RNA–Protein interactions for RNA: ENST00000567992.1

CLK3-220, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 603 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-220ENST00000567992 SPEF2Q9C093 1822 aa12.48□□□□□ -0.41
CLK3-220ENST00000567992 PPEF1O14829 653 aaPredicted RBP12.47□□□□□ -0.41
CLK3-220ENST00000567992 CCDC93Q567U6 631 aa12.47□□□□□ -0.41
CLK3-220ENST00000567992 SOGA3Q5TF21 947 aa12.47□□□□□ -0.41
CLK3-220ENST00000567992 UBE3BQ7Z3V4 1068 aa12.47□□□□□ -0.41
CLK3-220ENST00000567992 COL4A5P29400 1685 aa12.47□□□□□ -0.41
CLK3-220ENST00000567992 PDE8AO60658 829 aa12.46□□□□□ -0.41
CLK3-220ENST00000567992 GRAPQ13588 217 aa12.46□□□□□ -0.41
CLK3-220ENST00000567992 C9orf131Q5VYM1 1079 aa12.46□□□□□ -0.41
CLK3-220ENST00000567992 GRAPLQ8TC17 118 aaPredicted RBP12.46□□□□□ -0.41
CLK3-220ENST00000567992 CELF1Q92879 486 aaKnown RBP12.46□□□□□ -0.41
CLK3-220ENST00000567992 PLA2G12BQ9BX93 195 aa12.46□□□□□ -0.41
CLK3-220ENST00000567992 TAOK3Q9H2K8 898 aa12.46□□□□□ -0.41
CLK3-220ENST00000567992 RTL9Q8NET4 1388 aa12.45□□□□□ -0.42
CLK3-220ENST00000567992 ALDH1L1O75891 902 aa12.45□□□□□ -0.42
CLK3-220ENST00000567992 LMNB1P20700 586 aa12.45□□□□□ -0.42
CLK3-220ENST00000567992 CTSWP56202 376 aa12.45□□□□□ -0.42
CLK3-220ENST00000567992 SLC4A10Q6U841 1118 aa12.45□□□□□ -0.42
CLK3-220ENST00000567992 DDX46Q7L014 1031 aaKnown RBP12.45□□□□□ -0.42
CLK3-220ENST00000567992 ZNF784Q8NCA9 323 aaPredicted RBP12.45□□□□□ -0.42
CLK3-220ENST00000567992 SEC31BQ9NQW1 1179 aa12.45□□□□□ -0.42
CLK3-220ENST00000567992 NOB1Q9ULX3 412 aaKnown RBP12.45□□□□□ -0.42
CLK3-220ENST00000567992 ATP6V0A2Q9Y487 856 aa12.45□□□□□ -0.42
CLK3-220ENST00000567992 A0A1B0GUL6 1792 aa12.45□□□□□ -0.42
CLK3-220ENST00000567992 BCAR3O75815 825 aa12.44□□□□□ -0.42
CLK3-220ENST00000567992 HSP90B1P14625 803 aaKnown RBP12.44□□□□□ -0.42
CLK3-220ENST00000567992 FKBP4Q02790 459 aaKnown RBP eCLIP12.44□□□□□ -0.42
CLK3-220ENST00000567992 CC2D2BQ6DHV5 1058 aa12.44□□□□□ -0.42
CLK3-220ENST00000567992 TTLL11Q8NHH1 800 aa12.44□□□□□ -0.42
CLK3-220ENST00000567992 SRCIN1Q9C0H9 1055 aa12.44□□□□□ -0.42
CLK3-220ENST00000567992 RNF181Q9P0P0 153 aa12.44□□□□□ -0.42
CLK3-220ENST00000567992 UTYO14607 1347 aa12.43□□□□□ -0.42
CLK3-220ENST00000567992 GRM8O00222 908 aa12.43□□□□□ -0.42
CLK3-220ENST00000567992 BBOX1O75936 387 aa12.43□□□□□ -0.42
CLK3-220ENST00000567992 CCDC152Q4G0S7 254 aa12.43□□□□□ -0.42
CLK3-220ENST00000567992 EPHA10Q5JZY3 1008 aa12.43□□□□□ -0.42
CLK3-220ENST00000567992 RTKN2Q8IZC4 609 aa12.43□□□□□ -0.42
CLK3-220ENST00000567992 CCDC85AQ96PX6 553 aaPredicted RBP12.43□□□□□ -0.42
CLK3-220ENST00000567992 PSMD1Q99460 953 aa12.43□□□□□ -0.42
CLK3-220ENST00000567992 GREM2Q9H772 168 aa12.43□□□□□ -0.42
CLK3-220ENST00000567992 KIF16BQ96L93 1317 aa12.42□□□□□ -0.42
CLK3-220ENST00000567992 ZC3H4Q9UPT8 1303 aaKnown RBP12.42□□□□□ -0.42
CLK3-220ENST00000567992 CSF1RP07333 972 aa12.42□□□□□ -0.42
CLK3-220ENST00000567992 NBPF7P0C2Y1 421 aaPredicted RBP12.42□□□□□ -0.42
CLK3-220ENST00000567992 FOXO4P98177 505 aa12.42□□□□□ -0.42
CLK3-220ENST00000567992 TMC4Q7Z404 712 aa12.42□□□□□ -0.42
CLK3-220ENST00000567992 SP8Q8IXZ3 490 aa12.42□□□□□ -0.42
CLK3-220ENST00000567992 KAZALD1Q96I82 304 aa12.42□□□□□ -0.42
CLK3-220ENST00000567992 FAM161AQ3B820 660 aa12.41□□□□□ -0.42
CLK3-220ENST00000567992 ARHGAP45Q92619 1136 aa12.41□□□□□ -0.42
CLK3-220ENST00000567992 RTFDC1Q9BY42 306 aaPredicted RBP12.41□□□□□ -0.42
CLK3-220ENST00000567992 API5Q9BZZ5 524 aaKnown RBP12.41□□□□□ -0.42
CLK3-220ENST00000567992 ZNF277Q9NRM2 450 aaPredicted RBP12.41□□□□□ -0.42
CLK3-220ENST00000567992 TNNQ9UQP3 1299 aa12.41□□□□□ -0.42
CLK3-220ENST00000567992 TRIM27P14373 513 aa12.4□□□□□ -0.42
CLK3-220ENST00000567992 RPS8P62241 208 aaKnown RBP12.4□□□□□ -0.42
CLK3-220ENST00000567992 GRIPAP1Q4V328 841 aa12.4□□□□□ -0.42
CLK3-220ENST00000567992 SUCLG2Q96I99 432 aa12.4□□□□□ -0.42
CLK3-220ENST00000567992 USP44Q9H0E7 712 aa12.4□□□□□ -0.42
CLK3-220ENST00000567992 WDR90Q96KV7 1748 aa12.4□□□□□ -0.43
CLK3-220ENST00000567992 IARSP41252 1262 aaKnown RBP12.39□□□□□ -0.43
CLK3-220ENST00000567992 CCT4P50991 539 aaKnown RBP12.39□□□□□ -0.43
CLK3-220ENST00000567992 ANKRD44Q8N8A2 993 aa12.39□□□□□ -0.43
CLK3-220ENST00000567992 C9orf78Q9NZ63 289 aaPredicted RBP12.39□□□□□ -0.43
CLK3-220ENST00000567992 ITGA6P23229 1130 aa12.38□□□□□ -0.43
CLK3-220ENST00000567992 GPSM2P81274 684 aa12.38□□□□□ -0.43
CLK3-220ENST00000567992 RABL6Q3YEC7 729 aaPredicted RBP12.38□□□□□ -0.43
CLK3-220ENST00000567992 INTS3Q68E01 1043 aaKnown RBP12.38□□□□□ -0.43
CLK3-220ENST00000567992 DPP8Q6V1X1 898 aaPredicted RBP12.38□□□□□ -0.43
CLK3-220ENST00000567992 ATF7IPQ6VMQ6 1270 aa12.38□□□□□ -0.43
CLK3-220ENST00000567992 MPNDQ8N594 471 aa12.38□□□□□ -0.43
CLK3-220ENST00000567992 LMBR1LQ6UX01 489 aa12.37□□□□□ -0.43
CLK3-220ENST00000567992 ANKRD18AQ8IVF6 992 aa12.37□□□□□ -0.43
CLK3-220ENST00000567992 ZNF526Q8TF50 670 aaPredicted RBP12.37□□□□□ -0.43
CLK3-220ENST00000567992 CDC5LQ99459 802 aaKnown RBP12.37□□□□□ -0.43
CLK3-220ENST00000567992 POLLQ9UGP5 575 aa12.37□□□□□ -0.43
CLK3-220ENST00000567992 ZNF646O15015 1829 aaPredicted RBP12.37□□□□□ -0.43
CLK3-220ENST00000567992 ZNF541Q9H0D2 1346 aa12.37□□□□□ -0.43
CLK3-220ENST00000567992 FZD9O00144 591 aa12.36□□□□□ -0.43
CLK3-220ENST00000567992 ZKSCAN2Q63HK3 967 aa12.36□□□□□ -0.43
CLK3-220ENST00000567992 TBC1D16Q8TBP0 767 aa12.36□□□□□ -0.43
CLK3-220ENST00000567992 FRAT1Q92837 279 aaPredicted RBP12.36□□□□□ -0.43
CLK3-220ENST00000567992 BICC1Q9H694 974 aaKnown RBP12.36□□□□□ -0.43
CLK3-220ENST00000567992 BSDC1Q9NW68 430 aaPredicted RBP12.36□□□□□ -0.43
CLK3-220ENST00000567992 PODXL2Q9NZ53 605 aa12.36□□□□□ -0.43
CLK3-220ENST00000567992 PSME4Q14997 1843 aa12.35□□□□□ -0.43
CLK3-220ENST00000567992 GLTPD2A6NH11 291 aa12.35□□□□□ -0.43
CLK3-220ENST00000567992 IPO8O15397 1037 aaKnown RBP12.35□□□□□ -0.43
CLK3-220ENST00000567992 PPIP5K2O43314 1243 aa12.35□□□□□ -0.43
CLK3-220ENST00000567992 KIAA2012Q0VF49 1180 aa12.35□□□□□ -0.43
CLK3-220ENST00000567992 AOC3Q16853 763 aa12.35□□□□□ -0.43
CLK3-220ENST00000567992 SUPT20HQ8NEM7 779 aa12.35□□□□□ -0.43
CLK3-220ENST00000567992 GPR101Q96P66 508 aaPredicted RBP12.35□□□□□ -0.43
CLK3-220ENST00000567992 MEIS3Q99687 375 aa12.35□□□□□ -0.43
CLK3-220ENST00000567992 TMX4Q9H1E5 349 aaPredicted RBP12.35□□□□□ -0.43
CLK3-220ENST00000567992 GPBP1L1Q9HC44 474 aaPredicted RBP12.35□□□□□ -0.43
CLK3-220ENST00000567992 NMRK2Q9NPI5 230 aa12.35□□□□□ -0.43
CLK3-220ENST00000567992 MINPP1Q9UNW1 487 aa12.35□□□□□ -0.43
CLK3-220ENST00000567992 NSFL1CQ9UNZ2 370 aaKnown RBP12.35□□□□□ -0.43
CLK3-220ENST00000567992 SCN9AQ15858 1988 aa12.35□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms