -1.47
VPS35-207ENST00000568191 TLR7Q9NYK1 1049 aaKnown RBP5.86□□□□□ -1.47
VPS35-207ENST00000568191 STIM2Q9P246 746 aa5.86□□□□□ -1.47
VPS35-207ENST00000568191 UBAP1LF5GYI3 381 aa5.85□□□□□ -1.47
VPS35-207ENST00000568191 ELNP15502 786 aa5.85□□□□□ -1.47
VPS35-207ENST00000568191 EIF2AK2P19525 551 aaKnown RBP5.85□□□□□ -1.47
VPS35-207ENST00000568191 CHRNA4P43681 627 aa5.85□□□□□ -1.47
VPS35-207ENST00000568191 TTC39BQ5VTQ0 682 aaPredicted RBP5.85□□□□□ -1.47
VPS35-207ENST00000568191 C8orf86Q6ZUL3 223 aa5.85□□□□□ -1.47
VPS35-207ENST00000568191 NLRP13Q86W25 1043 aa5.85□□□□□ -1.47
VPS35-207ENST00000568191 WFDC8Q8IUA0 241 aa5.85□□□□□ -1.47
VPS35-207ENST00000568191 DTWD1Q8N5C7 304 aa5.85□□□□□ -1.47
VPS35-207ENST00000568191 TTC9Q92623 222 aa5.85□□□□□ -1.47
VPS35-207ENST00000568191 SPACA7Q96KW9 195 aa5.85□□□□□ -1.47
VPS35-207ENST00000568191 ADAM23O75077 832 aa5.84□□□□□ -1.47
VPS35-207ENST00000568191 ITGB2P05107 769 aa5.84□□□□□ -1.47
VPS35-207ENST00000568191 AFF1P51825 1210 aaKnown RBP5.84□□□□□ -1.47
VPS35-207ENST00000568191 MLLT1Q03111 559 aaPredicted RBP5.84□□□□□ -1.47
VPS35-207ENST00000568191 CACTIN-AS1Q8N1I8 211 aa5.84□□□□□ -1.47
VPS35-207ENST00000568191 CCDC82Q8N4S0 544 aa5.84□□□□□ -1.47
VPS35-207ENST00000568191 ZFATQ9P243 1243 aa5.84□□□□□ -1.47
VPS35-207ENST00000568191 A0A0A0MRY4 1105 aa5.83□□□□□ -1.48
VPS35-207ENST00000568191 LOC102724428A0A0B4J2F2 783 aa5.83□□□□□ -1.48
VPS35-207ENST00000568191 FAM177BA6PVY3 158 aa5.83□□□□□ -1.48
VPS35-207ENST00000568191 FAM229AH3BQW9 127 aa5.83□□□□□ -1.48
VPS35-207ENST00000568191 SOX18P35713 384 aa5.83□□□□□ -1.48
VPS35-207ENST00000568191 ZAP70P43403 619 aa5.83□□□□□ -1.48
VPS35-207ENST00000568191 SIK1P57059 783 aa5.83□□□□□ -1.48
VPS35-207ENST00000568191 PERM1Q5SV97 790 aa5.83□□□□□ -1.48
VPS35-207ENST00000568191 MSL1Q68DK7 614 aa5.83□□□□□ -1.48
VPS35-207ENST00000568191 ETFBKMTQ8IXQ9 262 aa5.83□□□□□ -1.48
VPS35-207ENST00000568191 DMRTC2Q8IXT2 367 aaPredicted RBP5.83□□□□□ -1.48
VPS35-207ENST00000568191 SAP130Q9H0E3 1048 aa5.83□□□□□ -1.48
VPS35-207ENST00000568191 SMG9Q9H0W8 520 aaKnown RBP5.83□□□□□ -1.48
VPS35-207ENST00000568191 USP21Q9UK80 565 aa5.83□□□□□ -1.48
VPS35-207ENST00000568191 USP20Q9Y2K6 914 aa5.83□□□□□ -1.48
VPS35-207ENST00000568191 FURINP09958 794 aa5.82□□□□□ -1.48
VPS35-207ENST00000568191 GRNP28799 593 aaKnown RBP5.82□□□□□ -1.48
VPS35-207ENST00000568191 COL9A3Q14050 684 aaPredicted RBP5.82□□□□□ -1.48
VPS35-207ENST00000568191 GRIK4Q16099 956 aa5.82□□□□□ -1.48
VPS35-207ENST00000568191 HFE2Q6ZVN8 426 aa5.82□□□□□ -1.48
VPS35-207ENST00000568191 MUC3BQ9H195 1237 aa5.82□□□□□ -1.48
VPS35-207ENST00000568191 NAGPAQ9UK23 515 aa5.82□□□□□ -1.48
VPS35-207ENST00000568191 KCNMB2Q9Y691 235 aa5.82□□□□□ -1.48
VPS35-207ENST00000568191 ZBTB42B2RXF5 422 aa5.81□□□□□ -1.48
VPS35-207ENST00000568191 MMP20O60882 483 aa5.81□□□□□ -1.48
VPS35-207ENST00000568191 SCNN1AP37088 669 aa5.81□□□□□ -1.48
VPS35-207ENST00000568191 HYAL2Q12891 473 aa5.81□□□□□ -1.48
VPS35-207ENST00000568191 DOC2BQ14184 412 aa5.81□□□□□ -1.48
VPS35-207ENST00000568191 B4GALNT3Q6L9W6 998 aa5.81□□□□□ -1.48
VPS35-207ENST00000568191 ALKBH2Q6NS38 261 aa5.81□□□□□ -1.48
VPS35-207ENST00000568191 FMR1NBQ8N0W7 255 aaPredicted RBP5.81□□□□□ -1.48
VPS35-207ENST00000568191 GPR152Q8TDT2 470 aa5.81□□□□□ -1.48
VPS35-207ENST00000568191 PLD4Q96BZ4 506 aa5.81□□□□□ -1.48
VPS35-207ENST00000568191 LENG1Q96BZ8 264 aaPredicted RBP5.81□□□□□ -1.48
VPS35-207ENST00000568191 LPIN3Q9BQK8 851 aa5.81□□□□□ -1.48
VPS35-207ENST00000568191 TNFRSF10BO14763 440 aa5.8□□□□□ -1.48
VPS35-207ENST00000568191 HOXD8P13378 290 aaPredicted RBP5.8□□□□□ -1.48
VPS35-207ENST00000568191 AAMPQ13685 434 aa5.8□□□□□ -1.48
VPS35-207ENST00000568191 MAP4K3Q8IVH8 894 aa5.8□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms